Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003950 and ABIE53_003951 are separated by 64 nucleotides ABIE53_003951 and ABIE53_003952 are separated by 10 nucleotides ABIE53_003952 and ABIE53_003953 are separated by 45 nucleotides
ABIE53_003950: ABIE53_003950 - FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family), at 99,177 to 100,532
_003950
ABIE53_003951: ABIE53_003951 - dipeptide transport system substrate-binding protein, at 100,597 to 102,255
_003951
ABIE53_003952: ABIE53_003952 - polar amino acid transport system substrate-binding protein, at 102,266 to 103,174
_003952
ABIE53_003953: ABIE53_003953 - polar amino acid transport system permease protein, at 103,220 to 105,037
_003953
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.627 kb on + strand, within ABIE53_003950 at 99.674 kb on + strand, within ABIE53_003950 at 99.765 kb on + strand, within ABIE53_003950 at 99.765 kb on + strand, within ABIE53_003950 at 99.766 kb on - strand, within ABIE53_003950 at 100.071 kb on + strand, within ABIE53_003950 at 100.071 kb on + strand, within ABIE53_003950 at 100.072 kb on - strand, within ABIE53_003950 at 100.074 kb on - strand, within ABIE53_003950 at 100.096 kb on + strand, within ABIE53_003950 at 100.224 kb on + strand, within ABIE53_003950 at 100.224 kb on + strand, within ABIE53_003950 at 100.224 kb on + strand, within ABIE53_003950 at 100.454 kb on + strand at 100.454 kb on + strand at 100.455 kb on - strand at 100.530 kb on + strand at 100.531 kb on - strand at 100.589 kb on - strand at 100.704 kb on + strand at 100.705 kb on - strand at 100.705 kb on - strand at 100.705 kb on - strand at 100.706 kb on + strand at 100.706 kb on + strand at 100.707 kb on - strand at 100.745 kb on + strand at 100.746 kb on - strand at 100.746 kb on - strand at 100.834 kb on - strand, within ABIE53_003951 at 100.834 kb on - strand, within ABIE53_003951 at 100.910 kb on + strand, within ABIE53_003951 at 100.910 kb on + strand, within ABIE53_003951 at 100.910 kb on + strand, within ABIE53_003951 at 100.910 kb on + strand, within ABIE53_003951 at 100.954 kb on - strand, within ABIE53_003951 at 100.954 kb on - strand, within ABIE53_003951 at 100.955 kb on + strand, within ABIE53_003951 at 100.956 kb on - strand, within ABIE53_003951 at 100.956 kb on - strand, within ABIE53_003951 at 100.970 kb on + strand, within ABIE53_003951 at 101.078 kb on - strand, within ABIE53_003951 at 101.315 kb on + strand, within ABIE53_003951 at 101.639 kb on + strand, within ABIE53_003951 at 101.801 kb on + strand, within ABIE53_003951 at 101.801 kb on + strand, within ABIE53_003951 at 101.902 kb on - strand, within ABIE53_003951 at 101.936 kb on + strand, within ABIE53_003951 at 101.937 kb on - strand, within ABIE53_003951 at 101.937 kb on - strand, within ABIE53_003951 at 102.588 kb on + strand, within ABIE53_003952 at 102.744 kb on + strand, within ABIE53_003952 at 102.744 kb on + strand, within ABIE53_003952 at 102.745 kb on - strand, within ABIE53_003952 at 103.079 kb on - strand, within ABIE53_003952 at 103.082 kb on + strand, within ABIE53_003952 at 103.082 kb on + strand, within ABIE53_003952 at 103.083 kb on - strand, within ABIE53_003952 at 103.083 kb on - strand, within ABIE53_003952 at 103.083 kb on - strand, within ABIE53_003952 at 103.083 kb on - strand, within ABIE53_003952
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Lumazine 5 mM remove 99,627 + ABIE53_003950 0.33 +0.8 99,674 + ABIE53_003950 0.37 -0.5 99,765 + ABIE53_003950 0.43 +0.5 99,765 + ABIE53_003950 0.43 -1.3 99,766 - ABIE53_003950 0.43 -2.5 100,071 + ABIE53_003950 0.66 -0.7 100,071 + ABIE53_003950 0.66 +1.8 100,072 - ABIE53_003950 0.66 -0.9 100,074 - ABIE53_003950 0.66 -0.0 100,096 + ABIE53_003950 0.68 +1.7 100,224 + ABIE53_003950 0.77 -0.6 100,224 + ABIE53_003950 0.77 -1.1 100,224 + ABIE53_003950 0.77 +1.0 100,454 + +1.8 100,454 + +0.1 100,455 - +1.4 100,530 + -1.5 100,531 - +0.2 100,589 - -0.5 100,704 + +1.0 100,705 - -0.8 100,705 - -0.4 100,705 - +1.4 100,706 + +0.2 100,706 + -0.8 100,707 - +1.3 100,745 + +1.3 100,746 - -0.5 100,746 - -1.9 100,834 - ABIE53_003951 0.14 +0.2 100,834 - ABIE53_003951 0.14 -0.2 100,910 + ABIE53_003951 0.19 -0.5 100,910 + ABIE53_003951 0.19 -0.7 100,910 + ABIE53_003951 0.19 -1.0 100,910 + ABIE53_003951 0.19 -1.3 100,954 - ABIE53_003951 0.22 -1.2 100,954 - ABIE53_003951 0.22 -0.5 100,955 + ABIE53_003951 0.22 -0.8 100,956 - ABIE53_003951 0.22 -1.2 100,956 - ABIE53_003951 0.22 -2.6 100,970 + ABIE53_003951 0.22 +0.2 101,078 - ABIE53_003951 0.29 -1.6 101,315 + ABIE53_003951 0.43 -2.6 101,639 + ABIE53_003951 0.63 -0.5 101,801 + ABIE53_003951 0.73 -1.9 101,801 + ABIE53_003951 0.73 +0.2 101,902 - ABIE53_003951 0.79 -0.6 101,936 + ABIE53_003951 0.81 -0.2 101,937 - ABIE53_003951 0.81 +1.5 101,937 - ABIE53_003951 0.81 +2.4 102,588 + ABIE53_003952 0.35 -2.1 102,744 + ABIE53_003952 0.53 -0.5 102,744 + ABIE53_003952 0.53 +0.4 102,745 - ABIE53_003952 0.53 +0.0 103,079 - ABIE53_003952 0.89 -1.3 103,082 + ABIE53_003952 0.90 +0.8 103,082 + ABIE53_003952 0.90 -1.8 103,083 - ABIE53_003952 0.90 +0.2 103,083 - ABIE53_003952 0.90 -0.9 103,083 - ABIE53_003952 0.90 -0.1 103,083 - ABIE53_003952 0.90 +1.1
Or see this region's nucleotide sequence