Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001009

Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Lumazine 5 mM
1,105,657	+		ABIE53_001008	0.51	+0.8
1,105,657	+		ABIE53_001008	0.51	+0.1
1,105,657	+		ABIE53_001008	0.51	+0.4
1,105,658	-		ABIE53_001008	0.51	-0.2
1,105,658	-		ABIE53_001008	0.51	+0.8
1,105,658	-		ABIE53_001008	0.51	-0.1
1,105,687	+		ABIE53_001008	0.53	-0.9
1,105,687	+		ABIE53_001008	0.53	+1.4
1,105,687	+		ABIE53_001008	0.53	-0.6
1,105,789	+		ABIE53_001008	0.59	+0.4
1,105,790	-		ABIE53_001008	0.59	-0.6
1,105,801	+		ABIE53_001008	0.59	-0.4
1,105,801	+		ABIE53_001008	0.59	+0.6
1,105,802	-		ABIE53_001008	0.59	+1.4
1,105,802	-		ABIE53_001008	0.59	+1.4
1,105,802	-		ABIE53_001008	0.59	+0.4
1,105,826	+		ABIE53_001008	0.61	-1.9
1,105,826	+		ABIE53_001008	0.61	+0.8
1,105,827	-		ABIE53_001008	0.61	+1.0
1,106,068	+		ABIE53_001008	0.75	+0.7
1,106,068	+		ABIE53_001008	0.75	-0.3
1,106,068	+		ABIE53_001008	0.75	-0.6
1,106,068	+		ABIE53_001008	0.75	+0.4
1,106,068	+		ABIE53_001008	0.75	-1.4
1,106,068	+		ABIE53_001008	0.75	-0.6
1,106,068	+		ABIE53_001008	0.75	-2.2
1,106,224	-		ABIE53_001008	0.84	-1.6
1,106,449	-				-1.3
1,106,585	+				-0.5
1,106,586	-				-0.3
1,106,960	+				+1.2
1,106,961	-				+0.2
1,107,421	-		ABIE53_001009	0.14	-2.4
1,107,453	+		ABIE53_001009	0.15	+0.9
1,107,453	+		ABIE53_001009	0.15	+1.5
1,107,454	-		ABIE53_001009	0.15	-3.4
1,107,579	+		ABIE53_001009	0.17	+0.2
1,107,579	+		ABIE53_001009	0.17	-0.4
1,107,618	+		ABIE53_001009	0.17	+1.9
1,107,618	+		ABIE53_001009	0.17	+0.9
1,107,618	+		ABIE53_001009	0.17	-0.6
1,107,619	-		ABIE53_001009	0.17	-0.2
1,107,750	+		ABIE53_001009	0.20	-1.0
1,107,817	+		ABIE53_001009	0.21	+0.5
1,107,828	+		ABIE53_001009	0.21	-1.6
1,107,828	+		ABIE53_001009	0.21	+1.6
1,107,829	-		ABIE53_001009	0.21	-0.4
1,107,829	-		ABIE53_001009	0.21	-0.9
1,107,829	-		ABIE53_001009	0.21	-0.1
1,107,895	+		ABIE53_001009	0.22	-0.9
1,107,895	+		ABIE53_001009	0.22	-0.2
1,107,924	+		ABIE53_001009	0.22	+0.6
1,107,924	+		ABIE53_001009	0.22	+0.8
1,107,925	-		ABIE53_001009	0.22	+1.9
1,107,925	-		ABIE53_001009	0.22	+3.2
1,107,925	-		ABIE53_001009	0.22	-1.6
1,108,005	+		ABIE53_001009	0.24	+0.1
1,108,026	+		ABIE53_001009	0.24	+0.4
1,108,026	+		ABIE53_001009	0.24	+0.4
1,108,027	-		ABIE53_001009	0.24	-0.5
1,108,030	-		ABIE53_001009	0.24	+0.6
1,108,147	-		ABIE53_001009	0.26	-0.6
1,108,177	-		ABIE53_001009	0.27	-0.8
1,108,185	+		ABIE53_001009	0.27	-0.1
1,108,186	-		ABIE53_001009	0.27	-0.5
1,108,193	+		ABIE53_001009	0.27	-1.1
1,108,316	+		ABIE53_001009	0.29	-0.2
1,108,317	-		ABIE53_001009	0.29	+0.4
1,108,408	-		ABIE53_001009	0.30	-1.1
1,108,408	-		ABIE53_001009	0.30	-1.3
1,108,408	-		ABIE53_001009	0.30	+0.2
1,108,435	-		ABIE53_001009	0.31	-0.9
1,108,483	+		ABIE53_001009	0.32	-1.4
1,108,483	+		ABIE53_001009	0.32	+0.3
1,108,484	-		ABIE53_001009	0.32	+0.2
1,108,484	-		ABIE53_001009	0.32	+0.7
1,108,484	-		ABIE53_001009	0.32	+0.9
1,108,484	-		ABIE53_001009	0.32	+2.7
1,108,484	-		ABIE53_001009	0.32	+0.6
1,108,493	-		ABIE53_001009	0.32	-1.1
1,108,498	+		ABIE53_001009	0.32	-1.3
1,108,578	+		ABIE53_001009	0.33	-0.2
1,108,578	+		ABIE53_001009	0.33	-0.9
1,108,582	+		ABIE53_001009	0.33	-3.3
1,108,582	+		ABIE53_001009	0.33	-0.9
1,108,583	-		ABIE53_001009	0.33	-1.6
1,108,583	-		ABIE53_001009	0.33	-0.4
1,108,650	+		ABIE53_001009	0.34	+1.9
1,108,650	+		ABIE53_001009	0.34	-0.8
1,108,650	+		ABIE53_001009	0.34	+3.5
1,108,659	+		ABIE53_001009	0.34	+1.4
1,108,660	-		ABIE53_001009	0.34	-0.4
1,108,660	-		ABIE53_001009	0.34	-0.4
1,108,758	+		ABIE53_001009	0.36	-0.6
1,108,758	+		ABIE53_001009	0.36	-1.4
1,108,759	-		ABIE53_001009	0.36	-0.6
1,108,779	+		ABIE53_001009	0.36	-1.5
1,108,780	-		ABIE53_001009	0.36	+1.6
1,109,128	+		ABIE53_001009	0.42	+0.9
1,109,129	-		ABIE53_001009	0.42	-2.9
1,109,129	-		ABIE53_001009	0.42	-1.4
1,109,145	+		ABIE53_001009	0.42	+0.9
1,109,185	-		ABIE53_001009	0.43	+0.7
1,109,211	+		ABIE53_001009	0.43	-0.4
1,109,211	+		ABIE53_001009	0.43	+1.9
1,109,212	-		ABIE53_001009	0.43	+1.2
1,109,212	-		ABIE53_001009	0.43	-3.5
1,109,549	+		ABIE53_001009	0.49	-0.4
1,109,575	+		ABIE53_001009	0.49	+0.4
1,109,632	+		ABIE53_001009	0.50	-0.6
1,109,632	+		ABIE53_001009	0.50	-0.4
1,109,633	-		ABIE53_001009	0.50	-0.9
1,109,633	-		ABIE53_001009	0.50	+1.4
1,109,633	-		ABIE53_001009	0.50	-1.8
1,109,644	+		ABIE53_001009	0.51	-1.4
1,109,645	-		ABIE53_001009	0.51	-0.8
1,109,645	-		ABIE53_001009	0.51	-1.2
1,109,645	-		ABIE53_001009	0.51	+0.5
1,109,646	+		ABIE53_001009	0.51	-2.8
1,109,646	+		ABIE53_001009	0.51	-1.1
1,109,665	+		ABIE53_001009	0.51	-0.1
1,109,665	+		ABIE53_001009	0.51	-0.9
1,109,665	+		ABIE53_001009	0.51	+0.5
1,109,666	-		ABIE53_001009	0.51	+0.7
1,109,666	-		ABIE53_001009	0.51	+1.9
1,109,818	+		ABIE53_001009	0.53	-0.8
1,109,824	+		ABIE53_001009	0.53	+0.8
1,109,824	+		ABIE53_001009	0.53	+1.2
1,109,825	-		ABIE53_001009	0.53	+0.5
1,109,825	-		ABIE53_001009	0.53	+0.2
1,109,825	-		ABIE53_001009	0.53	+0.4
1,109,825	-		ABIE53_001009	0.53	-0.9
1,109,850	+		ABIE53_001009	0.54	-0.8
1,109,878	+		ABIE53_001009	0.54	+1.3
1,109,878	+		ABIE53_001009	0.54	+0.9
1,109,878	+		ABIE53_001009	0.54	+0.7
1,109,878	+		ABIE53_001009	0.54	+1.2
1,109,878	+		ABIE53_001009	0.54	-0.6
1,109,879	-		ABIE53_001009	0.54	-1.4
1,109,935	-		ABIE53_001009	0.55	+0.1
1,109,955	+		ABIE53_001009	0.56	+0.4
1,109,955	+		ABIE53_001009	0.56	-1.1
1,110,166	+		ABIE53_001009	0.59	-1.1
1,110,166	+		ABIE53_001009	0.59	+0.4
1,110,166	+		ABIE53_001009	0.59	-0.4
1,110,167	-		ABIE53_001009	0.59	+2.6
1,110,167	-		ABIE53_001009	0.59	-1.0
1,110,167	-		ABIE53_001009	0.59	+0.4
1,110,241	-		ABIE53_001009	0.60	+0.1
1,110,262	+		ABIE53_001009	0.61	-0.1
1,110,299	+		ABIE53_001009	0.61	+0.0
1,110,300	-		ABIE53_001009	0.61	-1.2
1,110,300	-		ABIE53_001009	0.61	-0.1
1,110,424	+		ABIE53_001009	0.63	-1.5
1,110,424	+		ABIE53_001009	0.63	-0.3
1,110,424	+		ABIE53_001009	0.63	-1.7
1,110,424	+		ABIE53_001009	0.63	-0.7
1,110,424	+		ABIE53_001009	0.63	+0.7
1,110,425	-		ABIE53_001009	0.63	-1.0
1,110,425	-		ABIE53_001009	0.63	+0.9
1,110,425	-		ABIE53_001009	0.63	+1.7
1,110,425	-		ABIE53_001009	0.63	+0.1
1,110,425	-		ABIE53_001009	0.63	-0.8
1,110,425	-		ABIE53_001009	0.63	+0.9
1,110,425	-		ABIE53_001009	0.63	-1.5
1,110,428	+		ABIE53_001009	0.63	-1.6
1,110,428	+		ABIE53_001009	0.63	+0.1
1,110,428	+		ABIE53_001009	0.63	+0.5
1,110,428	+		ABIE53_001009	0.63	+0.8
1,110,429	-		ABIE53_001009	0.63	-1.5
1,110,429	-		ABIE53_001009	0.63	-1.1
1,110,429	-		ABIE53_001009	0.63	+0.4
1,110,429	-		ABIE53_001009	0.63	-1.1
1,110,429	-		ABIE53_001009	0.63	-0.6
1,110,523	+		ABIE53_001009	0.65	+1.1
1,110,524	-		ABIE53_001009	0.65	+0.8
1,110,612	+		ABIE53_001009	0.66	+0.9
1,110,700	+		ABIE53_001009	0.68	-1.0
1,110,700	+		ABIE53_001009	0.68	+0.8
1,110,701	-		ABIE53_001009	0.68	-0.9
1,110,782	-		ABIE53_001009	0.69	-0.2
1,110,835	-		ABIE53_001009	0.70	-1.3
1,110,894	+		ABIE53_001009	0.71	-0.6
1,110,952	+		ABIE53_001009	0.72	-0.5
1,110,952	+		ABIE53_001009	0.72	+0.9
1,110,952	+		ABIE53_001009	0.72	-0.4
1,110,953	-		ABIE53_001009	0.72	-0.1
1,111,065	+		ABIE53_001009	0.74	+0.2
1,111,065	+		ABIE53_001009	0.74	-1.0
1,111,071	-		ABIE53_001009	0.74	-0.4
1,111,071	-		ABIE53_001009	0.74	-1.1
1,111,207	+		ABIE53_001009	0.76	+1.1
1,111,208	-		ABIE53_001009	0.76	-0.9
1,111,245	+		ABIE53_001009	0.77	-0.1
1,111,246	-		ABIE53_001009	0.77	-0.6
1,111,246	-		ABIE53_001009	0.77	+1.4
1,111,246	-		ABIE53_001009	0.77	-1.3
1,111,294	+		ABIE53_001009	0.77	-1.6
1,111,295	-		ABIE53_001009	0.77	-2.0
1,111,305	+		ABIE53_001009	0.78	-0.8
1,111,305	+		ABIE53_001009	0.78	-0.2
1,111,305	+		ABIE53_001009	0.78	-0.3
1,111,306	-		ABIE53_001009	0.78	-1.3
1,111,383	+		ABIE53_001009	0.79	-1.4
1,111,383	+		ABIE53_001009	0.79	+0.1
1,111,383	+		ABIE53_001009	0.79	+0.5
1,111,384	-		ABIE53_001009	0.79	+0.0
1,111,465	+		ABIE53_001009	0.80	-0.8
1,111,552	+		ABIE53_001009	0.82	-0.1
1,111,553	-		ABIE53_001009	0.82	+2.2
1,111,553	-		ABIE53_001009	0.82	-1.3
1,111,566	+		ABIE53_001009	0.82	+1.9
1,111,566	+		ABIE53_001009	0.82	+0.1
1,111,723	+		ABIE53_001009	0.84	-0.4
1,111,723	+		ABIE53_001009	0.84	-0.1
1,111,724	-		ABIE53_001009	0.84	-0.9
1,111,811	-		ABIE53_001009	0.86	+0.9
1,111,981	+		ABIE53_001009	0.89	-0.2
1,111,981	+		ABIE53_001009	0.89	-0.9
1,111,981	+		ABIE53_001009	0.89	+0.1
1,111,981	+		ABIE53_001009	0.89	-0.4
1,111,981	+		ABIE53_001009	0.89	+0.1
1,111,982	-		ABIE53_001009	0.89	+0.2
1,111,982	-		ABIE53_001009	0.89	+1.9
1,111,982	-		ABIE53_001009	0.89	-1.0
1,111,982	-		ABIE53_001009	0.89	-0.1
1,112,032	+		ABIE53_001009	0.90	-0.1
1,112,033	-		ABIE53_001009	0.90	-0.8
1,112,033	-		ABIE53_001009	0.90	+1.9
1,112,033	-		ABIE53_001009	0.90	-1.1
1,112,236	-				-0.7
1,112,515	-				-1.0
1,112,572	+				+0.4
1,112,680	-		ABIE53_001010	0.23	+1.5
1,112,680	-		ABIE53_001010	0.23	+1.4
1,112,756	-		ABIE53_001010	0.39	+2.2
1,112,756	-		ABIE53_001010	0.39	-0.6
1,112,891	-		ABIE53_001010	0.67	-0.7
1,113,039	+				-1.1
1,113,039	+				+0.7
1,113,040	-				-1.4
1,113,063	+				-2.1
1,113,063	+				+2.5
1,113,064	-				-1.1
1,113,064	-				+0.4
1,113,106	+				+1.2
1,113,106	+				-1.9
1,113,106	+				-0.5
1,113,125	-				-0.4
1,113,253	+				+0.4
1,113,258	-				+0.6
1,113,430	-				-0.4
1,113,617	-				+2.0