Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4391 and Psyr_4392 overlap by 4 nucleotides Psyr_4392 and Psyr_4393 overlap by 1 nucleotides
Psyr_4391: Psyr_4391 - type II and III secretion system protein, at 5,252,728 to 5,253,978
_4391
Psyr_4392: Psyr_4392 - pilus assembly protein CpaE, at 5,253,975 to 5,255,165
_4392
Psyr_4393: Psyr_4393 - type II secretion system protein E, at 5,255,165 to 5,256,421
_4393
Position (kb) 5253
5254
5255
5256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5253.183 kb on + strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.386 kb on - strand, within Psyr_4391 at 5253.490 kb on - strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.502 kb on + strand, within Psyr_4391 at 5253.503 kb on - strand, within Psyr_4391 at 5253.904 kb on + strand at 5253.904 kb on + strand at 5253.904 kb on + strand at 5253.904 kb on + strand at 5253.904 kb on + strand at 5253.904 kb on + strand at 5253.905 kb on - strand at 5254.022 kb on + strand at 5254.479 kb on - strand, within Psyr_4392 at 5254.644 kb on + strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.809 kb on + strand, within Psyr_4392 at 5254.810 kb on - strand, within Psyr_4392 at 5255.249 kb on + strand at 5255.249 kb on + strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.342 kb on + strand, within Psyr_4393 at 5255.343 kb on - strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.118 kb on + strand, within Psyr_4393
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,253,183 + Psyr_4391 0.36 +1.0 5,253,386 - Psyr_4391 0.53 +0.1 5,253,386 - Psyr_4391 0.53 +0.2 5,253,490 - Psyr_4391 0.61 -1.3 5,253,502 + Psyr_4391 0.62 -1.2 5,253,502 + Psyr_4391 0.62 -0.1 5,253,502 + Psyr_4391 0.62 -0.8 5,253,502 + Psyr_4391 0.62 +0.5 5,253,503 - Psyr_4391 0.62 -1.0 5,253,904 + +0.6 5,253,904 + +0.2 5,253,904 + +0.4 5,253,904 + -2.3 5,253,904 + -0.9 5,253,904 + -0.7 5,253,905 - +0.1 5,254,022 + +3.0 5,254,479 - Psyr_4392 0.42 +0.1 5,254,644 + Psyr_4392 0.56 +1.4 5,254,645 - Psyr_4392 0.56 +0.2 5,254,645 - Psyr_4392 0.56 -0.3 5,254,692 + Psyr_4392 0.60 +0.6 5,254,692 + Psyr_4392 0.60 -3.4 5,254,692 + Psyr_4392 0.60 +0.8 5,254,692 + Psyr_4392 0.60 -0.4 5,254,692 + Psyr_4392 0.60 -0.4 5,254,692 + Psyr_4392 0.60 -0.9 5,254,692 + Psyr_4392 0.60 -0.6 5,254,692 + Psyr_4392 0.60 +0.4 5,254,692 + Psyr_4392 0.60 +0.2 5,254,692 + Psyr_4392 0.60 +0.6 5,254,692 + Psyr_4392 0.60 +0.1 5,254,692 + Psyr_4392 0.60 -3.6 5,254,692 + Psyr_4392 0.60 +1.0 5,254,692 + Psyr_4392 0.60 +0.3 5,254,692 + Psyr_4392 0.60 -0.3 5,254,692 + Psyr_4392 0.60 -0.3 5,254,692 + Psyr_4392 0.60 +1.6 5,254,692 + Psyr_4392 0.60 -0.4 5,254,693 - Psyr_4392 0.60 -0.2 5,254,693 - Psyr_4392 0.60 -0.5 5,254,693 - Psyr_4392 0.60 +1.1 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 +0.3 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 +0.3 5,254,693 - Psyr_4392 0.60 -0.1 5,254,693 - Psyr_4392 0.60 +0.4 5,254,693 - Psyr_4392 0.60 -0.2 5,254,693 - Psyr_4392 0.60 -0.2 5,254,693 - Psyr_4392 0.60 +0.5 5,254,693 - Psyr_4392 0.60 -0.1 5,254,694 + Psyr_4392 0.60 +1.4 5,254,694 + Psyr_4392 0.60 +1.4 5,254,694 + Psyr_4392 0.60 +1.8 5,254,694 + Psyr_4392 0.60 +0.0 5,254,694 + Psyr_4392 0.60 +0.3 5,254,694 + Psyr_4392 0.60 +0.6 5,254,694 + Psyr_4392 0.60 +2.3 5,254,695 - Psyr_4392 0.60 -0.4 5,254,695 - Psyr_4392 0.60 +1.1 5,254,695 - Psyr_4392 0.60 +0.4 5,254,695 - Psyr_4392 0.60 +1.0 5,254,748 - Psyr_4392 0.65 -0.2 5,254,748 - Psyr_4392 0.65 +0.3 5,254,748 - Psyr_4392 0.65 -1.7 5,254,809 + Psyr_4392 0.70 -0.2 5,254,810 - Psyr_4392 0.70 -0.7 5,255,249 + +0.3 5,255,249 + +1.2 5,255,250 - -1.1 5,255,250 - +0.2 5,255,250 - +0.0 5,255,250 - +1.6 5,255,342 + Psyr_4393 0.14 -1.7 5,255,343 - Psyr_4393 0.14 -0.1 5,256,078 + Psyr_4393 0.73 +0.6 5,256,078 + Psyr_4393 0.73 -0.7 5,256,078 + Psyr_4393 0.73 -1.3 5,256,078 + Psyr_4393 0.73 +0.1 5,256,078 + Psyr_4393 0.73 +1.8 5,256,079 - Psyr_4393 0.73 +0.7 5,256,079 - Psyr_4393 0.73 -1.3 5,256,079 - Psyr_4393 0.73 -0.0 5,256,118 + Psyr_4393 0.76 -0.3
Or see this region's nucleotide sequence