Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1427

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1426 and Psyr_1427 overlap by 4 nucleotidesPsyr_1427 and Psyr_1428 are separated by 2 nucleotides Psyr_1426: Psyr_1426 - conserved hypothetical protein, at 1,614,863 to 1,616,401 _1426 Psyr_1427: Psyr_1427 - conserved hypothetical protein, at 1,616,398 to 1,616,772 _1427 Psyr_1428: Psyr_1428 - conserved hypothetical protein, at 1,616,775 to 1,618,142 _1428 Position (kb) 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1615.400 kb on + strandat 1615.401 kb on - strand, within Psyr_1426at 1615.401 kb on - strand, within Psyr_1426at 1615.401 kb on - strand, within Psyr_1426at 1615.428 kb on + strand, within Psyr_1426at 1615.429 kb on - strand, within Psyr_1426at 1615.429 kb on - strand, within Psyr_1426at 1615.438 kb on - strand, within Psyr_1426at 1615.624 kb on + strand, within Psyr_1426at 1615.624 kb on + strand, within Psyr_1426at 1615.624 kb on + strand, within Psyr_1426at 1615.624 kb on + strand, within Psyr_1426at 1615.625 kb on - strand, within Psyr_1426at 1615.625 kb on - strand, within Psyr_1426at 1615.625 kb on - strand, within Psyr_1426at 1615.625 kb on - strand, within Psyr_1426at 1615.625 kb on - strand, within Psyr_1426at 1615.734 kb on + strandat 1615.735 kb on - strand, within Psyr_1426at 1615.807 kb on + strand, within Psyr_1426at 1615.808 kb on - strand, within Psyr_1426at 1615.846 kb on - strand, within Psyr_1426at 1615.951 kb on + strand, within Psyr_1426at 1615.951 kb on + strand, within Psyr_1426at 1615.951 kb on + strand, within Psyr_1426at 1615.951 kb on + strand, within Psyr_1426at 1615.952 kb on - strand, within Psyr_1426at 1616.041 kb on + strand, within Psyr_1426at 1616.041 kb on + strand, within Psyr_1426at 1616.065 kb on + strand, within Psyr_1426at 1616.065 kb on + strand, within Psyr_1426at 1616.066 kb on - strand, within Psyr_1426at 1616.081 kb on + strand, within Psyr_1426at 1616.129 kb on - strand, within Psyr_1426at 1616.145 kb on - strand, within Psyr_1426at 1616.174 kb on + strand, within Psyr_1426at 1616.174 kb on + strand, within Psyr_1426at 1616.175 kb on - strand, within Psyr_1426at 1616.175 kb on - strand, within Psyr_1426at 1616.187 kb on + strand, within Psyr_1426at 1616.187 kb on + strand, within Psyr_1426at 1616.188 kb on - strand, within Psyr_1426at 1616.201 kb on + strand, within Psyr_1426at 1616.342 kb on + strandat 1616.343 kb on - strandat 1616.367 kb on + strandat 1616.368 kb on - strandat 1616.368 kb on - strandat 1616.370 kb on + strandat 1616.371 kb on - strandat 1616.371 kb on - strandat 1616.371 kb on - strandat 1616.371 kb on - strandat 1616.371 kb on - strandat 1616.379 kb on + strandat 1616.380 kb on - strandat 1616.380 kb on - strandat 1616.380 kb on - strandat 1616.419 kb on + strandat 1616.500 kb on + strand, within Psyr_1427at 1616.500 kb on + strand, within Psyr_1427at 1616.501 kb on - strand, within Psyr_1427at 1616.561 kb on - strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.597 kb on + strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.598 kb on - strand, within Psyr_1427at 1616.603 kb on + strand, within Psyr_1427at 1616.603 kb on + strand, within Psyr_1427at 1616.603 kb on + strand, within Psyr_1427at 1616.603 kb on + strand, within Psyr_1427at 1616.637 kb on + strand, within Psyr_1427at 1616.638 kb on - strand, within Psyr_1427at 1616.638 kb on - strand, within Psyr_1427at 1616.638 kb on - strand, within Psyr_1427at 1616.638 kb on - strand, within Psyr_1427at 1616.653 kb on + strand, within Psyr_1427at 1616.653 kb on + strand, within Psyr_1427at 1616.654 kb on - strand, within Psyr_1427at 1616.654 kb on - strand, within Psyr_1427at 1616.716 kb on + strand, within Psyr_1427at 1616.716 kb on + strand, within Psyr_1427at 1616.717 kb on - strand, within Psyr_1427at 1616.717 kb on - strand, within Psyr_1427at 1616.741 kb on - strandat 1616.741 kb on - strandat 1616.741 kb on - strandat 1616.780 kb on + strandat 1616.780 kb on + strandat 1616.781 kb on - strandat 1616.781 kb on - strandat 1616.877 kb on + strandat 1616.877 kb on + strandat 1616.877 kb on + strandat 1616.878 kb on - strandat 1616.878 kb on - strandat 1616.878 kb on - strandat 1616.878 kb on - strandat 1616.878 kb on - strandat 1617.051 kb on + strand, within Psyr_1428at 1617.075 kb on + strand, within Psyr_1428at 1617.253 kb on + strand, within Psyr_1428at 1617.254 kb on - strand, within Psyr_1428at 1617.365 kb on + strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.425 kb on + strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.437 kb on + strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.470 kb on - strand, within Psyr_1428at 1617.482 kb on + strand, within Psyr_1428at 1617.492 kb on + strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.503 kb on + strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.530 kb on + strand, within Psyr_1428at 1617.530 kb on + strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.632 kb on + strand, within Psyr_1428at 1617.633 kb on - strand, within Psyr_1428at 1617.772 kb on + strand, within Psyr_1428at 1617.772 kb on + strand, within Psyr_1428

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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1,615,400 + +0.7
1,615,401 - Psyr_1426 0.35 +0.2
1,615,401 - Psyr_1426 0.35 -0.1
1,615,401 - Psyr_1426 0.35 -0.4
1,615,428 + Psyr_1426 0.37 +0.7
1,615,429 - Psyr_1426 0.37 -0.7
1,615,429 - Psyr_1426 0.37 +1.7
1,615,438 - Psyr_1426 0.37 -1.1
1,615,624 + Psyr_1426 0.49 +0.2
1,615,624 + Psyr_1426 0.49 -0.3
1,615,624 + Psyr_1426 0.49 -0.5
1,615,624 + Psyr_1426 0.49 +0.5
1,615,625 - Psyr_1426 0.50 +0.6
1,615,625 - Psyr_1426 0.50 -0.9
1,615,625 - Psyr_1426 0.50 +0.4
1,615,625 - Psyr_1426 0.50 -1.2
1,615,625 - Psyr_1426 0.50 +1.1
1,615,734 + -0.9
1,615,735 - Psyr_1426 0.57 +0.4
1,615,807 + Psyr_1426 0.61 -0.5
1,615,808 - Psyr_1426 0.61 -1.0
1,615,846 - Psyr_1426 0.64 -0.1
1,615,951 + Psyr_1426 0.71 +0.1
1,615,951 + Psyr_1426 0.71 +0.1
1,615,951 + Psyr_1426 0.71 +0.5
1,615,951 + Psyr_1426 0.71 -0.5
1,615,952 - Psyr_1426 0.71 +0.1
1,616,041 + Psyr_1426 0.77 -0.6
1,616,041 + Psyr_1426 0.77 -0.3
1,616,065 + Psyr_1426 0.78 -1.3
1,616,065 + Psyr_1426 0.78 -2.2
1,616,066 - Psyr_1426 0.78 -0.8
1,616,081 + Psyr_1426 0.79 +0.2
1,616,129 - Psyr_1426 0.82 +0.5
1,616,145 - Psyr_1426 0.83 +0.7
1,616,174 + Psyr_1426 0.85 -0.0
1,616,174 + Psyr_1426 0.85 +0.0
1,616,175 - Psyr_1426 0.85 +1.4
1,616,175 - Psyr_1426 0.85 +3.3
1,616,187 + Psyr_1426 0.86 -0.6
1,616,187 + Psyr_1426 0.86 +1.3
1,616,188 - Psyr_1426 0.86 -0.1
1,616,201 + Psyr_1426 0.87 -0.1
1,616,342 + +1.2
1,616,343 - -0.4
1,616,367 + +0.3
1,616,368 - +0.3
1,616,368 - -2.7
1,616,370 + +0.7
1,616,371 - +1.2
1,616,371 - +1.3
1,616,371 - +2.7
1,616,371 - +1.4
1,616,371 - +1.3
1,616,379 + -0.7
1,616,380 - +1.7
1,616,380 - -0.8
1,616,380 - -0.3
1,616,419 + -1.3
1,616,500 + Psyr_1427 0.27 -0.6
1,616,500 + Psyr_1427 0.27 +1.0
1,616,501 - Psyr_1427 0.27 -0.5
1,616,561 - Psyr_1427 0.43 +0.1
1,616,597 + Psyr_1427 0.53 -0.2
1,616,597 + Psyr_1427 0.53 -0.2
1,616,597 + Psyr_1427 0.53 +0.7
1,616,597 + Psyr_1427 0.53 -2.1
1,616,597 + Psyr_1427 0.53 +0.7
1,616,597 + Psyr_1427 0.53 -0.3
1,616,597 + Psyr_1427 0.53 -0.4
1,616,597 + Psyr_1427 0.53 +1.1
1,616,597 + Psyr_1427 0.53 -1.6
1,616,598 - Psyr_1427 0.53 -1.7
1,616,598 - Psyr_1427 0.53 +0.3
1,616,598 - Psyr_1427 0.53 -0.6
1,616,598 - Psyr_1427 0.53 +0.3
1,616,598 - Psyr_1427 0.53 +0.3
1,616,598 - Psyr_1427 0.53 -1.1
1,616,598 - Psyr_1427 0.53 -0.4
1,616,598 - Psyr_1427 0.53 +0.7
1,616,598 - Psyr_1427 0.53 +0.4
1,616,598 - Psyr_1427 0.53 +0.7
1,616,598 - Psyr_1427 0.53 -1.5
1,616,603 + Psyr_1427 0.55 -0.6
1,616,603 + Psyr_1427 0.55 -1.1
1,616,603 + Psyr_1427 0.55 -0.8
1,616,603 + Psyr_1427 0.55 -0.9
1,616,637 + Psyr_1427 0.64 +1.7
1,616,638 - Psyr_1427 0.64 -1.1
1,616,638 - Psyr_1427 0.64 -1.5
1,616,638 - Psyr_1427 0.64 +1.3
1,616,638 - Psyr_1427 0.64 -1.2
1,616,653 + Psyr_1427 0.68 +0.7
1,616,653 + Psyr_1427 0.68 +1.2
1,616,654 - Psyr_1427 0.68 +1.4
1,616,654 - Psyr_1427 0.68 +0.4
1,616,716 + Psyr_1427 0.85 -0.8
1,616,716 + Psyr_1427 0.85 +1.3
1,616,717 - Psyr_1427 0.85 -0.9
1,616,717 - Psyr_1427 0.85 +0.1
1,616,741 - -0.1
1,616,741 - +0.8
1,616,741 - +1.5
1,616,780 + -0.0
1,616,780 + -0.4
1,616,781 - -0.6
1,616,781 - -0.9
1,616,877 + +0.8
1,616,877 + +0.7
1,616,877 + +0.1
1,616,878 - +0.4
1,616,878 - -0.5
1,616,878 - -0.9
1,616,878 - +1.7
1,616,878 - -0.1
1,617,051 + Psyr_1428 0.20 +0.2
1,617,075 + Psyr_1428 0.22 +2.1
1,617,253 + Psyr_1428 0.35 +0.2
1,617,254 - Psyr_1428 0.35 +1.0
1,617,365 + Psyr_1428 0.43 +0.8
1,617,366 - Psyr_1428 0.43 -0.4
1,617,366 - Psyr_1428 0.43 -0.1
1,617,366 - Psyr_1428 0.43 +0.2
1,617,366 - Psyr_1428 0.43 +0.5
1,617,425 + Psyr_1428 0.48 +0.7
1,617,426 - Psyr_1428 0.48 +0.0
1,617,426 - Psyr_1428 0.48 +0.7
1,617,426 - Psyr_1428 0.48 -0.5
1,617,437 + Psyr_1428 0.48 -1.5
1,617,438 - Psyr_1428 0.48 +0.3
1,617,438 - Psyr_1428 0.48 -0.6
1,617,438 - Psyr_1428 0.48 +0.1
1,617,470 - Psyr_1428 0.51 -0.9
1,617,482 + Psyr_1428 0.52 -0.3
1,617,492 + Psyr_1428 0.52 +1.9
1,617,493 - Psyr_1428 0.52 +1.0
1,617,493 - Psyr_1428 0.52 -0.3
1,617,493 - Psyr_1428 0.52 +1.7
1,617,493 - Psyr_1428 0.52 -0.4
1,617,493 - Psyr_1428 0.52 +0.1
1,617,493 - Psyr_1428 0.52 -1.1
1,617,503 + Psyr_1428 0.53 +1.0
1,617,504 - Psyr_1428 0.53 -2.9
1,617,504 - Psyr_1428 0.53 -0.6
1,617,504 - Psyr_1428 0.53 +1.7
1,617,504 - Psyr_1428 0.53 +0.7
1,617,504 - Psyr_1428 0.53 -0.2
1,617,530 + Psyr_1428 0.55 +0.5
1,617,530 + Psyr_1428 0.55 -0.3
1,617,531 - Psyr_1428 0.55 -0.1
1,617,531 - Psyr_1428 0.55 -0.3
1,617,531 - Psyr_1428 0.55 -0.3
1,617,531 - Psyr_1428 0.55 +0.8
1,617,632 + Psyr_1428 0.63 -2.1
1,617,633 - Psyr_1428 0.63 +0.4
1,617,772 + Psyr_1428 0.73 -1.0
1,617,772 + Psyr_1428 0.73 -0.5

Or see this region's nucleotide sequence