Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000774 and ABIE53_000775 are separated by 39 nucleotides ABIE53_000775 and ABIE53_000776 are separated by 221 nucleotides ABIE53_000776 and ABIE53_000777 are separated by 72 nucleotides ABIE53_000777 and ABIE53_000778 are separated by 76 nucleotides
ABIE53_000774: ABIE53_000774 - ubiquinone biosynthesis protein, at 835,843 to 837,420
_000774
ABIE53_000775: ABIE53_000775 - hypothetical protein, at 837,460 to 838,095
_000775
ABIE53_000776: ABIE53_000776 - putative FmdB family regulatory protein, at 838,317 to 838,703
_000776
ABIE53_000777: ABIE53_000777 - putative membrane protein, at 838,776 to 839,429
_000777
ABIE53_000778: ABIE53_000778 - aspartyl-tRNA synthetase, at 839,506 to 841,305
_000778
Position (kb) 838
839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 837.409 kb on + strand at 837.410 kb on - strand at 837.434 kb on + strand at 837.434 kb on + strand at 837.435 kb on - strand at 837.435 kb on - strand at 837.435 kb on - strand at 837.661 kb on + strand, within ABIE53_000775 at 837.661 kb on + strand, within ABIE53_000775 at 837.661 kb on + strand, within ABIE53_000775 at 837.661 kb on + strand, within ABIE53_000775 at 837.796 kb on + strand, within ABIE53_000775 at 837.796 kb on + strand, within ABIE53_000775 at 837.796 kb on + strand, within ABIE53_000775 at 837.796 kb on + strand, within ABIE53_000775 at 837.796 kb on + strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.797 kb on - strand, within ABIE53_000775 at 837.826 kb on + strand, within ABIE53_000775 at 837.826 kb on + strand, within ABIE53_000775 at 837.826 kb on + strand, within ABIE53_000775 at 837.826 kb on + strand, within ABIE53_000775 at 837.826 kb on + strand, within ABIE53_000775 at 837.827 kb on - strand, within ABIE53_000775 at 837.827 kb on - strand, within ABIE53_000775 at 837.827 kb on - strand, within ABIE53_000775 at 837.827 kb on - strand, within ABIE53_000775 at 837.827 kb on - strand, within ABIE53_000775 at 837.874 kb on + strand, within ABIE53_000775 at 837.874 kb on + strand, within ABIE53_000775 at 837.874 kb on + strand, within ABIE53_000775 at 837.875 kb on - strand, within ABIE53_000775 at 837.875 kb on - strand, within ABIE53_000775 at 837.934 kb on - strand, within ABIE53_000775 at 837.934 kb on - strand, within ABIE53_000775 at 838.153 kb on + strand at 838.153 kb on + strand at 838.153 kb on + strand at 838.153 kb on + strand at 838.266 kb on + strand at 838.268 kb on + strand at 838.268 kb on + strand at 838.268 kb on + strand at 838.268 kb on + strand at 838.268 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.326 kb on + strand at 838.332 kb on + strand at 838.476 kb on + strand, within ABIE53_000776 at 838.476 kb on + strand, within ABIE53_000776 at 838.476 kb on + strand, within ABIE53_000776 at 838.476 kb on + strand, within ABIE53_000776 at 838.701 kb on + strand at 838.701 kb on + strand at 838.704 kb on + strand at 838.704 kb on + strand at 838.704 kb on + strand at 838.704 kb on + strand at 838.704 kb on + strand at 838.771 kb on + strand at 838.771 kb on + strand at 838.771 kb on + strand at 839.079 kb on + strand, within ABIE53_000777 at 839.079 kb on + strand, within ABIE53_000777 at 839.175 kb on + strand, within ABIE53_000777 at 839.175 kb on + strand, within ABIE53_000777 at 839.175 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.177 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.250 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.349 kb on + strand, within ABIE53_000777 at 839.427 kb on + strand at 839.427 kb on + strand at 839.427 kb on + strand at 839.427 kb on + strand at 839.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Lumazine 5 mM remove 837,409 + +0.2 837,410 - +0.8 837,434 + -1.1 837,434 + -0.6 837,435 - +0.2 837,435 - -0.5 837,435 - -0.2 837,661 + ABIE53_000775 0.32 +0.7 837,661 + ABIE53_000775 0.32 -0.3 837,661 + ABIE53_000775 0.32 -0.2 837,661 + ABIE53_000775 0.32 +0.6 837,796 + ABIE53_000775 0.53 -0.2 837,796 + ABIE53_000775 0.53 -0.7 837,796 + ABIE53_000775 0.53 +0.6 837,796 + ABIE53_000775 0.53 -0.9 837,796 + ABIE53_000775 0.53 +2.0 837,797 - ABIE53_000775 0.53 +3.2 837,797 - ABIE53_000775 0.53 -0.7 837,797 - ABIE53_000775 0.53 +0.0 837,797 - ABIE53_000775 0.53 -0.2 837,797 - ABIE53_000775 0.53 +0.7 837,797 - ABIE53_000775 0.53 -0.5 837,826 + ABIE53_000775 0.58 +0.8 837,826 + ABIE53_000775 0.58 -2.1 837,826 + ABIE53_000775 0.58 -0.8 837,826 + ABIE53_000775 0.58 +1.1 837,826 + ABIE53_000775 0.58 -0.0 837,827 - ABIE53_000775 0.58 -0.4 837,827 - ABIE53_000775 0.58 -0.4 837,827 - ABIE53_000775 0.58 -2.5 837,827 - ABIE53_000775 0.58 +0.8 837,827 - ABIE53_000775 0.58 +0.1 837,874 + ABIE53_000775 0.65 -2.1 837,874 + ABIE53_000775 0.65 -2.2 837,874 + ABIE53_000775 0.65 +0.0 837,875 - ABIE53_000775 0.65 -1.8 837,875 - ABIE53_000775 0.65 -1.2 837,934 - ABIE53_000775 0.75 +2.0 837,934 - ABIE53_000775 0.75 -0.5 838,153 + -1.5 838,153 + +0.4 838,153 + -2.1 838,153 + +0.0 838,266 + -3.8 838,268 + -0.3 838,268 + -0.3 838,268 + +0.1 838,268 + -1.2 838,268 + -0.8 838,326 + +1.0 838,326 + +0.6 838,326 + +0.7 838,326 + -1.2 838,326 + -1.4 838,326 + -1.4 838,326 + -3.6 838,326 + +1.0 838,326 + -1.1 838,326 + -0.6 838,326 + -0.3 838,326 + +0.9 838,332 + -0.7 838,476 + ABIE53_000776 0.41 +2.2 838,476 + ABIE53_000776 0.41 -1.5 838,476 + ABIE53_000776 0.41 -0.4 838,476 + ABIE53_000776 0.41 -1.0 838,701 + -1.5 838,701 + -2.9 838,704 + -2.8 838,704 + -1.7 838,704 + -2.4 838,704 + -2.1 838,704 + -0.8 838,771 + +0.6 838,771 + -0.6 838,771 + +0.8 839,079 + ABIE53_000777 0.46 -2.3 839,079 + ABIE53_000777 0.46 +0.7 839,175 + ABIE53_000777 0.61 +1.0 839,175 + ABIE53_000777 0.61 -1.3 839,175 + ABIE53_000777 0.61 -0.3 839,177 + ABIE53_000777 0.61 -3.9 839,177 + ABIE53_000777 0.61 -0.3 839,177 + ABIE53_000777 0.61 -3.0 839,177 + ABIE53_000777 0.61 -2.4 839,177 + ABIE53_000777 0.61 -1.4 839,177 + ABIE53_000777 0.61 -0.3 839,177 + ABIE53_000777 0.61 -1.6 839,177 + ABIE53_000777 0.61 -1.7 839,250 + ABIE53_000777 0.72 -0.8 839,250 + ABIE53_000777 0.72 -1.0 839,250 + ABIE53_000777 0.72 -1.8 839,250 + ABIE53_000777 0.72 -1.0 839,250 + ABIE53_000777 0.72 -1.8 839,250 + ABIE53_000777 0.72 -1.3 839,349 + ABIE53_000777 0.88 -0.3 839,349 + ABIE53_000777 0.88 +2.0 839,349 + ABIE53_000777 0.88 -0.5 839,349 + ABIE53_000777 0.88 -1.9 839,349 + ABIE53_000777 0.88 -1.2 839,349 + ABIE53_000777 0.88 +1.0 839,349 + ABIE53_000777 0.88 -1.3 839,349 + ABIE53_000777 0.88 -2.0 839,349 + ABIE53_000777 0.88 -1.7 839,349 + ABIE53_000777 0.88 -2.0 839,349 + ABIE53_000777 0.88 -1.5 839,349 + ABIE53_000777 0.88 -1.5 839,427 + +2.0 839,427 + -2.0 839,427 + +0.4 839,427 + -2.9 839,427 + -0.4
Or see this region's nucleotide sequence