Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0971 and Psyr_0972 are separated by 66 nucleotides Psyr_0972 and Psyr_0973 are separated by 299 nucleotides Psyr_0973 and Psyr_0974 overlap by 4 nucleotides Psyr_0974 and Psyr_0975 are separated by 74 nucleotides
Psyr_0971: Psyr_0971 - conserved hypothetical protein, at 1,104,451 to 1,104,954
_0971
Psyr_0972: Psyr_0972 - conserved hypothetical protein, at 1,105,021 to 1,105,308
_0972
Psyr_0973: Psyr_0973 - amino acid ABC transporter membrane protein, PAAT family, at 1,105,608 to 1,106,450
_0973
Psyr_0974: Psyr_0974 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,106,447 to 1,107,268
_0974
Psyr_0975: Psyr_0975 - homocysteine S-methyltransferase, at 1,107,343 to 1,108,275
_0975
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1104.625 kb on + strand, within Psyr_0971 at 1104.625 kb on + strand, within Psyr_0971 at 1104.626 kb on - strand, within Psyr_0971 at 1104.626 kb on - strand, within Psyr_0971 at 1104.780 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.793 kb on + strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.794 kb on - strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.823 kb on + strand, within Psyr_0971 at 1104.824 kb on - strand, within Psyr_0971 at 1104.824 kb on - strand, within Psyr_0971 at 1104.824 kb on - strand, within Psyr_0971 at 1104.827 kb on - strand, within Psyr_0971 at 1104.880 kb on + strand, within Psyr_0971 at 1104.881 kb on - strand, within Psyr_0971 at 1104.898 kb on + strand, within Psyr_0971 at 1104.899 kb on - strand, within Psyr_0971 at 1105.026 kb on + strand at 1105.027 kb on - strand at 1105.032 kb on + strand at 1105.032 kb on + strand at 1105.032 kb on + strand at 1105.032 kb on + strand at 1105.033 kb on - strand at 1105.033 kb on - strand at 1105.033 kb on - strand at 1105.099 kb on + strand, within Psyr_0972 at 1105.099 kb on + strand, within Psyr_0972 at 1105.100 kb on - strand, within Psyr_0972 at 1105.107 kb on + strand, within Psyr_0972 at 1105.276 kb on + strand, within Psyr_0972 at 1105.276 kb on + strand, within Psyr_0972 at 1105.276 kb on + strand, within Psyr_0972 at 1105.276 kb on + strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.277 kb on - strand, within Psyr_0972 at 1105.391 kb on + strand at 1105.391 kb on + strand at 1105.391 kb on + strand at 1105.391 kb on + strand at 1105.391 kb on + strand at 1105.391 kb on + strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.392 kb on - strand at 1105.402 kb on + strand at 1105.503 kb on - strand at 1105.503 kb on - strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.571 kb on + strand at 1105.571 kb on + strand at 1105.624 kb on + strand at 1105.625 kb on - strand at 1105.723 kb on + strand, within Psyr_0973 at 1105.723 kb on + strand, within Psyr_0973 at 1105.724 kb on - strand, within Psyr_0973 at 1105.724 kb on - strand, within Psyr_0973 at 1105.724 kb on - strand, within Psyr_0973 at 1105.724 kb on - strand, within Psyr_0973 at 1105.744 kb on + strand, within Psyr_0973 at 1105.972 kb on + strand, within Psyr_0973 at 1105.972 kb on + strand, within Psyr_0973 at 1105.981 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.104 kb on + strand, within Psyr_0973 at 1106.104 kb on + strand, within Psyr_0973 at 1106.105 kb on - strand, within Psyr_0973 at 1106.356 kb on + strand, within Psyr_0973 at 1106.589 kb on + strand, within Psyr_0974 at 1106.589 kb on + strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.728 kb on - strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.817 kb on + strand, within Psyr_0974 at 1106.818 kb on - strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.922 kb on + strand, within Psyr_0974 at 1106.923 kb on - strand, within Psyr_0974 at 1106.923 kb on - strand, within Psyr_0974 at 1107.261 kb on + strand at 1107.272 kb on + strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.293 kb on + strand at 1107.316 kb on - strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.320 kb on - strand at 1107.320 kb on - strand at 1107.320 kb on - strand at 1107.324 kb on + strand at 1107.324 kb on + strand at 1107.359 kb on + strand at 1107.359 kb on + strand at 1107.360 kb on - strand at 1107.363 kb on + strand at 1107.363 kb on + strand at 1107.364 kb on - strand at 1107.364 kb on - strand at 1107.365 kb on + strand at 1107.365 kb on + strand at 1107.365 kb on + strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.378 kb on + strand at 1107.378 kb on + strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.390 kb on + strand at 1107.390 kb on + strand at 1107.390 kb on + strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 1,104,625 + Psyr_0971 0.35 +0.1 1,104,625 + Psyr_0971 0.35 -0.9 1,104,626 - Psyr_0971 0.35 +1.6 1,104,626 - Psyr_0971 0.35 +0.0 1,104,780 + Psyr_0971 0.65 +0.1 1,104,793 + Psyr_0971 0.68 -0.1 1,104,793 + Psyr_0971 0.68 +0.3 1,104,793 + Psyr_0971 0.68 -0.8 1,104,793 + Psyr_0971 0.68 +0.4 1,104,793 + Psyr_0971 0.68 -0.0 1,104,793 + Psyr_0971 0.68 -2.4 1,104,793 + Psyr_0971 0.68 +0.1 1,104,793 + Psyr_0971 0.68 -0.6 1,104,793 + Psyr_0971 0.68 -0.3 1,104,794 - Psyr_0971 0.68 -0.2 1,104,794 - Psyr_0971 0.68 -0.5 1,104,794 - Psyr_0971 0.68 -0.1 1,104,794 - Psyr_0971 0.68 -0.2 1,104,794 - Psyr_0971 0.68 -3.4 1,104,794 - Psyr_0971 0.68 -0.9 1,104,794 - Psyr_0971 0.68 +1.3 1,104,794 - Psyr_0971 0.68 -0.9 1,104,794 - Psyr_0971 0.68 +0.7 1,104,794 - Psyr_0971 0.68 +0.7 1,104,794 - Psyr_0971 0.68 -2.7 1,104,794 - Psyr_0971 0.68 -0.2 1,104,823 + Psyr_0971 0.74 -0.6 1,104,823 + Psyr_0971 0.74 -0.4 1,104,823 + Psyr_0971 0.74 +1.1 1,104,823 + Psyr_0971 0.74 +0.0 1,104,823 + Psyr_0971 0.74 -0.3 1,104,823 + Psyr_0971 0.74 -1.3 1,104,824 - Psyr_0971 0.74 +1.1 1,104,824 - Psyr_0971 0.74 -0.5 1,104,824 - Psyr_0971 0.74 -0.6 1,104,827 - Psyr_0971 0.75 +0.1 1,104,880 + Psyr_0971 0.85 -1.1 1,104,881 - Psyr_0971 0.85 -0.1 1,104,898 + Psyr_0971 0.89 +1.0 1,104,899 - Psyr_0971 0.89 +0.3 1,105,026 + +0.3 1,105,027 - -1.1 1,105,032 + +1.1 1,105,032 + +0.0 1,105,032 + -0.0 1,105,032 + +0.7 1,105,033 - +0.2 1,105,033 - -3.0 1,105,033 - +0.6 1,105,099 + Psyr_0972 0.27 -1.7 1,105,099 + Psyr_0972 0.27 -1.7 1,105,100 - Psyr_0972 0.27 -0.3 1,105,107 + Psyr_0972 0.30 +0.5 1,105,276 + Psyr_0972 0.89 +0.2 1,105,276 + Psyr_0972 0.89 +0.5 1,105,276 + Psyr_0972 0.89 -1.3 1,105,276 + Psyr_0972 0.89 +0.6 1,105,277 - Psyr_0972 0.89 +0.1 1,105,277 - Psyr_0972 0.89 -0.4 1,105,277 - Psyr_0972 0.89 +0.2 1,105,277 - Psyr_0972 0.89 -0.4 1,105,277 - Psyr_0972 0.89 +0.7 1,105,277 - Psyr_0972 0.89 -0.2 1,105,277 - Psyr_0972 0.89 +0.9 1,105,391 + -0.6 1,105,391 + +0.7 1,105,391 + -2.2 1,105,391 + +2.0 1,105,391 + -0.8 1,105,391 + +0.2 1,105,392 - -0.3 1,105,392 - -1.4 1,105,392 - +0.5 1,105,392 - -2.7 1,105,392 - -0.8 1,105,392 - -0.2 1,105,392 - +0.2 1,105,392 - +0.3 1,105,392 - +0.1 1,105,392 - +1.3 1,105,392 - -0.4 1,105,392 - -1.4 1,105,392 - -1.3 1,105,402 + -0.6 1,105,503 - -1.6 1,105,503 - -1.0 1,105,504 + -0.1 1,105,504 + +0.1 1,105,504 + -2.6 1,105,504 + -0.8 1,105,504 + -0.4 1,105,504 + +0.1 1,105,504 + +1.0 1,105,505 - +1.7 1,105,505 - -3.6 1,105,505 - -0.8 1,105,505 - +0.1 1,105,505 - +2.0 1,105,505 - +0.5 1,105,569 + +1.0 1,105,569 + +0.8 1,105,569 + -0.3 1,105,569 + -1.4 1,105,569 + -0.6 1,105,569 + -0.4 1,105,569 + +2.3 1,105,569 + -0.8 1,105,569 + +1.4 1,105,570 - +1.2 1,105,570 - -0.4 1,105,570 - -1.3 1,105,570 - +0.9 1,105,570 - +0.1 1,105,571 + -1.6 1,105,571 + -2.3 1,105,624 + -0.6 1,105,625 - +1.0 1,105,723 + Psyr_0973 0.14 +1.1 1,105,723 + Psyr_0973 0.14 +0.7 1,105,724 - Psyr_0973 0.14 -2.6 1,105,724 - Psyr_0973 0.14 +1.7 1,105,724 - Psyr_0973 0.14 -0.5 1,105,724 - Psyr_0973 0.14 +0.8 1,105,744 + Psyr_0973 0.16 -0.1 1,105,972 + Psyr_0973 0.43 +1.6 1,105,972 + Psyr_0973 0.43 -0.6 1,105,981 + Psyr_0973 0.44 +0.1 1,106,053 + Psyr_0973 0.53 -0.9 1,106,053 + Psyr_0973 0.53 +0.9 1,106,053 + Psyr_0973 0.53 -0.3 1,106,053 + Psyr_0973 0.53 +1.1 1,106,053 + Psyr_0973 0.53 -1.0 1,106,053 + Psyr_0973 0.53 -0.0 1,106,053 + Psyr_0973 0.53 -1.1 1,106,053 + Psyr_0973 0.53 +1.4 1,106,054 - Psyr_0973 0.53 +0.1 1,106,054 - Psyr_0973 0.53 +0.6 1,106,054 - Psyr_0973 0.53 +0.3 1,106,054 - Psyr_0973 0.53 +2.1 1,106,054 - Psyr_0973 0.53 -0.4 1,106,054 - Psyr_0973 0.53 +0.3 1,106,054 - Psyr_0973 0.53 -0.5 1,106,104 + Psyr_0973 0.59 +0.0 1,106,104 + Psyr_0973 0.59 +0.9 1,106,105 - Psyr_0973 0.59 +2.6 1,106,356 + Psyr_0973 0.89 +0.8 1,106,589 + Psyr_0974 0.17 -0.7 1,106,589 + Psyr_0974 0.17 -0.6 1,106,590 - Psyr_0974 0.17 -0.5 1,106,590 - Psyr_0974 0.17 -1.9 1,106,590 - Psyr_0974 0.17 +0.9 1,106,590 - Psyr_0974 0.17 +0.8 1,106,590 - Psyr_0974 0.17 -0.1 1,106,590 - Psyr_0974 0.17 +0.7 1,106,728 - Psyr_0974 0.34 -0.2 1,106,741 + Psyr_0974 0.36 +0.7 1,106,741 + Psyr_0974 0.36 -0.2 1,106,741 + Psyr_0974 0.36 -0.7 1,106,741 + Psyr_0974 0.36 -0.6 1,106,742 - Psyr_0974 0.36 -0.4 1,106,742 - Psyr_0974 0.36 -1.3 1,106,742 - Psyr_0974 0.36 +0.9 1,106,742 - Psyr_0974 0.36 -1.3 1,106,742 - Psyr_0974 0.36 +0.4 1,106,742 - Psyr_0974 0.36 -0.4 1,106,817 + Psyr_0974 0.45 -0.9 1,106,818 - Psyr_0974 0.45 -0.4 1,106,919 + Psyr_0974 0.57 +1.1 1,106,920 - Psyr_0974 0.58 +1.5 1,106,920 - Psyr_0974 0.58 -0.4 1,106,920 - Psyr_0974 0.58 +0.8 1,106,922 + Psyr_0974 0.58 -1.5 1,106,923 - Psyr_0974 0.58 +0.3 1,106,923 - Psyr_0974 0.58 -0.2 1,107,261 + +1.9 1,107,272 + -1.1 1,107,273 - -2.5 1,107,273 - -1.1 1,107,293 + +0.6 1,107,316 - -1.0 1,107,319 + +0.5 1,107,319 + -0.2 1,107,320 - +0.9 1,107,320 - +0.8 1,107,320 - +0.7 1,107,324 + +1.2 1,107,324 + +1.3 1,107,359 + -0.9 1,107,359 + -1.7 1,107,360 - +1.7 1,107,363 + +1.1 1,107,363 + +1.0 1,107,364 - -0.1 1,107,364 - +0.5 1,107,365 + -1.1 1,107,365 + +0.2 1,107,365 + +1.1 1,107,366 - -0.2 1,107,366 - -0.5 1,107,366 - +0.7 1,107,366 - +0.2 1,107,366 - +0.7 1,107,366 - +1.0 1,107,378 + +1.9 1,107,378 + -0.9 1,107,379 - -1.3 1,107,379 - +0.6 1,107,379 - +1.2 1,107,379 - +0.3 1,107,379 - -0.6 1,107,390 + +0.9 1,107,390 + +1.3 1,107,390 + -0.3 1,107,391 - -0.2 1,107,391 - -3.1 1,107,391 - -0.2 1,107,391 - -1.2 1,107,391 - +0.2 1,107,398 + +1.0 1,107,398 + +1.7 1,107,398 + +0.9 1,107,399 - +0.2 1,107,399 - +0.1 1,107,399 - -0.4 1,107,399 - +0.5
Or see this region's nucleotide sequence