Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1712 and Psyr_1713 are separated by 422 nucleotides Psyr_1713 and Psyr_1714 are separated by 108 nucleotides Psyr_1714 and Psyr_1715 overlap by 4 nucleotides
Psyr_1712: Psyr_1712 - conserved hypothetical protein, at 1,937,665 to 1,938,849
_1712
Psyr_1713: Psyr_1713 - hypothetical protein, at 1,939,272 to 1,939,538
_1713
Psyr_1714: Psyr_1714 - exonuclease SbcC, at 1,939,647 to 1,943,291
_1714
Psyr_1715: Psyr_1715 - Exodeoxyribonuclease I subunit D, at 1,943,288 to 1,944,532
_1715
Position (kb) 1939
1940
1941
1942
1943
1944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1938.823 kb on + strand at 1938.824 kb on - strand at 1938.824 kb on - strand at 1938.843 kb on + strand at 1938.875 kb on + strand at 1938.915 kb on + strand at 1938.921 kb on + strand at 1938.998 kb on + strand at 1938.999 kb on - strand at 1939.063 kb on + strand at 1939.064 kb on - strand at 1939.139 kb on + strand at 1939.139 kb on + strand at 1939.139 kb on + strand at 1939.140 kb on - strand at 1939.140 kb on - strand at 1939.151 kb on + strand at 1939.152 kb on - strand at 1939.152 kb on - strand at 1939.263 kb on + strand at 1939.264 kb on - strand at 1939.401 kb on - strand, within Psyr_1713 at 1940.074 kb on + strand, within Psyr_1714 at 1940.074 kb on + strand, within Psyr_1714 at 1940.075 kb on - strand, within Psyr_1714 at 1940.150 kb on - strand, within Psyr_1714 at 1940.150 kb on - strand, within Psyr_1714 at 1941.708 kb on + strand, within Psyr_1714 at 1942.019 kb on + strand, within Psyr_1714 at 1942.673 kb on + strand, within Psyr_1714 at 1942.673 kb on + strand, within Psyr_1714 at 1942.673 kb on + strand, within Psyr_1714 at 1942.703 kb on - strand, within Psyr_1714 at 1942.932 kb on - strand at 1943.102 kb on + strand at 1943.103 kb on - strand at 1943.103 kb on - strand at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1944.061 kb on - strand, within Psyr_1715
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 1,938,823 + +0.4 1,938,824 - -2.2 1,938,824 - -0.6 1,938,843 + -0.6 1,938,875 + -0.8 1,938,915 + -2.9 1,938,921 + -2.3 1,938,998 + -0.6 1,938,999 - +1.9 1,939,063 + -1.3 1,939,064 - -1.3 1,939,139 + +0.2 1,939,139 + -1.2 1,939,139 + -0.1 1,939,140 - -1.8 1,939,140 - -1.2 1,939,151 + +0.6 1,939,152 - +0.9 1,939,152 - -0.9 1,939,263 + -0.1 1,939,264 - +0.4 1,939,401 - Psyr_1713 0.48 +1.1 1,940,074 + Psyr_1714 0.12 +0.1 1,940,074 + Psyr_1714 0.12 -1.1 1,940,075 - Psyr_1714 0.12 -1.4 1,940,150 - Psyr_1714 0.14 -1.2 1,940,150 - Psyr_1714 0.14 -0.5 1,941,708 + Psyr_1714 0.57 +0.9 1,942,019 + Psyr_1714 0.65 +0.0 1,942,673 + Psyr_1714 0.83 -1.5 1,942,673 + Psyr_1714 0.83 -0.4 1,942,673 + Psyr_1714 0.83 -0.9 1,942,703 - Psyr_1714 0.84 -0.4 1,942,932 - -2.0 1,943,102 + -0.2 1,943,103 - +0.8 1,943,103 - -0.7 1,943,865 + Psyr_1715 0.46 -0.0 1,943,865 + Psyr_1715 0.46 -1.7 1,943,865 + Psyr_1715 0.46 +0.2 1,943,865 + Psyr_1715 0.46 -0.6 1,943,865 + Psyr_1715 0.46 +0.1 1,943,865 + Psyr_1715 0.46 +0.2 1,943,865 + Psyr_1715 0.46 -0.0 1,943,866 - Psyr_1715 0.46 -0.6 1,943,866 - Psyr_1715 0.46 +0.1 1,943,866 - Psyr_1715 0.46 -3.2 1,943,866 - Psyr_1715 0.46 +0.0 1,943,866 - Psyr_1715 0.46 +1.5 1,943,866 - Psyr_1715 0.46 -0.6 1,943,866 - Psyr_1715 0.46 +0.0 1,944,061 - Psyr_1715 0.62 -1.0
Or see this region's nucleotide sequence