Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1571 and Psyr_1572 are separated by 86 nucleotides Psyr_1572 and Psyr_1573 are separated by 66 nucleotides Psyr_1573 and Psyr_1574 are separated by 76 nucleotides
Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502
_1571
Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963
_1572
Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506
_1573
Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643
_1574
Position (kb) 1768
1769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1767.087 kb on + strand, within Psyr_1571 at 1767.087 kb on + strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.511 kb on - strand at 1767.591 kb on - strand at 1767.591 kb on - strand at 1767.683 kb on + strand, within Psyr_1572 at 1767.683 kb on + strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.725 kb on + strand, within Psyr_1572 at 1767.726 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.171 kb on + strand, within Psyr_1573 at 1768.171 kb on + strand, within Psyr_1573 at 1768.171 kb on + strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.408 kb on + strand, within Psyr_1573 at 1768.414 kb on - strand, within Psyr_1573 at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.518 kb on + strand at 1768.556 kb on + strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.601 kb on + strand at 1768.601 kb on + strand at 1768.613 kb on - strand at 1768.613 kb on - strand at 1768.761 kb on + strand at 1768.761 kb on + strand at 1768.860 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1769.284 kb on - strand, within Psyr_1574 at 1769.284 kb on - strand, within Psyr_1574 at 1769.382 kb on + strand, within Psyr_1574 at 1769.382 kb on + strand, within Psyr_1574 at 1769.382 kb on + strand, within Psyr_1574 at 1769.383 kb on - strand, within Psyr_1574 at 1769.383 kb on - strand, within Psyr_1574 at 1769.383 kb on - strand, within Psyr_1574 at 1769.383 kb on - strand, within Psyr_1574 at 1769.383 kb on - strand, within Psyr_1574 at 1769.490 kb on + strand, within Psyr_1574
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 1,767,087 + Psyr_1571 0.77 +0.3 1,767,087 + Psyr_1571 0.77 +1.0 1,767,088 - Psyr_1571 0.77 +1.4 1,767,088 - Psyr_1571 0.77 +1.3 1,767,088 - Psyr_1571 0.77 +0.6 1,767,088 - Psyr_1571 0.77 -1.4 1,767,088 - Psyr_1571 0.77 +0.4 1,767,088 - Psyr_1571 0.77 -1.9 1,767,088 - Psyr_1571 0.77 -0.6 1,767,088 - Psyr_1571 0.77 -0.1 1,767,123 + Psyr_1571 0.79 +0.8 1,767,123 + Psyr_1571 0.79 +0.4 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.7 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 -1.1 1,767,123 + Psyr_1571 0.79 -0.8 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +1.8 1,767,123 + Psyr_1571 0.79 +1.2 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -0.4 1,767,123 + Psyr_1571 0.79 +0.6 1,767,123 + Psyr_1571 0.79 -0.7 1,767,123 + Psyr_1571 0.79 -1.9 1,767,123 + Psyr_1571 0.79 -0.7 1,767,123 + Psyr_1571 0.79 -3.0 1,767,123 + Psyr_1571 0.79 -2.8 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 +0.9 1,767,123 + Psyr_1571 0.79 +1.3 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -0.7 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -1.3 1,767,123 + Psyr_1571 0.79 +1.3 1,767,123 + Psyr_1571 0.79 -0.0 1,767,123 + Psyr_1571 0.79 -0.6 1,767,123 + Psyr_1571 0.79 -0.0 1,767,123 + Psyr_1571 0.79 -1.0 1,767,123 + Psyr_1571 0.79 -0.9 1,767,123 + Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 +0.8 1,767,124 - Psyr_1571 0.79 +0.9 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 +0.8 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 -0.7 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 -1.3 1,767,124 - Psyr_1571 0.79 -0.8 1,767,124 - Psyr_1571 0.79 -1.3 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 +1.3 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - +0.1 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 +1.7 1,767,124 - Psyr_1571 0.79 +1.0 1,767,124 - Psyr_1571 0.79 +2.7 1,767,124 - Psyr_1571 0.79 +0.2 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -1.3 1,767,124 - Psyr_1571 0.79 +1.3 1,767,124 - Psyr_1571 0.79 +1.6 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 +1.0 1,767,124 - Psyr_1571 0.79 +0.9 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 -0.4 1,767,124 - Psyr_1571 0.79 +0.7 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 +0.2 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 -0.9 1,767,124 - Psyr_1571 0.79 +1.4 1,767,124 - Psyr_1571 0.79 +0.1 1,767,124 - Psyr_1571 0.79 -1.3 1,767,354 + -0.3 1,767,354 + -1.2 1,767,354 + +0.7 1,767,354 + +1.3 1,767,354 + +0.9 1,767,355 - -0.4 1,767,355 - +0.1 1,767,355 - -1.0 1,767,355 - +0.7 1,767,355 - +0.4 1,767,355 - -1.9 1,767,355 - -1.8 1,767,355 - -1.1 1,767,355 - +3.5 1,767,355 - -1.3 1,767,355 - -0.6 1,767,355 - +0.5 1,767,511 - -0.3 1,767,591 - +0.4 1,767,591 - +1.9 1,767,683 + Psyr_1572 0.25 -0.3 1,767,683 + Psyr_1572 0.25 +0.3 1,767,684 - Psyr_1572 0.25 -1.1 1,767,684 - Psyr_1572 0.25 +0.7 1,767,725 + Psyr_1572 0.36 -0.3 1,767,726 - Psyr_1572 0.37 +1.1 1,767,794 - Psyr_1572 0.55 +0.5 1,767,794 - Psyr_1572 0.55 -1.9 1,767,794 - Psyr_1572 0.55 +0.8 1,767,858 - Psyr_1572 0.72 +0.1 1,767,858 - Psyr_1572 0.72 -0.0 1,768,048 + -0.6 1,768,048 + -0.4 1,768,048 + +0.7 1,768,048 + +0.1 1,768,048 + +0.1 1,768,049 - -0.3 1,768,049 - +1.5 1,768,049 - -0.8 1,768,049 - +1.1 1,768,049 - +1.6 1,768,049 - -0.1 1,768,171 + Psyr_1573 0.30 -1.1 1,768,171 + Psyr_1573 0.30 -0.1 1,768,171 + Psyr_1573 0.30 -0.6 1,768,195 - Psyr_1573 0.35 -0.2 1,768,195 - Psyr_1573 0.35 -2.2 1,768,408 + Psyr_1573 0.79 +0.2 1,768,414 - Psyr_1573 0.81 +0.4 1,768,509 + +0.3 1,768,509 + -1.1 1,768,509 + -0.6 1,768,509 + -2.4 1,768,509 + -1.5 1,768,510 - -0.6 1,768,510 - -0.6 1,768,510 - +0.4 1,768,510 - -0.2 1,768,510 - -0.3 1,768,510 - -1.6 1,768,510 - +0.4 1,768,510 - -1.1 1,768,510 - -2.8 1,768,510 - -0.4 1,768,518 + -0.0 1,768,556 + +0.8 1,768,557 - +0.2 1,768,557 - +1.2 1,768,557 - +1.7 1,768,557 - -0.7 1,768,560 - +0.7 1,768,560 - +0.9 1,768,560 - +0.7 1,768,560 - -1.1 1,768,560 - +0.4 1,768,601 + -0.5 1,768,601 + -1.3 1,768,613 - +0.7 1,768,613 - -0.3 1,768,761 + +0.7 1,768,761 + -2.3 1,768,860 + Psyr_1574 0.13 -0.2 1,768,943 + Psyr_1574 0.17 +0.3 1,768,943 + Psyr_1574 0.17 -0.7 1,768,943 + Psyr_1574 0.17 +1.4 1,768,943 + Psyr_1574 0.17 +0.9 1,768,943 + Psyr_1574 0.17 +0.5 1,768,944 - Psyr_1574 0.18 +0.7 1,768,944 - Psyr_1574 0.18 +0.5 1,768,944 - Psyr_1574 0.18 +0.8 1,768,944 - Psyr_1574 0.18 +1.4 1,768,944 - Psyr_1574 0.18 +0.9 1,769,284 - Psyr_1574 0.34 -0.6 1,769,284 - Psyr_1574 0.34 +0.4 1,769,382 + Psyr_1574 0.39 +0.8 1,769,382 + Psyr_1574 0.39 +0.1 1,769,382 + Psyr_1574 0.39 +0.4 1,769,383 - Psyr_1574 0.39 -0.2 1,769,383 - Psyr_1574 0.39 +0.3 1,769,383 - Psyr_1574 0.39 -0.6 1,769,383 - Psyr_1574 0.39 -2.3 1,769,383 - Psyr_1574 0.39 -0.3 1,769,490 + Psyr_1574 0.44 +0.6
Or see this region's nucleotide sequence