Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0754 and Psyr_0755 are separated by 707 nucleotides Psyr_0755 and Psyr_0756 are separated by 377 nucleotides
Psyr_0754: Psyr_0754 - Levansucrase, at 858,095 to 859,390
_0754
Psyr_0755: Psyr_0755 - conserved hypothetical protein, at 860,098 to 860,538
_0755
Psyr_0756: Psyr_0756 - indole-3-glycerol phosphate synthase, at 860,916 to 861,716
_0756
Position (kb) 860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 859.104 kb on + strand, within Psyr_0754 at 859.104 kb on + strand, within Psyr_0754 at 859.104 kb on + strand, within Psyr_0754 at 859.105 kb on - strand, within Psyr_0754 at 859.217 kb on + strand, within Psyr_0754 at 859.223 kb on - strand, within Psyr_0754 at 859.326 kb on + strand at 859.326 kb on + strand at 859.327 kb on - strand at 859.327 kb on - strand at 859.343 kb on + strand at 859.367 kb on + strand at 859.381 kb on + strand at 859.382 kb on - strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.390 kb on + strand at 859.391 kb on - strand at 859.391 kb on - strand at 859.391 kb on - strand at 859.391 kb on - strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.407 kb on + strand at 859.407 kb on + strand at 859.407 kb on + strand at 859.408 kb on - strand at 859.437 kb on + strand at 859.437 kb on + strand at 859.438 kb on - strand at 859.529 kb on + strand at 859.530 kb on - strand at 859.530 kb on - strand at 859.605 kb on + strand at 859.605 kb on + strand at 859.606 kb on - strand at 859.606 kb on - strand at 859.659 kb on + strand at 859.660 kb on - strand at 859.885 kb on - strand at 859.885 kb on - strand at 859.885 kb on - strand at 859.885 kb on - strand at 859.968 kb on - strand at 860.100 kb on - strand at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.243 kb on + strand, within Psyr_0755 at 860.243 kb on + strand, within Psyr_0755 at 860.244 kb on - strand, within Psyr_0755 at 860.284 kb on + strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.433 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.523 kb on - strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.543 kb on - strand at 860.597 kb on + strand at 860.598 kb on - strand at 860.609 kb on + strand at 860.610 kb on - strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.631 kb on - strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.688 kb on + strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.713 kb on + strand at 860.714 kb on - strand at 860.727 kb on - strand at 860.733 kb on + strand at 860.733 kb on + strand at 860.734 kb on - strand at 860.738 kb on + strand at 860.738 kb on + strand at 860.739 kb on - strand at 860.739 kb on - strand at 860.739 kb on - strand at 860.748 kb on + strand at 860.816 kb on + strand at 860.880 kb on - strand at 860.880 kb on - strand at 860.885 kb on - strand at 860.887 kb on + strand at 860.902 kb on + strand at 860.930 kb on - strand at 860.930 kb on - strand at 860.946 kb on + strand at 860.962 kb on + strand at 860.963 kb on - strand at 860.963 kb on - strand at 861.039 kb on + strand, within Psyr_0756 at 861.041 kb on + strand, within Psyr_0756 at 861.188 kb on - strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.337 kb on + strand, within Psyr_0756 at 861.337 kb on + strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.515 kb on - strand, within Psyr_0756 at 861.515 kb on - strand, within Psyr_0756
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 859,104 + Psyr_0754 0.78 -0.1 859,104 + Psyr_0754 0.78 +0.5 859,104 + Psyr_0754 0.78 -0.0 859,105 - Psyr_0754 0.78 +0.6 859,217 + Psyr_0754 0.87 +1.1 859,223 - Psyr_0754 0.87 +1.8 859,326 + -0.4 859,326 + +0.6 859,327 - +0.1 859,327 - -0.8 859,343 + -0.4 859,367 + +0.7 859,381 + +0.2 859,382 - +0.5 859,390 + -0.3 859,390 + +0.8 859,390 + -0.6 859,390 + -0.0 859,390 + +3.1 859,390 + -0.2 859,390 + -0.3 859,390 + +1.0 859,391 - +0.4 859,391 - -0.9 859,391 - +1.6 859,391 - +0.7 859,403 + -0.2 859,403 + +0.4 859,403 + -0.2 859,403 + +0.6 859,403 + -0.6 859,404 - +0.1 859,404 - +0.8 859,404 - +0.6 859,404 - -1.0 859,407 + -1.7 859,407 + -0.6 859,407 + +0.6 859,408 - +0.5 859,437 + +0.1 859,437 + -0.9 859,438 - -0.2 859,529 + +0.3 859,530 - -0.7 859,530 - -1.1 859,605 + +0.9 859,605 + +1.3 859,606 - -1.8 859,606 - +2.1 859,659 + -0.3 859,660 - +0.1 859,885 - +2.1 859,885 - -1.2 859,885 - -1.2 859,885 - -1.0 859,968 - +1.1 860,100 - -0.5 860,198 + Psyr_0755 0.23 +0.5 860,198 + Psyr_0755 0.23 -1.5 860,198 + Psyr_0755 0.23 -1.6 860,199 - Psyr_0755 0.23 -0.6 860,199 - Psyr_0755 0.23 -1.4 860,199 - Psyr_0755 0.23 -0.3 860,243 + Psyr_0755 0.33 +0.6 860,243 + Psyr_0755 0.33 +0.1 860,244 - Psyr_0755 0.33 +0.5 860,284 + Psyr_0755 0.42 -1.0 860,285 - Psyr_0755 0.42 -1.2 860,285 - Psyr_0755 0.42 +0.9 860,390 + Psyr_0755 0.66 -0.5 860,390 + Psyr_0755 0.66 -0.2 860,390 + Psyr_0755 0.66 -0.9 860,390 + Psyr_0755 0.66 -0.8 860,391 - Psyr_0755 0.66 -2.2 860,391 - Psyr_0755 0.66 -0.2 860,391 - Psyr_0755 0.66 +0.5 860,395 - Psyr_0755 0.67 -0.2 860,433 + Psyr_0755 0.76 +1.5 860,448 + Psyr_0755 0.79 -1.3 860,448 + Psyr_0755 0.79 +0.8 860,448 + Psyr_0755 0.79 -0.4 860,448 + Psyr_0755 0.79 +0.4 860,448 + Psyr_0755 0.79 +0.0 860,449 - Psyr_0755 0.80 +1.1 860,449 - Psyr_0755 0.80 -0.2 860,449 - Psyr_0755 0.80 -0.9 860,449 - Psyr_0755 0.80 -0.4 860,523 - -0.0 860,542 + +0.2 860,542 + +0.7 860,542 + +1.1 860,542 + -1.7 860,543 - -2.4 860,597 + +0.9 860,598 - +0.3 860,609 + -0.4 860,610 - -0.1 860,628 + +0.5 860,628 + -2.8 860,628 + -0.4 860,628 + +0.5 860,628 + -0.7 860,629 - -0.5 860,629 - +0.3 860,629 - +0.1 860,629 - -0.1 860,629 - +1.1 860,629 - -0.0 860,629 - +0.5 860,629 - +0.3 860,629 - -0.0 860,629 - -1.0 860,631 - +0.6 860,684 + +0.7 860,684 + +0.2 860,684 + +1.5 860,684 + -0.4 860,685 - +0.4 860,685 - -0.3 860,685 - +0.9 860,688 + +0.6 860,689 - +0.7 860,689 - -0.5 860,689 - +1.4 860,689 - +1.5 860,713 + +0.3 860,714 - +0.3 860,727 - -0.2 860,733 + -1.5 860,733 + +0.9 860,734 - +1.1 860,738 + +1.1 860,738 + +0.8 860,739 - +0.9 860,739 - -1.1 860,739 - -1.8 860,748 + -1.4 860,816 + +0.1 860,880 - -0.2 860,880 - -3.1 860,885 - +0.2 860,887 + -0.9 860,902 + +0.5 860,930 - -0.8 860,930 - -0.8 860,946 + -0.8 860,962 + +2.4 860,963 - -0.4 860,963 - +0.2 861,039 + Psyr_0756 0.15 -0.5 861,041 + Psyr_0756 0.16 +0.2 861,188 - Psyr_0756 0.34 +1.7 861,293 + Psyr_0756 0.47 +0.9 861,293 + Psyr_0756 0.47 -3.3 861,293 + Psyr_0756 0.47 +2.1 861,293 + Psyr_0756 0.47 +0.6 861,293 + Psyr_0756 0.47 -0.8 861,293 + Psyr_0756 0.47 +1.6 861,294 - Psyr_0756 0.47 -0.5 861,294 - Psyr_0756 0.47 -0.4 861,294 - Psyr_0756 0.47 -0.8 861,294 - Psyr_0756 0.47 -0.5 861,297 + Psyr_0756 0.48 +0.2 861,297 + Psyr_0756 0.48 -1.0 861,298 - Psyr_0756 0.48 +0.2 861,298 - Psyr_0756 0.48 +1.6 861,298 - Psyr_0756 0.48 -0.2 861,298 - Psyr_0756 0.48 -0.3 861,306 + Psyr_0756 0.49 -0.5 861,306 + Psyr_0756 0.49 -0.0 861,306 + Psyr_0756 0.49 -0.8 861,307 - Psyr_0756 0.49 -0.3 861,307 - Psyr_0756 0.49 +0.7 861,307 - Psyr_0756 0.49 -0.2 861,307 - Psyr_0756 0.49 +0.1 861,337 + Psyr_0756 0.53 -0.5 861,337 + Psyr_0756 0.53 -0.2 861,338 - Psyr_0756 0.53 -0.8 861,338 - Psyr_0756 0.53 -1.1 861,338 - Psyr_0756 0.53 +1.6 861,503 + Psyr_0756 0.73 -0.4 861,503 + Psyr_0756 0.73 +0.8 861,504 - Psyr_0756 0.73 -0.6 861,504 - Psyr_0756 0.73 +0.2 861,504 - Psyr_0756 0.73 +0.3 861,504 - Psyr_0756 0.73 -0.7 861,514 + Psyr_0756 0.75 +0.1 861,514 + Psyr_0756 0.75 -0.3 861,515 - Psyr_0756 0.75 -1.8 861,515 - Psyr_0756 0.75 -0.7
Or see this region's nucleotide sequence