Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1700

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1699 and Psyr_1700 are separated by 170 nucleotidesPsyr_1700 and Psyr_1701 are separated by 27 nucleotides Psyr_1699: Psyr_1699 - Protein of unknown function DUF1329, at 1,906,466 to 1,907,821 _1699 Psyr_1700: Psyr_1700 - Glycosyl hydrolase, BNR repeat protein, at 1,907,992 to 1,909,101 _1700 Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Position (kb) 1907 1908 1909 1910Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1907.002 kb on + strand, within Psyr_1699at 1907.002 kb on + strand, within Psyr_1699at 1907.003 kb on - strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.079 kb on - strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.247 kb on + strand, within Psyr_1699at 1907.270 kb on + strand, within Psyr_1699at 1907.271 kb on - strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.384 kb on - strand, within Psyr_1699at 1907.391 kb on - strand, within Psyr_1699at 1907.423 kb on - strand, within Psyr_1699at 1907.436 kb on + strand, within Psyr_1699at 1907.437 kb on - strand, within Psyr_1699at 1907.445 kb on + strand, within Psyr_1699at 1907.465 kb on + strand, within Psyr_1699at 1907.467 kb on + strand, within Psyr_1699at 1907.534 kb on + strand, within Psyr_1699at 1907.535 kb on - strand, within Psyr_1699at 1907.535 kb on - strand, within Psyr_1699at 1907.552 kb on + strand, within Psyr_1699at 1907.634 kb on - strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.649 kb on - strand, within Psyr_1699at 1907.649 kb on - strand, within Psyr_1699at 1907.858 kb on - strandat 1907.949 kb on + strandat 1907.950 kb on - strandat 1908.035 kb on + strandat 1908.035 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.039 kb on - strandat 1908.039 kb on - strandat 1908.089 kb on - strandat 1908.089 kb on - strandat 1908.114 kb on + strand, within Psyr_1700at 1908.115 kb on - strand, within Psyr_1700at 1908.193 kb on + strand, within Psyr_1700at 1908.194 kb on - strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.410 kb on + strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.781 kb on + strand, within Psyr_1700at 1909.099 kb on + strandat 1909.099 kb on + strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.189 kb on - strandat 1909.360 kb on - strandat 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.415 kb on - strandat 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strandat 1909.454 kb on - strand, within Psyr_1701at 1909.454 kb on - strand, within Psyr_1701at 1909.564 kb on + strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.565 kb on - strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.775 kb on - strand, within Psyr_1701at 1909.899 kb on + strand, within Psyr_1701

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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1,907,002 + Psyr_1699 0.40 -0.5
1,907,002 + Psyr_1699 0.40 +0.2
1,907,003 - Psyr_1699 0.40 +2.1
1,907,078 + Psyr_1699 0.45 +0.2
1,907,078 + Psyr_1699 0.45 -0.4
1,907,078 + Psyr_1699 0.45 -0.5
1,907,078 + Psyr_1699 0.45 -0.2
1,907,078 + Psyr_1699 0.45 -0.8
1,907,078 + Psyr_1699 0.45 -0.9
1,907,079 - Psyr_1699 0.45 +0.4
1,907,123 + Psyr_1699 0.48 +0.4
1,907,123 + Psyr_1699 0.48 -1.1
1,907,123 + Psyr_1699 0.48 +0.1
1,907,124 - Psyr_1699 0.49 -0.6
1,907,124 - Psyr_1699 0.49 -1.7
1,907,124 - Psyr_1699 0.49 -1.0
1,907,124 - Psyr_1699 0.49 -0.2
1,907,126 + Psyr_1699 0.49 -1.0
1,907,126 + Psyr_1699 0.49 +2.8
1,907,126 + Psyr_1699 0.49 -0.2
1,907,126 + Psyr_1699 0.49 +2.0
1,907,127 - Psyr_1699 0.49 -1.0
1,907,127 - Psyr_1699 0.49 +0.4
1,907,127 - Psyr_1699 0.49 +1.7
1,907,127 - Psyr_1699 0.49 -0.7
1,907,225 + Psyr_1699 0.56 -1.4
1,907,225 + Psyr_1699 0.56 -1.4
1,907,225 + Psyr_1699 0.56 -1.6
1,907,226 - Psyr_1699 0.56 +0.3
1,907,226 - Psyr_1699 0.56 -0.4
1,907,226 - Psyr_1699 0.56 -0.6
1,907,247 + Psyr_1699 0.58 -1.4
1,907,270 + Psyr_1699 0.59 +1.1
1,907,271 - Psyr_1699 0.59 -1.7
1,907,381 + Psyr_1699 0.67 +0.3
1,907,381 + Psyr_1699 0.67 -0.2
1,907,381 + Psyr_1699 0.67 +0.1
1,907,381 + Psyr_1699 0.67 -0.4
1,907,381 + Psyr_1699 0.67 +0.8
1,907,381 + Psyr_1699 0.67 +0.3
1,907,381 + Psyr_1699 0.67 -1.2
1,907,382 - Psyr_1699 0.68 +0.7
1,907,382 - Psyr_1699 0.68 +0.1
1,907,382 - Psyr_1699 0.68 +0.0
1,907,382 - Psyr_1699 0.68 +0.9
1,907,382 - Psyr_1699 0.68 -0.5
1,907,382 - Psyr_1699 0.68 +1.7
1,907,382 - Psyr_1699 0.68 +0.3
1,907,382 - Psyr_1699 0.68 +0.6
1,907,382 - Psyr_1699 0.68 -0.4
1,907,383 + Psyr_1699 0.68 +0.8
1,907,383 + Psyr_1699 0.68 +0.3
1,907,384 - Psyr_1699 0.68 -0.7
1,907,391 - Psyr_1699 0.68 -1.0
1,907,423 - Psyr_1699 0.71 +0.3
1,907,436 + Psyr_1699 0.72 +0.0
1,907,437 - Psyr_1699 0.72 -0.7
1,907,445 + Psyr_1699 0.72 +0.6
1,907,465 + Psyr_1699 0.74 -0.1
1,907,467 + Psyr_1699 0.74 -0.2
1,907,534 + Psyr_1699 0.79 -0.4
1,907,535 - Psyr_1699 0.79 -0.7
1,907,535 - Psyr_1699 0.79 +1.2
1,907,552 + Psyr_1699 0.80 -1.2
1,907,634 - Psyr_1699 0.86 -0.3
1,907,645 + Psyr_1699 0.87 +1.3
1,907,645 + Psyr_1699 0.87 +4.2
1,907,645 + Psyr_1699 0.87 -1.5
1,907,645 + Psyr_1699 0.87 +0.2
1,907,645 + Psyr_1699 0.87 +1.6
1,907,645 + Psyr_1699 0.87 -1.0
1,907,645 + Psyr_1699 0.87 +0.1
1,907,645 + Psyr_1699 0.87 +0.0
1,907,646 - Psyr_1699 0.87 -0.1
1,907,646 - Psyr_1699 0.87 -0.6
1,907,646 - Psyr_1699 0.87 -0.7
1,907,646 - Psyr_1699 0.87 +0.9
1,907,649 - Psyr_1699 0.87 -0.6
1,907,649 - Psyr_1699 0.87 +1.6
1,907,858 - -0.1
1,907,949 + -1.0
1,907,950 - -0.3
1,908,035 + +0.5
1,908,035 + +0.2
1,908,038 + +2.4
1,908,038 + -0.5
1,908,038 + +0.0
1,908,038 + -1.0
1,908,039 - +0.2
1,908,039 - -2.6
1,908,089 - +0.2
1,908,089 - +0.5
1,908,114 + Psyr_1700 0.11 -0.2
1,908,115 - Psyr_1700 0.11 -1.2
1,908,193 + Psyr_1700 0.18 -0.5
1,908,194 - Psyr_1700 0.18 -0.8
1,908,285 + Psyr_1700 0.26 +1.6
1,908,286 - Psyr_1700 0.26 -0.5
1,908,286 - Psyr_1700 0.26 -0.7
1,908,410 + Psyr_1700 0.38 -1.0
1,908,411 - Psyr_1700 0.38 -0.7
1,908,411 - Psyr_1700 0.38 +0.1
1,908,607 + Psyr_1700 0.55 -0.6
1,908,607 + Psyr_1700 0.55 -0.1
1,908,781 + Psyr_1700 0.71 -1.4
1,909,099 + -0.6
1,909,099 + -0.1
1,909,100 - +0.4
1,909,100 - -0.4
1,909,100 - -1.4
1,909,189 - -0.4
1,909,360 - -0.2
1,909,414 + Psyr_1701 0.12 -0.8
1,909,414 + Psyr_1701 0.12 -1.2
1,909,414 + Psyr_1701 0.12 +1.8
1,909,414 + Psyr_1701 0.12 -0.4
1,909,414 + Psyr_1701 0.12 -0.6
1,909,414 + Psyr_1701 0.12 -0.6
1,909,414 + Psyr_1701 0.12 +1.1
1,909,415 - +1.9
1,909,415 - Psyr_1701 0.12 -1.7
1,909,415 - Psyr_1701 0.12 -2.7
1,909,415 - Psyr_1701 0.12 +0.5
1,909,415 - Psyr_1701 0.12 +0.3
1,909,415 - Psyr_1701 0.12 +0.1
1,909,415 - Psyr_1701 0.12 -0.8
1,909,415 - Psyr_1701 0.12 +0.0
1,909,415 - Psyr_1701 0.12 +0.6
1,909,415 - Psyr_1701 0.12 -0.2
1,909,415 - Psyr_1701 0.12 -0.3
1,909,415 - Psyr_1701 0.12 +0.6
1,909,453 + Psyr_1701 0.14 +0.5
1,909,453 + Psyr_1701 0.14 -1.3
1,909,453 + Psyr_1701 0.14 +0.0
1,909,453 + Psyr_1701 0.14 +0.1
1,909,453 + -1.0
1,909,454 - Psyr_1701 0.14 +0.8
1,909,454 - Psyr_1701 0.14 -2.0
1,909,564 + Psyr_1701 0.18 -0.1
1,909,565 - Psyr_1701 0.18 -0.2
1,909,565 - Psyr_1701 0.18 +0.0
1,909,565 - Psyr_1701 0.18 +0.8
1,909,774 + Psyr_1701 0.27 +1.6
1,909,774 + Psyr_1701 0.27 -0.7
1,909,774 + Psyr_1701 0.27 +0.1
1,909,774 + Psyr_1701 0.27 -0.1
1,909,774 + Psyr_1701 0.27 +0.6
1,909,775 - Psyr_1701 0.27 +0.5
1,909,899 + Psyr_1701 0.32 +0.4

Or see this region's nucleotide sequence