Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004634 and ABIE53_004635 are separated by 467 nucleotides ABIE53_004635 and ABIE53_004636 are separated by 132 nucleotides ABIE53_004636 and ABIE53_004637 are separated by 125 nucleotides
ABIE53_004634: ABIE53_004634 - chloramphenicol-sensitive protein RarD, at 816,486 to 817,376
_004634
ABIE53_004635: ABIE53_004635 - L-histidine N-alpha-methyltransferase, at 817,844 to 818,824
_004635
ABIE53_004636: ABIE53_004636 - acylphosphatase, at 818,957 to 819,250
_004636
ABIE53_004637: ABIE53_004637 - dihydroflavonol-4-reductase, at 819,376 to 820,386
_004637
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 816.874 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.048 kb on + strand, within ABIE53_004634 at 817.049 kb on - strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.060 kb on - strand, within ABIE53_004634 at 817.060 kb on - strand, within ABIE53_004634 at 817.175 kb on - strand, within ABIE53_004634 at 817.250 kb on + strand, within ABIE53_004634 at 817.250 kb on + strand, within ABIE53_004634 at 817.251 kb on - strand, within ABIE53_004634 at 817.277 kb on + strand, within ABIE53_004634 at 817.300 kb on + strand at 817.301 kb on - strand at 817.341 kb on + strand at 817.366 kb on + strand at 817.366 kb on + strand at 817.412 kb on + strand at 817.413 kb on - strand at 817.413 kb on - strand at 817.413 kb on - strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.457 kb on + strand at 817.457 kb on + strand at 817.457 kb on + strand at 817.457 kb on + strand at 817.457 kb on + strand at 817.457 kb on + strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.458 kb on - strand at 817.506 kb on + strand at 817.507 kb on - strand at 817.580 kb on + strand at 817.581 kb on - strand at 817.581 kb on - strand at 817.581 kb on - strand at 817.609 kb on + strand at 817.609 kb on + strand at 817.609 kb on + strand at 817.609 kb on + strand at 817.609 kb on + strand at 817.609 kb on + strand at 817.610 kb on - strand at 817.610 kb on - strand at 817.610 kb on - strand at 817.610 kb on - strand at 817.610 kb on - strand at 817.610 kb on - strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.616 kb on + strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.617 kb on - strand at 817.779 kb on + strand at 817.779 kb on + strand at 817.779 kb on + strand at 817.780 kb on - strand at 817.831 kb on + strand at 817.831 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.884 kb on + strand at 817.885 kb on - strand at 817.885 kb on - strand at 817.885 kb on - strand at 817.885 kb on - strand at 817.885 kb on - strand at 817.885 kb on - strand at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.955 kb on + strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.956 kb on - strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.962 kb on - strand, within ABIE53_004635 at 818.013 kb on - strand, within ABIE53_004635 at 818.013 kb on - strand, within ABIE53_004635 at 818.172 kb on - strand, within ABIE53_004635 at 818.172 kb on - strand, within ABIE53_004635 at 818.239 kb on + strand, within ABIE53_004635 at 818.239 kb on + strand, within ABIE53_004635 at 818.255 kb on + strand, within ABIE53_004635 at 818.255 kb on + strand, within ABIE53_004635 at 818.267 kb on + strand, within ABIE53_004635 at 818.267 kb on + strand, within ABIE53_004635 at 818.268 kb on - strand, within ABIE53_004635 at 818.268 kb on - strand, within ABIE53_004635 at 818.341 kb on + strand, within ABIE53_004635 at 818.342 kb on - strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.472 kb on - strand, within ABIE53_004635 at 818.472 kb on - strand, within ABIE53_004635 at 818.644 kb on + strand, within ABIE53_004635 at 818.645 kb on - strand, within ABIE53_004635 at 818.673 kb on + strand, within ABIE53_004635 at 818.673 kb on + strand, within ABIE53_004635 at 818.674 kb on - strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.840 kb on + strand at 818.840 kb on + strand at 818.853 kb on - strand at 818.901 kb on - strand at 818.901 kb on - strand at 818.951 kb on + strand at 818.951 kb on + strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.980 kb on - strand at 818.980 kb on - strand at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.216 kb on + strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.218 kb on - strand, within ABIE53_004636 at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.288 kb on - strand at 819.288 kb on - strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.592 kb on + strand, within ABIE53_004637 at 819.592 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Lumazine 5 mM remove 816,874 + ABIE53_004634 0.44 +3.5 817,006 + ABIE53_004634 0.58 -1.8 817,006 + ABIE53_004634 0.58 +0.3 817,006 + ABIE53_004634 0.58 -0.1 817,006 + ABIE53_004634 0.58 -0.9 817,006 + ABIE53_004634 0.58 -0.5 817,006 + ABIE53_004634 0.58 -1.5 817,006 + ABIE53_004634 0.58 +0.1 817,007 - ABIE53_004634 0.58 +0.5 817,007 - ABIE53_004634 0.58 -0.3 817,007 - ABIE53_004634 0.58 -0.5 817,007 - ABIE53_004634 0.58 -0.8 817,007 - ABIE53_004634 0.58 +0.3 817,048 + ABIE53_004634 0.63 +0.1 817,049 - ABIE53_004634 0.63 -0.2 817,059 + ABIE53_004634 0.64 -0.1 817,059 + ABIE53_004634 0.64 +1.9 817,059 + ABIE53_004634 0.64 -0.1 817,060 - ABIE53_004634 0.64 +0.6 817,060 - ABIE53_004634 0.64 -1.1 817,175 - ABIE53_004634 0.77 -0.3 817,250 + ABIE53_004634 0.86 -0.9 817,250 + ABIE53_004634 0.86 -0.0 817,251 - ABIE53_004634 0.86 -0.2 817,277 + ABIE53_004634 0.89 -0.8 817,300 + +1.9 817,301 - -1.1 817,341 + +2.9 817,366 + +1.9 817,366 + +0.3 817,412 + +0.3 817,413 - +0.0 817,413 - -0.5 817,413 - +0.8 817,414 + +0.5 817,414 + +1.8 817,414 + +0.2 817,414 + +1.1 817,414 + -2.4 817,414 + -0.3 817,414 + -1.5 817,414 + +0.6 817,414 + -2.8 817,414 + -0.3 817,415 - -1.0 817,415 - -0.2 817,415 - +0.1 817,415 - +0.2 817,415 - +0.3 817,415 - -1.4 817,415 - -0.3 817,415 - -0.1 817,415 - -1.4 817,457 + -1.5 817,457 + -0.2 817,457 + +0.3 817,457 + -0.7 817,457 + +0.3 817,457 + -0.5 817,458 - +1.9 817,458 - -1.3 817,458 - +0.1 817,458 - -1.2 817,458 - +0.3 817,458 - -0.7 817,458 - -0.1 817,506 + -1.4 817,507 - -1.1 817,580 + -0.1 817,581 - -0.9 817,581 - -1.4 817,581 - -0.1 817,609 + +0.5 817,609 + +0.9 817,609 + -0.4 817,609 + -0.0 817,609 + -0.1 817,609 + +1.4 817,610 - -0.4 817,610 - -1.1 817,610 - -0.3 817,610 - +0.7 817,610 - -0.3 817,610 - -1.1 817,616 + +0.5 817,616 + +0.3 817,616 + -0.7 817,616 + -0.2 817,616 + -0.4 817,616 + +0.5 817,616 + +0.0 817,617 - -0.4 817,617 - +0.2 817,617 - -1.0 817,617 - -0.4 817,617 - -0.4 817,617 - -1.3 817,617 - -1.0 817,617 - +2.6 817,617 - +0.0 817,779 + -1.0 817,779 + -1.1 817,779 + +0.1 817,780 - +1.5 817,831 + +0.3 817,831 + +0.8 817,884 + -0.2 817,884 + +3.5 817,884 + -0.6 817,884 + -1.7 817,884 + -0.1 817,884 + -0.5 817,884 + -1.9 817,885 - -0.6 817,885 - -0.8 817,885 - -1.1 817,885 - -0.5 817,885 - -0.1 817,885 - -1.8 817,955 + ABIE53_004635 0.11 -1.7 817,955 + ABIE53_004635 0.11 -0.8 817,955 + ABIE53_004635 0.11 -0.7 817,955 + ABIE53_004635 0.11 +0.1 817,955 + ABIE53_004635 0.11 +0.7 817,955 + ABIE53_004635 0.11 -2.3 817,955 + ABIE53_004635 0.11 +0.3 817,956 - ABIE53_004635 0.11 -2.0 817,956 - ABIE53_004635 0.11 -1.4 817,956 - ABIE53_004635 0.11 -0.9 817,956 - ABIE53_004635 0.11 -1.3 817,956 - ABIE53_004635 0.11 -1.2 817,956 - ABIE53_004635 0.11 -0.1 817,956 - ABIE53_004635 0.11 -0.9 817,956 - ABIE53_004635 0.11 -0.7 817,956 - ABIE53_004635 0.11 +1.9 817,956 - ABIE53_004635 0.11 +2.3 817,961 + ABIE53_004635 0.12 -2.0 817,961 + ABIE53_004635 0.12 -0.4 817,961 + ABIE53_004635 0.12 -2.0 817,961 + ABIE53_004635 0.12 -1.3 817,961 + ABIE53_004635 0.12 -1.9 817,961 + ABIE53_004635 0.12 -0.7 817,962 - ABIE53_004635 0.12 +4.7 818,013 - ABIE53_004635 0.17 +0.9 818,013 - ABIE53_004635 0.17 -1.7 818,172 - ABIE53_004635 0.33 -0.9 818,172 - ABIE53_004635 0.33 +0.1 818,239 + ABIE53_004635 0.40 -2.4 818,239 + ABIE53_004635 0.40 +1.1 818,255 + ABIE53_004635 0.42 -0.4 818,255 + ABIE53_004635 0.42 -1.3 818,267 + ABIE53_004635 0.43 +1.9 818,267 + ABIE53_004635 0.43 -0.9 818,268 - ABIE53_004635 0.43 -0.7 818,268 - ABIE53_004635 0.43 +0.9 818,341 + ABIE53_004635 0.51 +0.9 818,342 - ABIE53_004635 0.51 -1.5 818,471 + ABIE53_004635 0.64 +0.3 818,471 + ABIE53_004635 0.64 -1.7 818,471 + ABIE53_004635 0.64 -1.5 818,472 - ABIE53_004635 0.64 -1.3 818,472 - ABIE53_004635 0.64 -3.3 818,644 + ABIE53_004635 0.82 -1.8 818,645 - ABIE53_004635 0.82 -1.0 818,673 + ABIE53_004635 0.85 -0.7 818,673 + ABIE53_004635 0.85 +0.2 818,674 - ABIE53_004635 0.85 -0.4 818,714 + ABIE53_004635 0.89 -1.7 818,714 + ABIE53_004635 0.89 -1.3 818,714 + ABIE53_004635 0.89 -0.6 818,714 + ABIE53_004635 0.89 -0.9 818,714 + ABIE53_004635 0.89 -1.0 818,715 - ABIE53_004635 0.89 -3.2 818,715 - ABIE53_004635 0.89 -1.5 818,715 - ABIE53_004635 0.89 -0.5 818,840 + +0.3 818,840 + -0.1 818,853 - -1.4 818,901 - -2.9 818,901 - +1.2 818,951 + -0.4 818,951 + +1.5 818,952 - +1.2 818,952 - -0.2 818,952 - +0.4 818,952 - -0.1 818,979 + -1.6 818,979 + -2.2 818,979 + +0.1 818,979 + -0.4 818,979 + -0.4 818,980 - -1.1 818,980 - -1.5 819,213 + ABIE53_004636 0.87 -0.1 819,213 + ABIE53_004636 0.87 +2.9 819,213 + ABIE53_004636 0.87 -1.9 819,213 + ABIE53_004636 0.87 -0.5 819,213 + ABIE53_004636 0.87 +0.3 819,213 + ABIE53_004636 0.87 -0.9 819,214 - ABIE53_004636 0.87 -1.5 819,214 - ABIE53_004636 0.87 -1.1 819,214 - ABIE53_004636 0.87 -0.1 819,214 - ABIE53_004636 0.87 -0.5 819,214 - ABIE53_004636 0.87 -1.1 819,214 - ABIE53_004636 0.87 -2.3 819,214 - ABIE53_004636 0.87 +0.2 819,214 - ABIE53_004636 0.87 -1.9 819,214 - ABIE53_004636 0.87 -0.4 819,216 + ABIE53_004636 0.88 -1.8 819,217 - ABIE53_004636 0.88 -0.0 819,217 - ABIE53_004636 0.88 -0.7 819,217 - ABIE53_004636 0.88 -1.1 819,217 - ABIE53_004636 0.88 +0.7 819,217 - ABIE53_004636 0.88 +0.5 819,217 - ABIE53_004636 0.88 -0.1 819,217 - ABIE53_004636 0.88 -0.0 819,218 - ABIE53_004636 0.89 +3.9 819,287 + -1.5 819,287 + -0.7 819,287 + -0.2 819,287 + -2.2 819,288 - +0.5 819,288 - -1.1 819,338 + -0.8 819,338 + -2.0 819,338 + +2.2 819,338 + +1.9 819,338 + -0.9 819,338 + -0.5 819,338 + -0.3 819,338 + -0.7 819,338 + +0.4 819,339 - -2.1 819,339 - +2.1 819,339 - -0.0 819,339 - -0.4 819,339 - -0.1 819,339 - -0.4 819,339 - +0.3 819,339 - +2.7 819,339 - +0.8 819,339 - +1.1 819,339 - +1.1 819,339 - +0.5 819,592 + ABIE53_004637 0.21 +0.2 819,592 + ABIE53_004637 0.21 -0.7 819,721 + ABIE53_004637 0.34 -0.1 819,721 + ABIE53_004637 0.34 -1.7 819,721 + ABIE53_004637 0.34 +0.3 819,721 + ABIE53_004637 0.34 +0.2 819,721 + ABIE53_004637 0.34 -1.4 819,721 + ABIE53_004637 0.34 -1.2 819,721 + ABIE53_004637 0.34 -0.9 819,722 - ABIE53_004637 0.34 -0.1 819,722 - ABIE53_004637 0.34 -0.6 819,722 - ABIE53_004637 0.34 -0.1 819,814 + ABIE53_004637 0.43 +1.9 819,814 + ABIE53_004637 0.43 -2.0 819,814 + ABIE53_004637 0.43 +2.7 819,814 + ABIE53_004637 0.43 -0.4 819,815 - ABIE53_004637 0.43 +1.3 819,815 - ABIE53_004637 0.43 -0.9 819,815 - ABIE53_004637 0.43 +0.6 819,815 - ABIE53_004637 0.43 +1.6 819,815 - ABIE53_004637 0.43 -0.4 819,816 + ABIE53_004637 0.44 -0.7 819,816 + ABIE53_004637 0.44 +1.2 819,816 + ABIE53_004637 0.44 +1.3 819,817 - ABIE53_004637 0.44 -0.7 819,817 - ABIE53_004637 0.44 -1.2 819,817 - ABIE53_004637 0.44 +0.1 819,817 - ABIE53_004637 0.44 -2.2 819,817 - ABIE53_004637 0.44 -1.7 819,817 - ABIE53_004637 0.44 -2.7
Or see this region's nucleotide sequence