Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT_2070

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
2,590,810	-		BT2069	0.19	-2.8
2,590,812	-		BT2069	0.20	+1.3
2,590,826	-		BT2069	0.22	-1.1
2,590,837	-		BT2069	0.24	-0.8
2,590,870	+		BT2069	0.29	-0.8
2,590,874	-		BT2069	0.30	-0.9
2,590,874	-		BT2069	0.30	+0.8
2,590,874	-		BT2069	0.30	+0.6
2,590,902	-		BT2069	0.34	+0.3
2,590,909	+		BT2069	0.35	-0.8
2,590,914	-		BT2069	0.36	+0.0
2,590,914	-		BT2069	0.36	-0.4
2,590,937	+		BT2069	0.39	-0.8
2,590,990	+		BT2069	0.48	-0.0
2,590,990	+		BT2069	0.48	+0.4
2,591,015	+		BT2069	0.52	+0.9
2,591,015	+		BT2069	0.52	+0.7
2,591,038	+		BT2069	0.55	-1.4
2,591,111	-		BT2069	0.67	-1.8
2,591,135	+		BT2069	0.71	-0.1
2,591,206	-		BT2069	0.82	+0.5
2,591,207	+		BT2069	0.82	-0.7
2,591,233	+		BT2069	0.86	+0.2
2,591,245	+		BT2069	0.88	-0.4
2,591,251	-		BT2069	0.89	-0.5
2,591,257	-		BT2069	0.90	-0.4
2,591,264	-				-0.3
2,591,270	+				-0.9
2,591,271	-				-0.8
2,591,273	-				-0.7
2,591,273	-				-0.9
2,591,273	-				+0.3
2,591,277	+				-0.1
2,591,289	-				-0.1
2,591,313	-				-1.6
2,591,316	+				+0.5
2,591,398	+				-0.9
2,591,411	-				+2.1
2,591,417	+				-1.1
2,591,434	-				-0.4
2,591,458	+				+0.9
2,591,496	-				-1.5
2,591,553	+				-0.5
2,591,554	-				+0.5
2,591,606	-				-1.1
2,591,606	-				-0.2
2,591,619	-				+0.0
2,591,674	+				+0.1
2,591,691	-				-0.6
2,591,694	-				+1.0
2,591,738	+				-0.6
2,591,739	-				-0.3
2,591,740	+				-0.6
2,591,766	-				+0.5
2,591,838	-				-1.4
2,591,838	-				-1.2
2,591,894	-		BT_2070	0.13	-1.2
2,591,895	+		BT_2070	0.14	-0.4
2,591,896	-		BT_2070	0.14	+0.6
2,591,908	+		BT_2070	0.15	-1.8
2,592,103	+		BT_2070	0.30	-0.7
2,592,119	+		BT_2070	0.31	-1.5
2,592,119	+		BT_2070	0.31	-1.5
2,592,124	+		BT_2070	0.31	+0.1
2,592,154	+		BT_2070	0.33	-1.5
2,592,155	-		BT_2070	0.33	-0.3
2,592,155	-		BT_2070	0.33	-2.8
2,592,155	-		BT_2070	0.33	-1.5
2,592,158	+		BT_2070	0.34	-1.1
2,592,159	-		BT_2070	0.34	-1.6
2,592,162	+		BT_2070	0.34	-1.6
2,592,192	-		BT_2070	0.36	-1.1
2,592,216	-		BT_2070	0.38	-0.6
2,592,289	+		BT_2070	0.44	+1.2
2,592,289	+		BT_2070	0.44	-0.3
2,592,289	+		BT_2070	0.44	-0.6
2,592,290	-		BT_2070	0.44	-0.3
2,592,293	+		BT_2070	0.44	-1.2
2,592,294	-		BT_2070	0.44	-2.4
2,592,294	-		BT_2070	0.44	-0.3
2,592,422	+		BT_2070	0.54	-0.3
2,592,423	-		BT_2070	0.54	-1.6
2,592,509	+		BT_2070	0.61	-2.2
2,592,510	-		BT_2070	0.61	-1.1
2,592,512	-		BT_2070	0.61	+1.0
2,592,545	+		BT_2070	0.63	+0.0
2,592,545	+		BT_2070	0.63	-0.5
2,592,585	-		BT_2070	0.66	-1.1
2,592,638	+		BT_2070	0.70	-0.3
2,592,701	+		BT_2070	0.75	-1.9
2,592,702	-		BT_2070	0.75	-0.2
2,592,890	+		BT_2070	0.90	-1.9
2,592,903	+				-0.7
2,592,903	+				-0.4
2,592,936	+				-1.9
2,592,937	-				-0.7
2,593,048	+				-1.7
2,593,048	+				-0.6
2,593,048	+				-0.1
2,593,065	-				+0.6
2,593,065	-				-0.8
2,593,075	+				-0.7
2,593,131	+				-0.6
2,593,143	+				-0.9
2,593,144	-				-1.2
2,593,247	+		BT2071	0.13	-1.3
2,593,368	+		BT2071	0.24	+2.5
2,593,368	+		BT2071	0.24	-1.9
2,593,369	-		BT2071	0.24	-0.5
2,593,428	-		BT2071	0.29	-1.1
2,593,463	+		BT2071	0.32	+0.5
2,593,486	-		BT2071	0.34	-0.1
2,593,784	+		BT2071	0.59	-0.6
2,593,785	-		BT2071	0.59	-1.3
2,593,832	+		BT2071	0.63	-1.2
2,593,832	+		BT2071	0.63	+0.1
2,593,832	+		BT2071	0.63	-0.8
2,593,833	-		BT2071	0.63	-2.2
2,593,833	-		BT2071	0.63	-1.6
2,593,834	+		BT2071	0.63	-1.4
2,593,835	-		BT2071	0.63	-1.2
2,593,835	-		BT2071	0.63	-1.0
2,593,835	-		BT2071	0.63	-2.1
2,593,835	-		BT2071	0.63	-2.5
2,593,837	-		BT2071	0.63	-3.2
2,593,837	-		BT2071	0.63	-1.6
2,593,837	-		BT2071	0.63	-1.1
2,593,846	-		BT2071	0.64	-0.5