Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0228 and BT0229 are separated by 189 nucleotides BT0229 and BT0230 are separated by 111 nucleotides
BT0228: BT0228 - putative protein involved in recombination (NCBI ptt file), at 247,354 to 249,387
BT0228
BT0229: BT0229 - conserved hypothetical protein (NCBI ptt file), at 249,577 to 250,602
BT0229
BT0230: BT0230 - conserved hypothetical protein (NCBI ptt file), at 250,714 to 252,072
BT0230
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 248.585 kb on + strand, within BT0228 at 248.777 kb on + strand, within BT0228 at 248.936 kb on + strand, within BT0228 at 248.937 kb on - strand, within BT0228 at 248.937 kb on - strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.238 kb on - strand at 249.257 kb on - strand at 249.419 kb on + strand at 249.459 kb on - strand at 249.461 kb on + strand at 249.462 kb on - strand at 249.891 kb on + strand, within BT0229 at 249.892 kb on - strand, within BT0229 at 250.070 kb on + strand, within BT0229 at 250.112 kb on + strand, within BT0229 at 250.113 kb on - strand, within BT0229 at 250.113 kb on - strand, within BT0229 at 250.186 kb on - strand, within BT0229 at 250.187 kb on + strand, within BT0229 at 250.256 kb on + strand, within BT0229 at 250.302 kb on + strand, within BT0229 at 250.320 kb on - strand, within BT0229 at 250.386 kb on + strand, within BT0229 at 250.446 kb on + strand, within BT0229 at 250.505 kb on - strand at 250.505 kb on - strand at 250.568 kb on + strand at 250.619 kb on + strand at 250.660 kb on + strand at 250.812 kb on - strand at 250.898 kb on + strand, within BT0230 at 250.962 kb on - strand, within BT0230 at 250.976 kb on + strand, within BT0230 at 250.976 kb on + strand, within BT0230 at 250.990 kb on + strand, within BT0230 at 251.002 kb on + strand, within BT0230 at 251.068 kb on + strand, within BT0230 at 251.203 kb on - strand, within BT0230 at 251.238 kb on + strand, within BT0230 at 251.249 kb on + strand, within BT0230 at 251.474 kb on - strand, within BT0230
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 248,585 + BT0228 0.61 -2.1 248,777 + BT0228 0.70 -1.2 248,936 + BT0228 0.78 -0.3 248,937 - BT0228 0.78 +0.1 248,937 - BT0228 0.78 +0.2 249,110 + BT0228 0.86 +1.5 249,110 + BT0228 0.86 -0.4 249,110 + BT0228 0.86 +0.3 249,238 - -2.2 249,257 - -2.4 249,419 + -0.8 249,459 - +1.8 249,461 + -0.5 249,462 - +1.5 249,891 + BT0229 0.31 -2.7 249,892 - BT0229 0.31 -1.4 250,070 + BT0229 0.48 +0.5 250,112 + BT0229 0.52 -0.7 250,113 - BT0229 0.52 -0.5 250,113 - BT0229 0.52 -1.5 250,186 - BT0229 0.59 -1.2 250,187 + BT0229 0.59 -2.2 250,256 + BT0229 0.66 -2.5 250,302 + BT0229 0.71 +1.2 250,320 - BT0229 0.72 -1.1 250,386 + BT0229 0.79 -0.8 250,446 + BT0229 0.85 -0.6 250,505 - -0.6 250,505 - -1.8 250,568 + -1.1 250,619 + -1.8 250,660 + -2.1 250,812 - +1.5 250,898 + BT0230 0.14 -0.8 250,962 - BT0230 0.18 +1.1 250,976 + BT0230 0.19 -1.0 250,976 + BT0230 0.19 +1.1 250,990 + BT0230 0.20 -1.7 251,002 + BT0230 0.21 +0.5 251,068 + BT0230 0.26 -0.6 251,203 - BT0230 0.36 +0.1 251,238 + BT0230 0.39 -2.1 251,249 + BT0230 0.39 -2.0 251,474 - BT0230 0.56 -1.8
Or see this region's nucleotide sequence