Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0809

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0807 and Psyr_0808 are separated by 46 nucleotidesPsyr_0808 and Psyr_0809 overlap by 4 nucleotidesPsyr_0809 and Psyr_0810 are separated by 51 nucleotidesPsyr_0810 and Psyr_0811 are separated by 26 nucleotides Psyr_0807: Psyr_0807 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 912,869 to 913,615 _0807 Psyr_0808: Psyr_0808 - stress protein, at 913,662 to 914,255 _0808 Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Psyr_0810: Psyr_0810 - Tellurite resistance TerB, at 915,473 to 915,922 _0810 Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Position (kb) 914 915 916Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 913.323 kb on + strand, within Psyr_0807at 913.324 kb on - strand, within Psyr_0807at 913.324 kb on - strand, within Psyr_0807at 913.553 kb on + strandat 913.556 kb on - strandat 913.556 kb on - strandat 913.578 kb on + strandat 913.622 kb on - strandat 913.715 kb on + strandat 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 914.063 kb on + strand, within Psyr_0808at 914.063 kb on + strand, within Psyr_0808at 914.064 kb on - strand, within Psyr_0808at 914.085 kb on - strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.146 kb on - strand, within Psyr_0808at 914.243 kb on + strandat 914.251 kb on + strandat 914.252 kb on - strandat 914.252 kb on - strandat 914.314 kb on + strandat 914.315 kb on - strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.473 kb on - strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.918 kb on - strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.167 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.376 kb on + strandat 915.384 kb on - strandat 915.419 kb on + strandat 915.419 kb on + strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.920 kb on + strandat 915.921 kb on - strandat 915.933 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.947 kb on - strandat 915.947 kb on - strandat 915.947 kb on - strandat 915.965 kb on + strandat 915.966 kb on - strandat 916.129 kb on + strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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913,323 + Psyr_0807 0.61 -0.5
913,324 - Psyr_0807 0.61 +0.8
913,324 - Psyr_0807 0.61 -2.0
913,553 + +0.4
913,556 - -0.5
913,556 - -1.5
913,578 + -0.2
913,622 - +0.8
913,715 + +0.4
913,995 + Psyr_0808 0.56 +0.2
913,995 + Psyr_0808 0.56 -1.8
913,995 + Psyr_0808 0.56 -0.2
913,996 - Psyr_0808 0.56 -0.2
913,996 - Psyr_0808 0.56 -0.7
913,996 - Psyr_0808 0.56 +2.7
913,996 - Psyr_0808 0.56 +1.0
913,996 - Psyr_0808 0.56 -0.5
913,996 - Psyr_0808 0.56 -0.6
913,996 - Psyr_0808 0.56 +0.8
913,996 - Psyr_0808 0.56 +0.2
914,063 + Psyr_0808 0.68 -0.0
914,063 + Psyr_0808 0.68 +0.8
914,064 - Psyr_0808 0.68 +0.2
914,085 - Psyr_0808 0.71 +1.8
914,145 + Psyr_0808 0.81 -0.8
914,145 + Psyr_0808 0.81 +0.1
914,145 + Psyr_0808 0.81 +1.0
914,146 - Psyr_0808 0.81 -0.2
914,243 + -0.0
914,251 + +0.0
914,252 - +0.1
914,252 - -0.6
914,314 + +0.9
914,315 - +0.4
914,318 + +0.5
914,318 + -0.2
914,318 + +0.5
914,473 - Psyr_0809 0.19 +1.4
914,537 + Psyr_0809 0.24 +0.7
914,537 + Psyr_0809 0.24 -1.4
914,537 + Psyr_0809 0.24 +0.1
914,537 + Psyr_0809 0.24 -0.1
914,537 + Psyr_0809 0.24 +1.3
914,537 + Psyr_0809 0.24 -1.0
914,537 + Psyr_0809 0.24 -0.0
914,537 + Psyr_0809 0.24 +0.9
914,538 - Psyr_0809 0.24 +0.1
914,538 - Psyr_0809 0.24 +0.4
914,538 - Psyr_0809 0.24 -1.5
914,538 - Psyr_0809 0.24 +0.6
914,538 - Psyr_0809 0.24 -1.9
914,538 - Psyr_0809 0.24 +0.6
914,538 - Psyr_0809 0.24 -0.8
914,538 - Psyr_0809 0.24 +1.8
914,658 - Psyr_0809 0.35 +2.7
914,918 - Psyr_0809 0.57 -0.5
914,959 + Psyr_0809 0.60 -1.1
914,959 + Psyr_0809 0.60 +0.2
914,959 + Psyr_0809 0.60 -0.6
914,959 + Psyr_0809 0.60 +0.1
914,960 - Psyr_0809 0.61 -0.9
914,960 - Psyr_0809 0.61 +1.3
914,979 + Psyr_0809 0.62 +0.4
914,979 + Psyr_0809 0.62 -2.4
914,979 + Psyr_0809 0.62 -1.0
914,979 + Psyr_0809 0.62 +0.1
914,979 + Psyr_0809 0.62 -1.8
914,979 + Psyr_0809 0.62 -0.6
914,979 + Psyr_0809 0.62 -0.1
914,979 + Psyr_0809 0.62 -0.1
914,980 - Psyr_0809 0.62 -1.1
914,980 - Psyr_0809 0.62 +0.5
914,980 - Psyr_0809 0.62 -0.7
914,980 - Psyr_0809 0.62 -0.7
914,980 - Psyr_0809 0.62 +0.8
914,980 - Psyr_0809 0.62 +0.5
914,980 - Psyr_0809 0.62 +0.4
914,980 - Psyr_0809 0.62 -0.4
915,124 + Psyr_0809 0.75 +0.8
915,167 + Psyr_0809 0.78 -0.7
915,179 + Psyr_0809 0.79 -0.2
915,179 + Psyr_0809 0.79 +1.0
915,179 + Psyr_0809 0.79 +1.4
915,179 + Psyr_0809 0.79 +0.9
915,179 + Psyr_0809 0.79 +1.0
915,179 + Psyr_0809 0.79 -2.7
915,179 + Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 +0.8
915,180 - Psyr_0809 0.79 -3.9
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 -1.4
915,180 - Psyr_0809 0.79 -0.3
915,180 - Psyr_0809 0.79 -2.0
915,180 - Psyr_0809 0.79 +0.5
915,180 - Psyr_0809 0.79 +0.0
915,180 - Psyr_0809 0.79 -0.8
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 -1.1
915,180 - Psyr_0809 0.79 +0.0
915,376 + -3.6
915,384 - +2.0
915,419 + +1.1
915,419 + -0.7
915,420 - +0.3
915,420 - -0.0
915,420 - +0.4
915,420 - -0.5
915,420 - +0.3
915,420 - -1.2
915,420 - +1.8
915,434 + -0.5
915,435 - -0.8
915,468 + -0.3
915,468 + +0.8
915,468 + +0.8
915,468 + -0.3
915,468 + -0.3
915,468 + -2.5
915,469 - -0.7
915,469 - +0.1
915,469 - +0.1
915,469 - +0.4
915,920 + +0.3
915,921 - -0.2
915,933 + -0.7
915,946 + +0.8
915,946 + -0.0
915,946 + +0.8
915,947 - +0.4
915,947 - -0.8
915,947 - -0.2
915,965 + -0.9
915,966 - -0.7
916,129 + Psyr_0811 0.17 -0.9
916,130 - Psyr_0811 0.17 +0.8
916,130 - Psyr_0811 0.17 -1.4
916,130 - Psyr_0811 0.17 +0.7
916,130 - Psyr_0811 0.17 +0.2
916,361 + Psyr_0811 0.40 +0.1
916,362 - Psyr_0811 0.40 -0.3
916,362 - Psyr_0811 0.40 +1.3
916,362 - Psyr_0811 0.40 -1.5
916,364 + Psyr_0811 0.40 -0.6
916,364 + Psyr_0811 0.40 +0.5
916,364 + Psyr_0811 0.40 -0.3
916,365 - Psyr_0811 0.40 -0.5
916,365 - Psyr_0811 0.40 -1.5
916,365 - Psyr_0811 0.40 -2.2
916,365 - Psyr_0811 0.40 -1.8

Or see this region's nucleotide sequence