Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4421 and Psyr_4422 are separated by 142 nucleotides Psyr_4422 and Psyr_4423 are separated by 13 nucleotides Psyr_4423 and Psyr_4424 are separated by 84 nucleotides
Psyr_4421: Psyr_4421 - Protein of unknown function DUF1568, at 5,286,657 to 5,287,115
_4421
Psyr_4422: Psyr_4422 - Protein of unknown function DUF461, at 5,287,258 to 5,287,719
_4422
Psyr_4423: Psyr_4423 - conserved hypothetical protein, at 5,287,733 to 5,288,164
_4423
Psyr_4424: Psyr_4424 - Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix, at 5,288,249 to 5,289,622
_4424
Position (kb) 5287
5288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5286.307 kb on + strand at 5286.307 kb on + strand at 5286.307 kb on + strand at 5286.307 kb on + strand at 5286.309 kb on + strand at 5286.309 kb on + strand at 5286.309 kb on + strand at 5286.309 kb on + strand at 5286.309 kb on + strand at 5286.311 kb on + strand at 5286.321 kb on + strand at 5286.321 kb on + strand at 5286.321 kb on + strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.376 kb on - strand at 5286.678 kb on + strand at 5286.734 kb on + strand, within Psyr_4421 at 5286.734 kb on + strand, within Psyr_4421 at 5286.735 kb on - strand, within Psyr_4421 at 5286.735 kb on - strand, within Psyr_4421 at 5286.735 kb on - strand, within Psyr_4421 at 5286.735 kb on - strand, within Psyr_4421 at 5286.736 kb on + strand, within Psyr_4421 at 5286.854 kb on + strand, within Psyr_4421 at 5286.864 kb on + strand, within Psyr_4421 at 5286.864 kb on + strand, within Psyr_4421 at 5286.864 kb on + strand, within Psyr_4421 at 5286.864 kb on + strand, within Psyr_4421 at 5286.864 kb on + strand, within Psyr_4421 at 5286.865 kb on - strand, within Psyr_4421 at 5286.865 kb on - strand, within Psyr_4421 at 5286.865 kb on - strand, within Psyr_4421 at 5286.865 kb on - strand, within Psyr_4421 at 5286.877 kb on - strand, within Psyr_4421 at 5286.888 kb on - strand, within Psyr_4421 at 5286.924 kb on + strand, within Psyr_4421 at 5286.924 kb on + strand, within Psyr_4421 at 5286.925 kb on - strand, within Psyr_4421 at 5286.936 kb on + strand, within Psyr_4421 at 5287.048 kb on - strand, within Psyr_4421 at 5287.051 kb on + strand, within Psyr_4421 at 5287.051 kb on + strand, within Psyr_4421 at 5287.052 kb on - strand, within Psyr_4421 at 5287.052 kb on - strand, within Psyr_4421 at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.127 kb on + strand at 5287.128 kb on - strand at 5287.128 kb on - strand at 5287.128 kb on - strand at 5287.128 kb on - strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.129 kb on + strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.130 kb on - strand at 5287.218 kb on + strand at 5287.218 kb on + strand at 5287.219 kb on - strand at 5287.219 kb on - strand at 5287.219 kb on - strand at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.399 kb on + strand, within Psyr_4422 at 5287.400 kb on - strand, within Psyr_4422 at 5287.400 kb on - strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.539 kb on - strand, within Psyr_4422 at 5287.539 kb on - strand, within Psyr_4422 at 5287.689 kb on - strand at 5287.689 kb on - strand at 5287.771 kb on + strand at 5287.771 kb on + strand at 5287.772 kb on - strand at 5287.772 kb on - strand at 5287.772 kb on - strand at 5287.772 kb on - strand at 5288.162 kb on + strand at 5288.162 kb on + strand at 5288.232 kb on - strand at 5288.273 kb on + strand at 5288.357 kb on + strand at 5288.357 kb on + strand at 5288.358 kb on - strand at 5288.358 kb on - strand at 5288.390 kb on + strand, within Psyr_4424 at 5288.390 kb on + strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.464 kb on + strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.468 kb on + strand, within Psyr_4424 at 5288.468 kb on + strand, within Psyr_4424 at 5288.469 kb on - strand, within Psyr_4424 at 5288.493 kb on - strand, within Psyr_4424
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,286,307 + +0.5 5,286,307 + +0.8 5,286,307 + -1.2 5,286,307 + +1.1 5,286,309 + +0.4 5,286,309 + +2.7 5,286,309 + -0.7 5,286,309 + +0.7 5,286,309 + +1.3 5,286,311 + +0.0 5,286,321 + -2.2 5,286,321 + +0.1 5,286,321 + +0.1 5,286,376 - -0.5 5,286,376 - +0.3 5,286,376 - -1.2 5,286,376 - -0.7 5,286,376 - +0.2 5,286,376 - -1.0 5,286,376 - +0.4 5,286,376 - -2.2 5,286,376 - +1.4 5,286,678 + -0.4 5,286,734 + Psyr_4421 0.17 +0.4 5,286,734 + Psyr_4421 0.17 +0.5 5,286,735 - Psyr_4421 0.17 -1.3 5,286,735 - Psyr_4421 0.17 -0.6 5,286,735 - Psyr_4421 0.17 -2.0 5,286,735 - Psyr_4421 0.17 -0.6 5,286,736 + Psyr_4421 0.17 +0.0 5,286,854 + Psyr_4421 0.43 +1.1 5,286,864 + Psyr_4421 0.45 +2.2 5,286,864 + Psyr_4421 0.45 -0.4 5,286,864 + Psyr_4421 0.45 -0.5 5,286,864 + Psyr_4421 0.45 +1.2 5,286,864 + Psyr_4421 0.45 +0.6 5,286,865 - Psyr_4421 0.45 +0.8 5,286,865 - Psyr_4421 0.45 +0.5 5,286,865 - Psyr_4421 0.45 -1.0 5,286,865 - Psyr_4421 0.45 -1.9 5,286,877 - Psyr_4421 0.48 +0.1 5,286,888 - Psyr_4421 0.50 -0.7 5,286,924 + Psyr_4421 0.58 -1.9 5,286,924 + Psyr_4421 0.58 +1.6 5,286,925 - Psyr_4421 0.58 -0.2 5,286,936 + Psyr_4421 0.61 -1.7 5,287,048 - Psyr_4421 0.85 -2.1 5,287,051 + Psyr_4421 0.86 +0.8 5,287,051 + Psyr_4421 0.86 +1.4 5,287,052 - Psyr_4421 0.86 -0.7 5,287,052 - Psyr_4421 0.86 +0.2 5,287,127 + +0.3 5,287,127 + -0.2 5,287,127 + -0.2 5,287,127 + +1.0 5,287,127 + +1.6 5,287,127 + -0.2 5,287,127 + +0.5 5,287,127 + -0.5 5,287,128 - -0.6 5,287,128 - -1.6 5,287,128 - -0.9 5,287,128 - +2.4 5,287,129 + -0.8 5,287,129 + +0.1 5,287,129 + +0.8 5,287,129 + -2.3 5,287,129 + -1.0 5,287,129 + +1.1 5,287,129 + -1.9 5,287,130 - -0.4 5,287,130 - -0.3 5,287,130 - -0.1 5,287,130 - -2.7 5,287,130 - +1.0 5,287,130 - +1.2 5,287,130 - +0.7 5,287,130 - -0.7 5,287,130 - -3.6 5,287,130 - -0.3 5,287,130 - -2.0 5,287,130 - +0.2 5,287,130 - -1.7 5,287,218 + +3.4 5,287,218 + +1.4 5,287,219 - -0.5 5,287,219 - -1.8 5,287,219 - -1.6 5,287,324 + Psyr_4422 0.14 -1.6 5,287,324 + Psyr_4422 0.14 +0.6 5,287,324 + Psyr_4422 0.14 -0.5 5,287,324 + Psyr_4422 0.14 -0.9 5,287,324 + Psyr_4422 0.14 -0.5 5,287,325 - Psyr_4422 0.15 +0.8 5,287,325 - Psyr_4422 0.15 -1.0 5,287,325 - Psyr_4422 0.15 -0.2 5,287,325 - Psyr_4422 0.15 -0.9 5,287,325 - Psyr_4422 0.15 -0.3 5,287,325 - Psyr_4422 0.15 -2.6 5,287,325 - Psyr_4422 0.15 -1.9 5,287,325 - Psyr_4422 0.15 -0.8 5,287,399 + Psyr_4422 0.31 +0.1 5,287,400 - Psyr_4422 0.31 -2.3 5,287,400 - Psyr_4422 0.31 -1.0 5,287,490 + Psyr_4422 0.50 +0.2 5,287,490 + Psyr_4422 0.50 +0.2 5,287,490 + Psyr_4422 0.50 -0.4 5,287,490 + Psyr_4422 0.50 +1.0 5,287,490 + Psyr_4422 0.50 -1.0 5,287,490 + Psyr_4422 0.50 +0.8 5,287,490 + Psyr_4422 0.50 +1.7 5,287,491 - Psyr_4422 0.50 +1.7 5,287,491 - Psyr_4422 0.50 -1.3 5,287,491 - Psyr_4422 0.50 -2.0 5,287,491 - Psyr_4422 0.50 -0.9 5,287,491 - Psyr_4422 0.50 -2.2 5,287,491 - Psyr_4422 0.50 -3.0 5,287,491 - Psyr_4422 0.50 -0.2 5,287,491 - Psyr_4422 0.50 +0.1 5,287,491 - Psyr_4422 0.50 -0.2 5,287,491 - Psyr_4422 0.50 -3.5 5,287,491 - Psyr_4422 0.50 -1.5 5,287,539 - Psyr_4422 0.61 -1.0 5,287,539 - Psyr_4422 0.61 -1.1 5,287,689 - +0.1 5,287,689 - -3.3 5,287,771 + +0.9 5,287,771 + -0.7 5,287,772 - +0.5 5,287,772 - -0.9 5,287,772 - -0.4 5,287,772 - -3.4 5,288,162 + +1.7 5,288,162 + -1.5 5,288,232 - -2.3 5,288,273 + +0.8 5,288,357 + -0.4 5,288,357 + +0.1 5,288,358 - -1.0 5,288,358 - -3.6 5,288,390 + Psyr_4424 0.10 -0.7 5,288,390 + Psyr_4424 0.10 -2.7 5,288,391 - Psyr_4424 0.10 -2.3 5,288,464 + Psyr_4424 0.16 +0.4 5,288,465 - Psyr_4424 0.16 -0.6 5,288,465 - Psyr_4424 0.16 -1.9 5,288,468 + Psyr_4424 0.16 -0.4 5,288,468 + Psyr_4424 0.16 +0.4 5,288,469 - Psyr_4424 0.16 -0.3 5,288,493 - Psyr_4424 0.18 -0.6
Or see this region's nucleotide sequence