Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0679 and BT0680 are separated by 15 nucleotides BT0680 and BT0681 are separated by 97 nucleotides
BT0679: BT0679 - cation efflux system protein czcB (NCBI ptt file), at 840,662 to 841,798
BT0679
BT0680: BT0680 - cation efflux system protein czcA (NCBI ptt file), at 841,814 to 844,939
BT0680
BT0681: BT0681 - two-component system sensor histidine kinase (NCBI ptt file), at 845,037 to 846,368
BT0681
Position (kb) 841
842
843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 840.865 kb on - strand, within BT0679 at 841.099 kb on + strand, within BT0679 at 841.376 kb on - strand, within BT0679 at 841.692 kb on - strand at 841.692 kb on - strand at 841.776 kb on - strand at 841.778 kb on - strand at 841.811 kb on - strand at 841.814 kb on - strand at 841.834 kb on + strand at 841.835 kb on - strand at 841.836 kb on + strand at 842.269 kb on - strand, within BT0680 at 842.452 kb on + strand, within BT0680 at 842.461 kb on - strand, within BT0680 at 842.499 kb on + strand, within BT0680 at 842.725 kb on + strand, within BT0680 at 842.731 kb on - strand, within BT0680 at 842.752 kb on - strand, within BT0680 at 842.775 kb on + strand, within BT0680 at 842.986 kb on + strand, within BT0680 at 843.008 kb on - strand, within BT0680 at 843.011 kb on - strand, within BT0680 at 843.011 kb on - strand, within BT0680 at 843.242 kb on + strand, within BT0680 at 843.244 kb on + strand, within BT0680 at 843.244 kb on + strand, within BT0680 at 843.245 kb on - strand, within BT0680 at 843.275 kb on - strand, within BT0680 at 843.540 kb on + strand, within BT0680 at 843.589 kb on - strand, within BT0680 at 843.589 kb on - strand, within BT0680 at 843.589 kb on - strand, within BT0680 at 843.876 kb on - strand, within BT0680 at 843.907 kb on + strand, within BT0680 at 843.919 kb on + strand, within BT0680 at 843.979 kb on + strand, within BT0680 at 844.118 kb on + strand, within BT0680 at 844.157 kb on - strand, within BT0680 at 844.336 kb on - strand, within BT0680 at 844.429 kb on - strand, within BT0680 at 844.431 kb on + strand, within BT0680 at 844.431 kb on + strand, within BT0680 at 844.431 kb on + strand, within BT0680 at 844.460 kb on - strand, within BT0680 at 844.630 kb on + strand at 844.631 kb on - strand at 844.882 kb on - strand at 844.886 kb on + strand at 844.887 kb on - strand at 844.887 kb on - strand at 844.901 kb on + strand at 845.005 kb on + strand at 845.006 kb on - strand at 845.053 kb on - strand at 845.101 kb on + strand at 845.153 kb on - strand at 845.296 kb on + strand, within BT0681 at 845.561 kb on + strand, within BT0681 at 845.563 kb on + strand, within BT0681 at 845.807 kb on + strand, within BT0681 at 845.823 kb on - strand, within BT0681 at 845.929 kb on + strand, within BT0681
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 840,865 - BT0679 0.18 +0.3 841,099 + BT0679 0.38 -2.3 841,376 - BT0679 0.63 -0.1 841,692 - -1.3 841,692 - -1.7 841,776 - -0.4 841,778 - +0.8 841,811 - +0.1 841,814 - -0.5 841,834 + -0.2 841,835 - -0.1 841,836 + -0.8 842,269 - BT0680 0.15 -2.4 842,452 + BT0680 0.20 -0.1 842,461 - BT0680 0.21 -2.0 842,499 + BT0680 0.22 +1.8 842,725 + BT0680 0.29 -2.1 842,731 - BT0680 0.29 -0.8 842,752 - BT0680 0.30 -1.9 842,775 + BT0680 0.31 -0.5 842,986 + BT0680 0.37 -1.1 843,008 - BT0680 0.38 -0.9 843,011 - BT0680 0.38 -2.2 843,011 - BT0680 0.38 -1.7 843,242 + BT0680 0.46 +1.5 843,244 + BT0680 0.46 -2.7 843,244 + BT0680 0.46 -1.0 843,245 - BT0680 0.46 -0.5 843,275 - BT0680 0.47 -0.8 843,540 + BT0680 0.55 +0.3 843,589 - BT0680 0.57 -1.8 843,589 - BT0680 0.57 +0.0 843,589 - BT0680 0.57 -0.9 843,876 - BT0680 0.66 -0.2 843,907 + BT0680 0.67 -0.8 843,919 + BT0680 0.67 -0.2 843,979 + BT0680 0.69 -0.1 844,118 + BT0680 0.74 -1.5 844,157 - BT0680 0.75 +0.2 844,336 - BT0680 0.81 -0.3 844,429 - BT0680 0.84 -2.4 844,431 + BT0680 0.84 -0.4 844,431 + BT0680 0.84 -1.5 844,431 + BT0680 0.84 -1.2 844,460 - BT0680 0.85 -0.1 844,630 + -0.7 844,631 - +0.6 844,882 - -2.0 844,886 + +0.5 844,887 - -1.5 844,887 - -0.3 844,901 + -0.7 845,005 + -0.8 845,006 - +0.8 845,053 - +0.6 845,101 + -0.7 845,153 - -0.7 845,296 + BT0681 0.19 -1.1 845,561 + BT0681 0.39 +2.0 845,563 + BT0681 0.39 -0.6 845,807 + BT0681 0.58 -0.6 845,823 - BT0681 0.59 +0.4 845,929 + BT0681 0.67 +1.2
Or see this region's nucleotide sequence