Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0981

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0980 and Psyr_0981 are separated by 103 nucleotidesPsyr_0981 and Psyr_0982 overlap by 1 nucleotidesPsyr_0982 and Psyr_0983 are separated by 29 nucleotides Psyr_0980: Psyr_0980 - Phospholipid/glycerol acyltransferase, at 1,112,214 to 1,113,380 _0980 Psyr_0981: Psyr_0981 - conserved hypothetical protein, at 1,113,484 to 1,113,666 _0981 Psyr_0982: Psyr_0982 - conserved hypothetical protein, at 1,113,666 to 1,113,926 _0982 Psyr_0983: Psyr_0983 - Protein of unknown function DUF159, at 1,113,956 to 1,114,585 _0983 Position (kb) 1113 1114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.458 kb on - strandat 1113.458 kb on - strandat 1113.458 kb on - strandat 1113.464 kb on - strandat 1113.495 kb on - strandat 1113.503 kb on - strand, within Psyr_0981at 1113.503 kb on - strand, within Psyr_0981at 1113.547 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.862 kb on - strand, within Psyr_0982at 1113.862 kb on - strand, within Psyr_0982at 1113.867 kb on - strand, within Psyr_0982at 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.914 kb on - strandat 1113.914 kb on - strandat 1113.969 kb on - strandat 1114.043 kb on - strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.254 kb on - strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.583 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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1,113,456 - -0.1
1,113,456 - -0.2
1,113,456 - +1.7
1,113,456 - -1.1
1,113,456 - +0.9
1,113,456 - -1.1
1,113,458 - +0.2
1,113,458 - -0.9
1,113,458 - +2.3
1,113,464 - +2.6
1,113,495 - -2.6
1,113,503 - Psyr_0981 0.10 +0.2
1,113,503 - Psyr_0981 0.10 +0.9
1,113,547 - Psyr_0981 0.34 -0.6
1,113,569 - Psyr_0981 0.46 -0.3
1,113,569 - Psyr_0981 0.46 +2.0
1,113,569 - Psyr_0981 0.46 +1.0
1,113,569 - Psyr_0981 0.46 +1.4
1,113,569 - Psyr_0981 0.46 +1.0
1,113,569 - Psyr_0981 0.46 +0.0
1,113,569 - Psyr_0981 0.46 +0.6
1,113,679 - +0.8
1,113,679 - +0.1
1,113,679 - -0.5
1,113,679 - -0.2
1,113,679 - +3.2
1,113,679 - -0.2
1,113,861 + Psyr_0982 0.75 -0.5
1,113,861 + Psyr_0982 0.75 +0.4
1,113,861 + Psyr_0982 0.75 -0.3
1,113,861 + Psyr_0982 0.75 +0.9
1,113,861 + Psyr_0982 0.75 -0.3
1,113,862 - Psyr_0982 0.75 +0.8
1,113,862 - Psyr_0982 0.75 -0.5
1,113,867 - Psyr_0982 0.77 +0.5
1,113,913 + -0.2
1,113,913 + +0.7
1,113,913 + -0.0
1,113,913 + -0.6
1,113,914 - +0.0
1,113,914 - +0.3
1,113,969 - +0.5
1,114,043 - Psyr_0983 0.14 -0.1
1,114,253 + Psyr_0983 0.47 -0.7
1,114,253 + Psyr_0983 0.47 -1.3
1,114,253 + Psyr_0983 0.47 -1.1
1,114,254 - Psyr_0983 0.47 +0.6
1,114,360 + Psyr_0983 0.64 -1.2
1,114,360 + Psyr_0983 0.64 +0.7
1,114,360 + Psyr_0983 0.64 +0.1
1,114,360 + Psyr_0983 0.64 -0.6
1,114,360 + Psyr_0983 0.64 -0.5
1,114,360 + Psyr_0983 0.64 +0.6
1,114,360 + Psyr_0983 0.64 +0.3
1,114,360 + Psyr_0983 0.64 -1.3
1,114,361 - Psyr_0983 0.64 +1.1
1,114,361 - Psyr_0983 0.64 +0.1
1,114,361 - Psyr_0983 0.64 -0.4
1,114,361 - Psyr_0983 0.64 -1.0
1,114,361 - Psyr_0983 0.64 -0.5
1,114,361 - Psyr_0983 0.64 +0.4
1,114,361 - Psyr_0983 0.64 +0.1
1,114,364 + Psyr_0983 0.65 -0.0
1,114,364 + Psyr_0983 0.65 -0.4
1,114,364 + Psyr_0983 0.65 +1.2
1,114,364 + Psyr_0983 0.65 +2.1
1,114,364 + Psyr_0983 0.65 +1.9
1,114,364 + Psyr_0983 0.65 -0.4
1,114,364 + Psyr_0983 0.65 +0.5
1,114,365 - Psyr_0983 0.65 +0.6
1,114,365 - Psyr_0983 0.65 -0.3
1,114,365 - Psyr_0983 0.65 +0.9
1,114,365 - Psyr_0983 0.65 +0.3
1,114,365 - Psyr_0983 0.65 -1.2
1,114,583 + -0.0
1,114,638 + -0.1
1,114,638 + +0.8
1,114,638 + -0.3
1,114,638 + +0.3
1,114,638 + +1.0
1,114,639 - -1.0
1,114,639 - +1.3
1,114,639 - +0.1
1,114,639 - +0.0
1,114,647 + +1.3

Or see this region's nucleotide sequence