Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4958 and Psyr_4959 are separated by 25 nucleotides Psyr_4959 and Psyr_4960 overlap by 4 nucleotides Psyr_4960 and Psyr_4961 overlap by 4 nucleotides Psyr_4961 and Psyr_4962 are separated by 30 nucleotides
Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343
_4958
Psyr_4959: Psyr_4959 - conserved hypothetical protein, at 5,879,369 to 5,880,124
_4959
Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464
_4960
Psyr_4961: Psyr_4961 - conserved hypothetical protein, at 5,881,461 to 5,882,174
_4961
Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137
_4962
Position (kb) 5880
5881
5882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5879.256 kb on - strand at 5879.329 kb on + strand at 5879.329 kb on + strand at 5879.329 kb on + strand at 5879.356 kb on + strand at 5879.356 kb on + strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.368 kb on - strand at 5879.368 kb on - strand at 5879.374 kb on + strand at 5879.375 kb on - strand at 5879.616 kb on - strand, within Psyr_4959 at 5879.616 kb on - strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.864 kb on - strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5880.004 kb on + strand, within Psyr_4959 at 5880.126 kb on + strand at 5880.185 kb on - strand at 5880.421 kb on + strand, within Psyr_4960 at 5880.422 kb on - strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.614 kb on - strand, within Psyr_4960 at 5880.619 kb on + strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.852 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.923 kb on - strand, within Psyr_4960 at 5880.923 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.372 kb on + strand at 5881.373 kb on - strand at 5881.373 kb on - strand at 5881.409 kb on - strand at 5881.426 kb on - strand at 5881.458 kb on + strand at 5881.458 kb on + strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.511 kb on + strand at 5881.511 kb on + strand at 5881.511 kb on + strand at 5881.512 kb on - strand at 5881.512 kb on - strand at 5881.512 kb on - strand at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.684 kb on - strand, within Psyr_4961 at 5881.776 kb on + strand, within Psyr_4961 at 5881.777 kb on - strand, within Psyr_4961 at 5881.869 kb on + strand, within Psyr_4961 at 5882.053 kb on + strand, within Psyr_4961 at 5882.062 kb on - strand, within Psyr_4961 at 5882.083 kb on + strand, within Psyr_4961 at 5882.084 kb on - strand, within Psyr_4961 at 5882.084 kb on - strand, within Psyr_4961 at 5882.084 kb on - strand, within Psyr_4961 at 5882.097 kb on + strand, within Psyr_4961 at 5882.098 kb on - strand, within Psyr_4961 at 5882.216 kb on - strand at 5882.216 kb on - strand at 5882.355 kb on + strand at 5882.356 kb on - strand at 5882.356 kb on - strand at 5882.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,879,256 - +1.3 5,879,329 + +0.1 5,879,329 + -0.0 5,879,329 + +2.8 5,879,356 + -0.1 5,879,356 + +2.0 5,879,357 - -0.3 5,879,357 - -1.9 5,879,357 - +0.8 5,879,357 - -1.2 5,879,360 + +0.9 5,879,360 + -0.1 5,879,360 + +1.2 5,879,361 - -0.2 5,879,361 - +1.2 5,879,361 - +0.6 5,879,361 - +0.6 5,879,367 + -1.0 5,879,367 + +1.2 5,879,367 + -0.7 5,879,367 + +0.7 5,879,368 - +0.2 5,879,368 - +0.0 5,879,374 + -1.4 5,879,375 - +0.6 5,879,616 - Psyr_4959 0.33 -0.4 5,879,616 - Psyr_4959 0.33 +1.0 5,879,777 + Psyr_4959 0.54 +1.2 5,879,777 + Psyr_4959 0.54 -3.2 5,879,777 + Psyr_4959 0.54 +0.4 5,879,777 + Psyr_4959 0.54 +1.3 5,879,777 + Psyr_4959 0.54 +1.2 5,879,777 + Psyr_4959 0.54 +1.0 5,879,777 + Psyr_4959 0.54 -0.6 5,879,777 + Psyr_4959 0.54 +0.7 5,879,777 + Psyr_4959 0.54 -0.9 5,879,777 + Psyr_4959 0.54 -0.3 5,879,777 + Psyr_4959 0.54 +1.7 5,879,778 - Psyr_4959 0.54 -0.4 5,879,778 - Psyr_4959 0.54 +1.0 5,879,778 - Psyr_4959 0.54 +0.5 5,879,778 - Psyr_4959 0.54 +0.8 5,879,778 - Psyr_4959 0.54 -1.0 5,879,778 - Psyr_4959 0.54 +1.3 5,879,778 - Psyr_4959 0.54 +0.6 5,879,864 - Psyr_4959 0.65 -0.4 5,879,909 + Psyr_4959 0.71 +0.0 5,879,909 + Psyr_4959 0.71 +0.6 5,879,909 + Psyr_4959 0.71 +0.1 5,879,909 + Psyr_4959 0.71 -0.6 5,879,909 + Psyr_4959 0.71 -0.4 5,879,909 + Psyr_4959 0.71 -0.0 5,879,909 + Psyr_4959 0.71 +0.5 5,879,909 + Psyr_4959 0.71 -0.5 5,879,909 + Psyr_4959 0.71 -1.0 5,879,909 + Psyr_4959 0.71 +1.6 5,879,909 + Psyr_4959 0.71 +1.5 5,879,909 + Psyr_4959 0.71 +0.4 5,879,909 + Psyr_4959 0.71 -0.8 5,879,910 - Psyr_4959 0.72 +0.4 5,879,910 - Psyr_4959 0.72 -0.4 5,879,910 - Psyr_4959 0.72 +0.9 5,879,910 - Psyr_4959 0.72 +0.2 5,879,910 - Psyr_4959 0.72 +0.4 5,879,910 - Psyr_4959 0.72 +1.1 5,879,910 - Psyr_4959 0.72 +0.0 5,879,910 - Psyr_4959 0.72 -0.4 5,879,910 - Psyr_4959 0.72 -0.1 5,879,910 - Psyr_4959 0.72 +0.2 5,879,910 - Psyr_4959 0.72 +2.0 5,879,910 - Psyr_4959 0.72 +0.4 5,879,910 - Psyr_4959 0.72 -0.1 5,879,910 - Psyr_4959 0.72 +0.5 5,879,910 - Psyr_4959 0.72 +0.3 5,879,910 - Psyr_4959 0.72 -1.0 5,880,004 + Psyr_4959 0.84 -0.0 5,880,126 + +1.0 5,880,185 - -0.2 5,880,421 + Psyr_4960 0.22 +1.2 5,880,422 - Psyr_4960 0.22 +0.7 5,880,460 + Psyr_4960 0.25 -2.9 5,880,460 + Psyr_4960 0.25 +1.0 5,880,460 + Psyr_4960 0.25 -0.3 5,880,461 - Psyr_4960 0.25 +1.4 5,880,461 - Psyr_4960 0.25 -0.5 5,880,614 - Psyr_4960 0.37 -2.8 5,880,619 + Psyr_4960 0.37 +0.4 5,880,620 - Psyr_4960 0.37 +2.2 5,880,620 - Psyr_4960 0.37 +0.2 5,880,620 - Psyr_4960 0.37 -0.2 5,880,620 - Psyr_4960 0.37 -0.2 5,880,852 + Psyr_4960 0.54 +1.4 5,880,922 + Psyr_4960 0.60 -2.3 5,880,922 + Psyr_4960 0.60 +1.7 5,880,923 - Psyr_4960 0.60 -2.7 5,880,923 - Psyr_4960 0.60 +0.1 5,881,118 - Psyr_4960 0.74 +0.2 5,881,118 - Psyr_4960 0.74 +0.2 5,881,118 - Psyr_4960 0.74 +0.0 5,881,118 - Psyr_4960 0.74 +0.3 5,881,165 + Psyr_4960 0.78 +0.1 5,881,165 + Psyr_4960 0.78 +0.4 5,881,165 + Psyr_4960 0.78 -1.1 5,881,166 - Psyr_4960 0.78 -0.3 5,881,166 - Psyr_4960 0.78 +0.3 5,881,166 - Psyr_4960 0.78 +1.0 5,881,342 + +0.6 5,881,342 + -0.8 5,881,342 + +1.1 5,881,342 + +0.0 5,881,342 + +0.4 5,881,342 + +1.2 5,881,343 - +0.0 5,881,343 - +1.1 5,881,343 - -0.1 5,881,343 - -0.6 5,881,343 - +2.3 5,881,372 + +0.1 5,881,373 - -0.7 5,881,373 - -0.1 5,881,409 - +0.2 5,881,426 - +1.6 5,881,458 + -0.5 5,881,458 + -0.4 5,881,459 - -0.2 5,881,459 - -2.0 5,881,459 - +0.1 5,881,511 + +0.0 5,881,511 + +1.0 5,881,511 + -0.7 5,881,512 - +0.1 5,881,512 - -1.4 5,881,512 - -0.4 5,881,653 + Psyr_4961 0.27 -0.6 5,881,653 + Psyr_4961 0.27 -0.1 5,881,653 + Psyr_4961 0.27 -0.7 5,881,653 + Psyr_4961 0.27 -1.5 5,881,653 + Psyr_4961 0.27 -1.3 5,881,653 + Psyr_4961 0.27 -0.0 5,881,654 - Psyr_4961 0.27 -0.4 5,881,654 - Psyr_4961 0.27 +0.1 5,881,684 - Psyr_4961 0.31 -0.4 5,881,776 + Psyr_4961 0.44 +0.9 5,881,777 - Psyr_4961 0.44 -0.9 5,881,869 + Psyr_4961 0.57 +0.2 5,882,053 + Psyr_4961 0.83 +1.2 5,882,062 - Psyr_4961 0.84 -1.5 5,882,083 + Psyr_4961 0.87 -0.4 5,882,084 - Psyr_4961 0.87 -1.4 5,882,084 - Psyr_4961 0.87 +0.1 5,882,084 - Psyr_4961 0.87 -1.0 5,882,097 + Psyr_4961 0.89 +1.7 5,882,098 - Psyr_4961 0.89 -0.4 5,882,216 - +1.2 5,882,216 - +0.2 5,882,355 + +0.3 5,882,356 - +0.9 5,882,356 - +0.1 5,882,382 + +0.8
Or see this region's nucleotide sequence