Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3374

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
4,349,359	+		BT3372	0.49	-1.2
4,349,387	+		BT3372	0.52	-3.6
4,349,396	-		BT3372	0.53	-1.4
4,349,454	+		BT3372	0.59	-0.7
4,349,455	-		BT3372	0.59	-0.4
4,349,472	+		BT3372	0.61	-0.7
4,349,474	+		BT3372	0.61	-2.7
4,349,475	-		BT3372	0.61	-1.7
4,349,529	-		BT3372	0.66	-2.1
4,349,561	+		BT3372	0.70	-1.2
4,349,612	-		BT3372	0.75	-0.6
4,349,649	-		BT3372	0.79	-0.4
4,349,658	-		BT3372	0.80	-0.4
4,349,792	-				-2.4
4,349,792	-				-1.5
4,349,794	-				+0.3
4,349,794	-				-0.6
4,349,808	+				+0.1
4,349,809	-				-0.2
4,349,828	+				+0.1
4,349,892	-				-1.7
4,349,895	+				-2.4
4,349,936	-		BT3373	0.16	+0.6
4,349,972	-		BT3373	0.24	-2.2
4,350,015	-		BT3373	0.34	-0.7
4,350,015	-		BT3373	0.34	-1.8
4,350,022	-		BT3373	0.36	+0.2
4,350,022	-		BT3373	0.36	-1.5
4,350,078	+		BT3373	0.48	-2.7
4,350,078	+		BT3373	0.48	-1.8
4,350,086	-		BT3373	0.50	-1.4
4,350,089	+		BT3373	0.51	-1.8
4,350,089	+		BT3373	0.51	-2.1
4,350,152	-		BT3373	0.65	-3.2
4,350,152	-		BT3373	0.65	-0.2
4,350,157	-		BT3373	0.66	-0.7
4,350,160	-		BT3373	0.67	+1.1
4,350,274	-				-1.4
4,350,274	-				-2.5
4,350,322	+				+0.5
4,350,323	-				-0.6
4,350,330	-				-1.3
4,350,391	+				-0.4
4,350,468	-		BT3374	0.13	-1.7
4,350,504	-		BT3374	0.16	-0.7
4,350,532	+		BT3374	0.19	-3.1
4,350,536	+		BT3374	0.19	-0.8
4,350,536	+		BT3374	0.19	-1.9
4,350,537	-		BT3374	0.19	-1.7
4,350,537	-		BT3374	0.19	+0.4
4,350,537	-		BT3374	0.19	-1.9
4,350,537	-		BT3374	0.19	-1.7
4,350,689	+		BT3374	0.32	-3.1
4,350,703	-		BT3374	0.33	+2.0
4,350,782	+		BT3374	0.40	-1.6
4,350,876	+		BT3374	0.48	-2.7
4,350,876	+		BT3374	0.48	-1.2
4,350,877	-		BT3374	0.48	+0.9
4,351,013	+		BT3374	0.59	-1.8
4,351,014	-		BT3374	0.59	-0.4
4,351,049	-		BT3374	0.62	-1.4
4,351,104	-		BT3374	0.67	-1.7
4,351,134	+		BT3374	0.69	-2.2
4,351,229	-		BT3374	0.77	+0.9
4,351,316	+		BT3374	0.85	-0.2
4,351,378	-				-1.4
4,351,390	-				-0.4
4,351,430	+				-2.3
4,351,434	+				-1.6
4,351,438	-				-2.1
4,351,459	+				-0.4
4,351,476	+				-1.6
4,351,479	-				-1.6
4,351,514	-				-0.0
4,351,567	-				-0.3
4,351,704	+		BT3375	0.17	-1.2
4,351,715	-		BT3375	0.17	-0.9
4,351,715	-		BT3375	0.17	-0.7
4,351,809	-		BT3375	0.26	-2.3
4,351,845	+		BT3375	0.29	+0.5
4,351,846	-		BT3375	0.29	-0.1
4,351,848	-		BT3375	0.29	-2.5
4,351,935	+		BT3375	0.36	-0.7
4,351,936	-		BT3375	0.37	-0.7
4,351,936	-		BT3375	0.37	-1.9
4,351,936	-		BT3375	0.37	-1.3
4,351,938	-		BT3375	0.37	-0.4
4,351,983	-		BT3375	0.41	-1.8
4,352,021	+		BT3375	0.44	-2.5
4,352,051	-		BT3375	0.46	+0.1
4,352,067	+		BT3375	0.48	-0.8
4,352,083	-		BT3375	0.49	-1.6
4,352,086	-		BT3375	0.49	-2.5
4,352,103	-		BT3375	0.51	+0.3
4,352,106	+		BT3375	0.51	-0.9
4,352,106	+		BT3375	0.51	-0.2
4,352,214	-		BT3375	0.60	-1.4
4,352,283	-		BT3375	0.66	-0.7
4,352,283	-		BT3375	0.66	-0.1
4,352,283	-		BT3375	0.66	-2.3
4,352,287	-		BT3375	0.67	+0.9
4,352,287	-		BT3375	0.67	-3.1
4,352,296	-		BT3375	0.68	-1.3
4,352,299	+		BT3375	0.68	-0.9
4,352,300	-		BT3375	0.68	-1.4
4,352,323	-		BT3375	0.70	-2.4
4,352,324	+		BT3375	0.70	-0.9
4,352,369	-		BT3375	0.74	-1.4
4,352,369	-		BT3375	0.74	-1.2
4,352,399	+		BT3375	0.76	-1.9
4,352,420	-		BT3375	0.78	-0.1
4,352,430	-		BT3375	0.79	-2.2