Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2069

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
2,589,711	+		BT2068	0.16	+0.9
2,589,711	+		BT2068	0.16	-1.3
2,589,776	-		BT2068	0.24	-1.2
2,589,799	+		BT2068	0.27	-1.0
2,589,800	-		BT2068	0.27	-1.0
2,589,800	-		BT2068	0.27	-0.1
2,589,800	-		BT2068	0.27	+0.2
2,589,820	+		BT2068	0.30	+0.8
2,589,860	+		BT2068	0.35	-0.4
2,589,918	-		BT2068	0.43	-0.5
2,589,918	-		BT2068	0.43	-0.6
2,589,950	-		BT2068	0.47	-0.2
2,589,970	+		BT2068	0.50	+0.4
2,589,976	-		BT2068	0.51	+0.4
2,589,994	+		BT2068	0.53	-1.1
2,589,995	-		BT2068	0.53	-1.5
2,589,995	-		BT2068	0.53	-1.4
2,590,005	+		BT2068	0.54	-1.5
2,590,186	-		BT2068	0.78	+1.1
2,590,186	-		BT2068	0.78	-1.4
2,590,345	-				-1.6
2,590,347	-				-0.1
2,590,347	-				-0.9
2,590,413	-				-0.2
2,590,466	-				+0.4
2,590,473	-				+0.4
2,590,506	+				+0.8
2,590,538	+				-1.5
2,590,556	-				+0.4
2,590,603	-				-0.5
2,590,680	+				-0.2
2,590,810	-		BT2069	0.19	-2.8
2,590,812	-		BT2069	0.20	+1.3
2,590,826	-		BT2069	0.22	-1.1
2,590,837	-		BT2069	0.24	-0.8
2,590,870	+		BT2069	0.29	-0.8
2,590,874	-		BT2069	0.30	-0.9
2,590,874	-		BT2069	0.30	+0.8
2,590,874	-		BT2069	0.30	+0.6
2,590,902	-		BT2069	0.34	+0.3
2,590,909	+		BT2069	0.35	-0.8
2,590,914	-		BT2069	0.36	+0.0
2,590,914	-		BT2069	0.36	-0.4
2,590,937	+		BT2069	0.39	-0.8
2,590,990	+		BT2069	0.48	-0.0
2,590,990	+		BT2069	0.48	+0.4
2,591,015	+		BT2069	0.52	+0.9
2,591,015	+		BT2069	0.52	+0.7
2,591,038	+		BT2069	0.55	-1.4
2,591,111	-		BT2069	0.67	-1.8
2,591,135	+		BT2069	0.71	-0.1
2,591,206	-		BT2069	0.82	+0.5
2,591,207	+		BT2069	0.82	-0.7
2,591,233	+		BT2069	0.86	+0.2
2,591,245	+		BT2069	0.88	-0.4
2,591,251	-		BT2069	0.89	-0.5
2,591,257	-		BT2069	0.90	-0.4
2,591,264	-				-0.3
2,591,270	+				-0.9
2,591,271	-				-0.8
2,591,273	-				-0.7
2,591,273	-				-0.9
2,591,273	-				+0.3
2,591,277	+				-0.1
2,591,289	-				-0.1
2,591,313	-				-1.6
2,591,316	+				+0.5
2,591,398	+				-0.9
2,591,411	-				+2.1
2,591,417	+				-1.1
2,591,434	-				-0.4
2,591,458	+				+0.9
2,591,496	-				-1.5
2,591,553	+				-0.5
2,591,554	-				+0.5
2,591,606	-				-1.1
2,591,606	-				-0.2
2,591,619	-				+0.0
2,591,674	+				+0.1
2,591,691	-				-0.6
2,591,694	-				+1.0
2,591,738	+				-0.6
2,591,739	-				-0.3
2,591,740	+				-0.6
2,591,766	-				+0.5
2,591,838	-				-1.4
2,591,838	-				-1.2
2,591,894	-		BT_2070	0.13	-1.2
2,591,895	+		BT_2070	0.14	-0.4
2,591,896	-		BT_2070	0.14	+0.6
2,591,908	+		BT_2070	0.15	-1.8
2,592,103	+		BT_2070	0.30	-0.7
2,592,119	+		BT_2070	0.31	-1.5
2,592,119	+		BT_2070	0.31	-1.5
2,592,124	+		BT_2070	0.31	+0.1
2,592,154	+		BT_2070	0.33	-1.5
2,592,155	-		BT_2070	0.33	-0.3
2,592,155	-		BT_2070	0.33	-2.8
2,592,155	-		BT_2070	0.33	-1.5
2,592,158	+		BT_2070	0.34	-1.1
2,592,159	-		BT_2070	0.34	-1.6
2,592,162	+		BT_2070	0.34	-1.6
2,592,192	-		BT_2070	0.36	-1.1
2,592,216	-		BT_2070	0.38	-0.6
2,592,289	+		BT_2070	0.44	+1.2
2,592,289	+		BT_2070	0.44	-0.3
2,592,289	+		BT_2070	0.44	-0.6
2,592,290	-		BT_2070	0.44	-0.3
2,592,293	+		BT_2070	0.44	-1.2
2,592,294	-		BT_2070	0.44	-2.4
2,592,294	-		BT_2070	0.44	-0.3