Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004820

Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Lumazine 5 mM
1,026,642	+		ABIE53_004818	0.76	-0.7
1,026,642	+		ABIE53_004818	0.76	-0.1
1,026,808	+				+0.5
1,026,808	+				-0.8
1,026,809	-				-0.1
1,026,809	-				-0.5
1,026,809	-				+0.6
1,026,809	-				+0.9
1,027,125	+		ABIE53_004819	0.71	-0.4
1,027,125	+		ABIE53_004819	0.71	-1.1
1,027,125	+		ABIE53_004819	0.71	-1.1
1,027,125	+		ABIE53_004819	0.71	-0.1
1,027,125	+		ABIE53_004819	0.71	+0.2
1,027,125	+		ABIE53_004819	0.71	+1.5
1,027,125	+		ABIE53_004819	0.71	+4.2
1,027,125	+		ABIE53_004819	0.71	-0.5
1,027,125	+		ABIE53_004819	0.71	-1.4
1,027,125	+		ABIE53_004819	0.71	-0.7
1,027,126	-		ABIE53_004819	0.72	+0.3
1,027,126	-		ABIE53_004819	0.72	-0.4
1,027,126	-		ABIE53_004819	0.72	-0.9
1,027,126	-		ABIE53_004819	0.72	+0.3
1,027,126	-		ABIE53_004819	0.72	-0.2
1,027,126	-		ABIE53_004819	0.72	-2.1
1,027,188	+				-1.7
1,027,188	+				-1.1
1,027,188	+				+0.2
1,027,189	-				+0.1
1,027,189	-				+0.4
1,027,189	-				-1.7
1,027,189	-				+2.1
1,027,189	-				-1.1
1,027,189	-				+0.3
1,027,207	+				-1.7
1,027,222	+				+0.9
1,027,222	+				-1.2
1,027,222	+				-0.1
1,027,222	+				-0.7
1,027,222	+				+0.6
1,027,222	+				+1.6
1,027,222	+				-0.4
1,027,222	+				+0.1
1,027,222	+				-0.9
1,027,222	+				-2.3
1,027,222	+				-0.8
1,027,222	+				-0.2
1,027,222	+				+0.3
1,027,222	+				+1.6
1,027,222	+				+0.6
1,027,222	+				+0.7
1,027,222	+				-1.0
1,027,222	+				+1.0
1,027,222	+				-0.8
1,027,222	+				+0.6
1,027,222	+				-1.9
1,027,223	-				+2.2
1,027,223	-				-0.8
1,027,223	-				+0.9
1,027,223	-				-0.5
1,027,223	-				-1.9
1,027,223	-				+0.4
1,027,223	-				+0.1
1,027,223	-				-1.4
1,027,223	-				+0.1
1,027,223	-				+0.6
1,027,223	-				+0.3
1,027,223	-				+0.9
1,027,223	-				+1.2
1,027,223	-				+0.3
1,027,223	-				+2.5
1,027,223	-				-0.2
1,027,223	-				-0.3
1,027,248	-				-0.1
1,027,248	-				+0.9
1,027,261	+				-0.2
1,027,261	+				+0.2
1,027,261	+				-0.6
1,027,261	+				+1.1
1,027,261	+				-0.7
1,027,261	+				-0.2
1,027,262	-				-0.5
1,027,262	-				-1.3
1,027,262	-				+0.3
1,027,322	+				-0.1
1,027,322	+				-0.5
1,027,322	+				+0.3
1,027,323	-				+1.3
1,027,323	-				-1.0
1,027,323	-				-0.6
1,027,323	-				+0.9
1,027,323	-				+0.3
1,027,361	+				+1.8
1,027,361	+				-0.1
1,027,361	+				-1.1
1,027,361	+				-0.7
1,027,361	+				-0.5
1,027,361	+				+0.7
1,027,361	+				-2.6
1,027,361	+				-0.8
1,027,361	+				+1.2
1,027,361	+				-0.9
1,027,361	+				-2.6
1,027,361	+				-0.6
1,027,361	+				+0.9
1,027,361	+				+0.3
1,027,361	+				-0.9
1,027,361	+				+1.2
1,027,361	+				+0.9
1,027,361	+				+0.1
1,027,362	-				+0.9
1,027,362	-				+1.9
1,027,362	-				+0.8
1,027,362	-				+1.3
1,027,362	-				+0.5
1,027,362	-				+0.7
1,027,362	-				+0.6
1,027,362	-				+0.3
1,027,362	-				-0.4
1,027,362	-				-0.2
1,027,362	-				+0.1
1,027,362	-				+0.3
1,027,362	-				+1.8
1,027,362	-				+0.7
1,027,362	-				+0.2
1,027,362	-				-0.2
1,027,362	-				+1.1
1,027,362	-				+1.1
1,027,362	-				+0.1
1,027,362	-				-0.7
1,027,362	-				-0.7
1,027,363	+				+0.1
1,027,363	+				-0.6
1,027,363	+				-1.9
1,027,364	-				+0.3
1,027,364	-				+0.2
1,027,364	-				+0.9
1,027,364	-				+1.9
1,027,364	-				+0.9
1,027,364	-				+0.1
1,027,419	+				+2.8
1,027,419	+				+1.5
1,027,419	+				+1.6
1,027,419	+				+2.4
1,027,420	-				+0.3
1,027,575	+		ABIE53_004820	0.21	+4.4
1,027,576	-		ABIE53_004820	0.21	+2.4
1,027,576	-		ABIE53_004820	0.21	+3.3
1,027,576	-		ABIE53_004820	0.21	+3.2
1,027,576	-		ABIE53_004820	0.21	+3.0
1,027,576	-		ABIE53_004820	0.21	+1.7
1,027,581	+		ABIE53_004820	0.21	+2.9
1,027,581	+		ABIE53_004820	0.21	+4.0
1,027,581	+		ABIE53_004820	0.21	+3.2
1,027,581	+		ABIE53_004820	0.21	+4.1
1,027,581	+		ABIE53_004820	0.21	+2.1
1,027,581	+		ABIE53_004820	0.21	+2.3
1,027,581	+		ABIE53_004820	0.21	+2.3
1,027,582	-		ABIE53_004820	0.21	+2.2
1,027,582	-		ABIE53_004820	0.21	+2.9
1,027,582	-		ABIE53_004820	0.21	+2.7
1,027,582	-		ABIE53_004820	0.21	+3.8
1,027,582	-		ABIE53_004820	0.21	+3.8
1,027,582	-		ABIE53_004820	0.21	+3.6
1,027,582	-		ABIE53_004820	0.21	+0.8
1,027,582	-		ABIE53_004820	0.21	+2.6
1,027,582	-		ABIE53_004820	0.21	+2.1
1,027,582	-		ABIE53_004820	0.21	+2.8
1,027,582	-		ABIE53_004820	0.21	+3.0
1,027,591	+		ABIE53_004820	0.23	+5.6
1,027,591	+		ABIE53_004820	0.23	+2.5
1,027,591	+		ABIE53_004820	0.23	+2.8
1,027,591	+		ABIE53_004820	0.23	+3.5
1,027,591	+		ABIE53_004820	0.23	+2.7
1,027,591	+		ABIE53_004820	0.23	+2.5
1,027,591	+		ABIE53_004820	0.23	+3.0
1,027,591	+		ABIE53_004820	0.23	+3.1
1,027,591	+		ABIE53_004820	0.23	+3.2
1,027,591	+		ABIE53_004820	0.23	+2.7
1,027,592	-		ABIE53_004820	0.23	+2.6
1,027,592	-		ABIE53_004820	0.23	+3.3
1,027,592	-		ABIE53_004820	0.23	+2.5
1,027,592	-		ABIE53_004820	0.23	+2.9
1,027,592	-		ABIE53_004820	0.23	+2.9
1,027,592	-		ABIE53_004820	0.23	+2.4
1,027,592	-		ABIE53_004820	0.23	+3.1
1,027,592	-		ABIE53_004820	0.23	+3.5
1,027,739	-		ABIE53_004820	0.41	+4.5
1,027,739	-		ABIE53_004820	0.41	-1.2
1,027,739	-		ABIE53_004820	0.41	+2.9
1,027,890	-		ABIE53_004820	0.59	+2.2
1,027,890	-		ABIE53_004820	0.59	+1.7
1,027,990	+		ABIE53_004820	0.72	+3.3
1,027,990	+		ABIE53_004820	0.72	+3.0
1,027,990	+		ABIE53_004820	0.72	+2.2
1,027,991	-		ABIE53_004820	0.72	+3.0
1,028,235	+				+0.4
1,028,236	-				+0.1
1,028,262	+				+0.9
1,028,262	+				+0.3
1,028,262	+				+0.3
1,028,262	+				+0.1
1,028,262	+				-0.4
1,028,262	+				-0.7
1,028,262	+				-0.0
1,028,262	+				-0.1
1,028,263	-				+1.9
1,028,263	-				-2.1
1,028,263	-				-2.7
1,028,263	-				-1.7
1,028,263	-				-0.1
1,028,263	-				-0.8
1,028,263	-				-0.4
1,028,263	-				-1.8
1,028,263	-				+0.5
1,028,263	-				-0.0
1,028,263	-				-0.1
1,028,263	-				-1.4
1,028,263	-				+2.6
1,028,263	-				-1.2
1,028,263	-				-0.8
1,028,314	+				+1.3
1,028,314	+				-0.5
1,028,314	+				+0.8
1,028,315	-				+0.3
1,028,315	-				+0.9
1,028,315	-				-2.1
1,028,315	-				+3.5
1,028,315	-				-0.3
1,028,316	+				-2.1
1,028,316	+				-0.1
1,028,316	+				-1.0
1,028,317	-				-1.1
1,028,317	-				-0.6
1,028,317	-				-0.7
1,028,317	-				-0.9
1,028,317	-				-0.2
1,028,317	-				+0.3
1,028,437	+				+0.9
1,028,438	-				-1.1
1,028,523	+		ABIE53_004821	0.13	+0.4
1,028,524	-		ABIE53_004821	0.13	+0.9
1,028,524	-		ABIE53_004821	0.13	+1.3
1,028,524	-		ABIE53_004821	0.13	-0.1
1,028,524	-		ABIE53_004821	0.13	-0.9
1,028,549	+		ABIE53_004821	0.15	+0.9
1,028,549	+		ABIE53_004821	0.15	+1.3
1,028,549	+		ABIE53_004821	0.15	-0.1
1,028,549	+		ABIE53_004821	0.15	-1.4
1,028,549	+		ABIE53_004821	0.15	-0.7
1,028,549	+		ABIE53_004821	0.15	-4.0
1,028,549	+		ABIE53_004821	0.15	+0.6
1,028,550	-		ABIE53_004821	0.15	-1.6
1,028,550	-		ABIE53_004821	0.15	+0.3
1,028,550	-		ABIE53_004821	0.15	-1.6
1,028,550	-		ABIE53_004821	0.15	-1.8
1,028,699	+		ABIE53_004821	0.26	+1.5
1,028,699	+		ABIE53_004821	0.26	+2.3
1,028,700	-		ABIE53_004821	0.26	-0.1
1,028,700	-		ABIE53_004821	0.26	+0.9
1,028,762	-		ABIE53_004821	0.31	-1.6
1,028,782	-		ABIE53_004821	0.32	-0.4
1,028,782	-		ABIE53_004821	0.32	+0.7
1,028,802	+		ABIE53_004821	0.34	-0.2
1,028,803	-		ABIE53_004821	0.34	-2.4
1,028,803	-		ABIE53_004821	0.34	-1.5
1,028,803	-		ABIE53_004821	0.34	-0.2
1,028,889	+		ABIE53_004821	0.40	-0.2
1,028,890	-		ABIE53_004821	0.40	-1.7
1,028,890	-		ABIE53_004821	0.40	-0.5
1,028,890	-		ABIE53_004821	0.40	-1.9
1,028,931	-		ABIE53_004821	0.43	-1.7
1,028,967	+		ABIE53_004821	0.46	-2.0
1,028,967	+		ABIE53_004821	0.46	-0.8
1,028,967	+		ABIE53_004821	0.46	-1.0
1,028,968	-		ABIE53_004821	0.46	-1.5
1,028,968	-		ABIE53_004821	0.46	+1.9
1,028,968	-		ABIE53_004821	0.46	-0.4
1,028,968	-		ABIE53_004821	0.46	-0.1
1,028,968	-		ABIE53_004821	0.46	-1.3
1,028,968	-		ABIE53_004821	0.46	+1.6
1,028,968	-		ABIE53_004821	0.46	+0.7
1,028,968	-		ABIE53_004821	0.46	-0.1