Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004167 and ABIE53_004168 are separated by 390 nucleotides ABIE53_004168 and ABIE53_004169 are separated by 172 nucleotides
ABIE53_004167: ABIE53_004167 - POT family proton-dependent oligopeptide transporter, at 340,224 to 341,765
_004167
ABIE53_004168: ABIE53_004168 - transcriptional regulator with XRE-family HTH domain, at 342,156 to 342,728
_004168
ABIE53_004169: ABIE53_004169 - oligopeptide transport system substrate-binding protein, at 342,901 to 344,529
_004169
Position (kb) 342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 341.195 kb on - strand, within ABIE53_004167 at 341.195 kb on - strand, within ABIE53_004167 at 341.304 kb on - strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.320 kb on + strand, within ABIE53_004167 at 341.320 kb on + strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.572 kb on + strand, within ABIE53_004167 at 341.671 kb on + strand at 341.770 kb on + strand at 341.771 kb on - strand at 341.771 kb on - strand at 341.787 kb on - strand at 341.912 kb on - strand at 341.942 kb on - strand at 342.014 kb on + strand at 342.015 kb on - strand at 342.015 kb on - strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.155 kb on + strand at 342.156 kb on - strand at 342.173 kb on + strand at 342.197 kb on - strand at 342.197 kb on - strand at 342.366 kb on + strand, within ABIE53_004168 at 342.366 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.643 kb on - strand, within ABIE53_004168 at 342.663 kb on - strand, within ABIE53_004168 at 342.841 kb on + strand at 343.310 kb on - strand, within ABIE53_004169 at 343.310 kb on - strand, within ABIE53_004169 at 343.402 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.550 kb on - strand, within ABIE53_004169 at 343.646 kb on - strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.685 kb on - strand, within ABIE53_004169 at 343.711 kb on + strand, within ABIE53_004169 at 343.712 kb on - strand, within ABIE53_004169
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Lumazine 5 mM remove 341,195 - ABIE53_004167 0.63 -2.2 341,195 - ABIE53_004167 0.63 +0.6 341,304 - ABIE53_004167 0.70 -0.7 341,317 + ABIE53_004167 0.71 -1.1 341,317 + ABIE53_004167 0.71 -0.2 341,317 + ABIE53_004167 0.71 +0.7 341,317 + ABIE53_004167 0.71 +1.2 341,317 + ABIE53_004167 0.71 +1.8 341,318 - ABIE53_004167 0.71 -0.5 341,318 - ABIE53_004167 0.71 -2.0 341,318 - ABIE53_004167 0.71 +0.8 341,320 + ABIE53_004167 0.71 +0.2 341,320 + ABIE53_004167 0.71 -1.5 341,321 - ABIE53_004167 0.71 -1.4 341,321 - ABIE53_004167 0.71 -1.2 341,321 - ABIE53_004167 0.71 -1.7 341,321 - ABIE53_004167 0.71 +0.5 341,362 + ABIE53_004167 0.74 -0.7 341,362 + ABIE53_004167 0.74 +0.8 341,362 + ABIE53_004167 0.74 -2.0 341,363 - ABIE53_004167 0.74 -1.1 341,363 - ABIE53_004167 0.74 -0.2 341,363 - ABIE53_004167 0.74 +0.3 341,363 - ABIE53_004167 0.74 +0.1 341,363 - ABIE53_004167 0.74 -1.7 341,363 - ABIE53_004167 0.74 -1.6 341,363 - ABIE53_004167 0.74 +0.3 341,437 + ABIE53_004167 0.79 -1.7 341,437 + ABIE53_004167 0.79 -1.1 341,437 + ABIE53_004167 0.79 +0.2 341,437 + ABIE53_004167 0.79 -2.2 341,438 - ABIE53_004167 0.79 +0.4 341,438 - ABIE53_004167 0.79 +0.5 341,438 - ABIE53_004167 0.79 +0.1 341,438 - ABIE53_004167 0.79 +1.8 341,438 - ABIE53_004167 0.79 -0.5 341,572 + ABIE53_004167 0.87 -1.5 341,671 + -0.2 341,770 + +2.2 341,771 - -0.3 341,771 - -0.4 341,787 - -2.2 341,912 - -1.0 341,942 - -0.2 342,014 + -4.5 342,015 - -3.2 342,015 - -1.6 342,029 + -1.9 342,029 + -0.5 342,029 + -3.0 342,030 - -0.7 342,030 - -2.5 342,030 - -2.9 342,030 - -0.2 342,030 - -3.6 342,155 + +0.3 342,156 - -3.3 342,173 + -1.7 342,197 - -1.0 342,197 - -3.8 342,366 + ABIE53_004168 0.37 +1.8 342,366 + ABIE53_004168 0.37 -1.2 342,563 + ABIE53_004168 0.71 +0.5 342,563 + ABIE53_004168 0.71 -4.0 342,567 + ABIE53_004168 0.72 -0.0 342,567 + ABIE53_004168 0.72 -2.8 342,567 + ABIE53_004168 0.72 -0.9 342,567 + ABIE53_004168 0.72 -0.0 342,568 - ABIE53_004168 0.72 -2.7 342,568 - ABIE53_004168 0.72 -2.5 342,643 - ABIE53_004168 0.85 -1.2 342,663 - ABIE53_004168 0.88 -1.7 342,841 + -0.4 343,310 - ABIE53_004169 0.25 -0.9 343,310 - ABIE53_004169 0.25 -0.5 343,402 + ABIE53_004169 0.31 +0.8 343,549 + ABIE53_004169 0.40 -1.0 343,549 + ABIE53_004169 0.40 -2.0 343,549 + ABIE53_004169 0.40 +1.8 343,549 + ABIE53_004169 0.40 -0.5 343,549 + ABIE53_004169 0.40 +0.7 343,549 + ABIE53_004169 0.40 +0.8 343,550 - ABIE53_004169 0.40 -0.2 343,646 - ABIE53_004169 0.46 +0.2 343,684 + ABIE53_004169 0.48 +0.8 343,684 + ABIE53_004169 0.48 +2.2 343,684 + ABIE53_004169 0.48 +1.8 343,685 - ABIE53_004169 0.48 -0.2 343,711 + ABIE53_004169 0.50 -0.7 343,712 - ABIE53_004169 0.50 +0.5
Or see this region's nucleotide sequence