Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4320 and Psyr_4321 are separated by 160 nucleotides Psyr_4321 and Psyr_4322 overlap by 26 nucleotides
Psyr_4320: Psyr_4320 - ATP-dependent helicase HrpB, at 5,170,887 to 5,173,421
_4320
Psyr_4321: Psyr_4321 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit, at 5,173,582 to 5,174,484
_4321
Psyr_4322: Psyr_4322 - membrane protein, putative, at 5,174,459 to 5,175,679
_4322
Position (kb) 5173
5174
5175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5172.584 kb on + strand, within Psyr_4320 at 5172.584 kb on + strand, within Psyr_4320 at 5172.585 kb on - strand, within Psyr_4320 at 5173.299 kb on + strand at 5173.300 kb on - strand at 5173.319 kb on + strand at 5173.320 kb on - strand at 5173.404 kb on + strand at 5173.405 kb on - strand at 5173.405 kb on - strand at 5173.405 kb on - strand at 5173.449 kb on + strand at 5173.449 kb on + strand at 5173.449 kb on + strand at 5173.450 kb on - strand at 5173.450 kb on - strand at 5173.450 kb on - strand at 5173.450 kb on - strand at 5173.450 kb on - strand at 5173.450 kb on - strand at 5173.482 kb on + strand at 5173.498 kb on + strand at 5173.551 kb on + strand at 5173.552 kb on - strand at 5173.552 kb on - strand at 5173.563 kb on + strand at 5173.569 kb on + strand at 5173.569 kb on + strand at 5173.569 kb on + strand at 5173.569 kb on + strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.570 kb on - strand at 5173.573 kb on + strand at 5173.573 kb on + strand at 5173.573 kb on + strand at 5173.573 kb on + strand at 5173.574 kb on - strand at 5173.574 kb on - strand at 5173.574 kb on - strand at 5173.583 kb on + strand at 5173.594 kb on + strand at 5173.594 kb on + strand at 5173.594 kb on + strand at 5173.595 kb on - strand at 5173.595 kb on - strand at 5173.595 kb on - strand at 5173.595 kb on - strand at 5173.595 kb on - strand at 5173.595 kb on - strand at 5173.612 kb on + strand at 5173.613 kb on - strand at 5173.671 kb on - strand at 5173.737 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.751 kb on + strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.752 kb on - strand, within Psyr_4321 at 5173.796 kb on + strand, within Psyr_4321 at 5173.797 kb on - strand, within Psyr_4321 at 5173.807 kb on + strand, within Psyr_4321 at 5173.808 kb on - strand, within Psyr_4321 at 5173.920 kb on + strand, within Psyr_4321 at 5173.920 kb on + strand, within Psyr_4321 at 5173.920 kb on + strand, within Psyr_4321 at 5173.920 kb on + strand, within Psyr_4321 at 5173.920 kb on + strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.921 kb on - strand, within Psyr_4321 at 5173.924 kb on + strand, within Psyr_4321 at 5173.924 kb on + strand, within Psyr_4321 at 5173.924 kb on + strand, within Psyr_4321 at 5173.924 kb on + strand, within Psyr_4321 at 5173.924 kb on + strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.925 kb on - strand, within Psyr_4321 at 5173.956 kb on + strand, within Psyr_4321 at 5173.956 kb on + strand, within Psyr_4321 at 5173.957 kb on - strand, within Psyr_4321 at 5173.959 kb on + strand, within Psyr_4321 at 5173.993 kb on + strand, within Psyr_4321 at 5173.993 kb on + strand, within Psyr_4321 at 5173.996 kb on - strand, within Psyr_4321 at 5174.029 kb on + strand, within Psyr_4321 at 5174.067 kb on - strand, within Psyr_4321 at 5174.091 kb on + strand, within Psyr_4321 at 5174.104 kb on - strand, within Psyr_4321 at 5174.105 kb on + strand, within Psyr_4321 at 5174.106 kb on - strand, within Psyr_4321 at 5174.109 kb on - strand, within Psyr_4321 at 5174.187 kb on + strand, within Psyr_4321 at 5174.188 kb on - strand, within Psyr_4321 at 5174.244 kb on + strand, within Psyr_4321 at 5174.277 kb on + strand, within Psyr_4321 at 5174.278 kb on - strand, within Psyr_4321 at 5174.300 kb on - strand, within Psyr_4321 at 5174.300 kb on - strand, within Psyr_4321 at 5174.338 kb on + strand at 5174.339 kb on - strand, within Psyr_4321 at 5174.339 kb on - strand, within Psyr_4321 at 5174.343 kb on + strand, within Psyr_4321 at 5174.343 kb on + strand, within Psyr_4321 at 5174.344 kb on - strand, within Psyr_4321 at 5174.347 kb on + strand, within Psyr_4321 at 5174.347 kb on + strand, within Psyr_4321 at 5174.347 kb on + strand, within Psyr_4321 at 5174.348 kb on - strand, within Psyr_4321 at 5174.392 kb on + strand, within Psyr_4321 at 5174.393 kb on - strand, within Psyr_4321 at 5174.408 kb on + strand at 5174.540 kb on + strand at 5174.540 kb on + strand at 5174.541 kb on - strand at 5174.541 kb on - strand at 5174.541 kb on - strand at 5174.576 kb on - strand at 5174.598 kb on - strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.736 kb on + strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.737 kb on - strand, within Psyr_4322 at 5174.741 kb on + strand, within Psyr_4322 at 5174.741 kb on + strand, within Psyr_4322 at 5174.741 kb on + strand, within Psyr_4322 at 5174.741 kb on + strand, within Psyr_4322 at 5174.742 kb on - strand, within Psyr_4322 at 5174.742 kb on - strand, within Psyr_4322 at 5174.742 kb on - strand, within Psyr_4322 at 5174.810 kb on + strand, within Psyr_4322 at 5174.810 kb on + strand, within Psyr_4322 at 5174.811 kb on - strand, within Psyr_4322 at 5174.867 kb on + strand, within Psyr_4322 at 5174.868 kb on - strand, within Psyr_4322 at 5174.879 kb on - strand, within Psyr_4322 at 5175.021 kb on - strand, within Psyr_4322 at 5175.021 kb on - strand, within Psyr_4322 at 5175.037 kb on + strand, within Psyr_4322 at 5175.037 kb on + strand, within Psyr_4322 at 5175.037 kb on + strand, within Psyr_4322 at 5175.037 kb on + strand, within Psyr_4322 at 5175.038 kb on - strand, within Psyr_4322 at 5175.038 kb on - strand, within Psyr_4322 at 5175.101 kb on + strand, within Psyr_4322 at 5175.102 kb on - strand, within Psyr_4322 at 5175.102 kb on - strand, within Psyr_4322 at 5175.102 kb on - strand, within Psyr_4322 at 5175.150 kb on - strand, within Psyr_4322 at 5175.150 kb on - strand, within Psyr_4322 at 5175.150 kb on - strand, within Psyr_4322 at 5175.152 kb on + strand, within Psyr_4322 at 5175.152 kb on + strand, within Psyr_4322 at 5175.152 kb on + strand, within Psyr_4322 at 5175.153 kb on - strand, within Psyr_4322 at 5175.153 kb on - strand, within Psyr_4322 at 5175.153 kb on - strand, within Psyr_4322 at 5175.153 kb on - strand, within Psyr_4322 at 5175.191 kb on + strand, within Psyr_4322 at 5175.192 kb on - strand, within Psyr_4322 at 5175.198 kb on + strand, within Psyr_4322 at 5175.266 kb on + strand, within Psyr_4322 at 5175.350 kb on - strand, within Psyr_4322 at 5175.351 kb on + strand, within Psyr_4322 at 5175.351 kb on + strand, within Psyr_4322 at 5175.351 kb on + strand, within Psyr_4322 at 5175.351 kb on + strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.352 kb on - strand, within Psyr_4322 at 5175.443 kb on + strand, within Psyr_4322 at 5175.443 kb on + strand, within Psyr_4322 at 5175.444 kb on - strand, within Psyr_4322 at 5175.444 kb on - strand, within Psyr_4322
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,172,584 + Psyr_4320 0.67 -0.8 5,172,584 + Psyr_4320 0.67 +0.4 5,172,585 - Psyr_4320 0.67 +0.1 5,173,299 + +1.4 5,173,300 - -1.0 5,173,319 + -0.5 5,173,320 - +0.6 5,173,404 + -0.2 5,173,405 - -0.3 5,173,405 - -0.5 5,173,405 - +0.6 5,173,449 + -0.9 5,173,449 + -2.0 5,173,449 + -0.1 5,173,450 - -0.2 5,173,450 - -1.2 5,173,450 - -1.8 5,173,450 - -0.7 5,173,450 - -0.4 5,173,450 - -0.9 5,173,482 + -1.9 5,173,498 + -0.9 5,173,551 + +0.8 5,173,552 - -0.3 5,173,552 - +2.2 5,173,563 + +0.0 5,173,569 + +0.8 5,173,569 + -0.6 5,173,569 + +0.2 5,173,569 + +0.4 5,173,570 - -0.1 5,173,570 - +1.0 5,173,570 - +0.6 5,173,570 - -0.3 5,173,570 - +0.4 5,173,570 - +1.5 5,173,570 - -0.7 5,173,573 + -0.6 5,173,573 + +0.2 5,173,573 + +1.4 5,173,573 + -3.5 5,173,574 - +1.1 5,173,574 - -2.3 5,173,574 - -0.5 5,173,583 + -0.2 5,173,594 + -0.3 5,173,594 + -0.5 5,173,594 + +0.8 5,173,595 - -0.1 5,173,595 - -0.1 5,173,595 - -1.0 5,173,595 - -1.2 5,173,595 - +1.0 5,173,595 - +0.4 5,173,612 + -0.6 5,173,613 - -0.0 5,173,671 - -1.1 5,173,737 + Psyr_4321 0.17 +0.0 5,173,751 + Psyr_4321 0.19 -0.4 5,173,751 + Psyr_4321 0.19 -1.8 5,173,751 + Psyr_4321 0.19 -0.8 5,173,751 + Psyr_4321 0.19 -1.0 5,173,751 + Psyr_4321 0.19 -0.0 5,173,751 + Psyr_4321 0.19 -1.7 5,173,751 + Psyr_4321 0.19 +1.8 5,173,752 - Psyr_4321 0.19 +0.4 5,173,752 - Psyr_4321 0.19 +0.8 5,173,752 - Psyr_4321 0.19 -0.8 5,173,752 - Psyr_4321 0.19 -0.6 5,173,752 - Psyr_4321 0.19 +0.5 5,173,752 - Psyr_4321 0.19 +0.7 5,173,752 - Psyr_4321 0.19 -1.2 5,173,796 + Psyr_4321 0.24 -0.5 5,173,797 - Psyr_4321 0.24 -0.3 5,173,807 + Psyr_4321 0.25 +0.1 5,173,808 - Psyr_4321 0.25 +0.2 5,173,920 + Psyr_4321 0.37 -2.0 5,173,920 + Psyr_4321 0.37 -4.0 5,173,920 + Psyr_4321 0.37 -0.2 5,173,920 + Psyr_4321 0.37 -0.8 5,173,920 + Psyr_4321 0.37 +0.6 5,173,921 - Psyr_4321 0.38 -0.2 5,173,921 - Psyr_4321 0.38 +0.1 5,173,921 - Psyr_4321 0.38 -0.8 5,173,921 - Psyr_4321 0.38 +0.1 5,173,921 - Psyr_4321 0.38 +0.5 5,173,921 - Psyr_4321 0.38 +1.6 5,173,921 - Psyr_4321 0.38 -0.6 5,173,921 - Psyr_4321 0.38 -3.0 5,173,921 - Psyr_4321 0.38 -1.0 5,173,921 - Psyr_4321 0.38 +0.1 5,173,924 + Psyr_4321 0.38 -3.1 5,173,924 + Psyr_4321 0.38 -0.6 5,173,924 + Psyr_4321 0.38 +0.2 5,173,924 + Psyr_4321 0.38 -0.6 5,173,924 + Psyr_4321 0.38 +0.2 5,173,925 - Psyr_4321 0.38 +0.1 5,173,925 - Psyr_4321 0.38 -0.8 5,173,925 - Psyr_4321 0.38 +0.8 5,173,925 - Psyr_4321 0.38 -0.6 5,173,925 - Psyr_4321 0.38 -0.5 5,173,925 - Psyr_4321 0.38 +0.1 5,173,925 - Psyr_4321 0.38 +1.8 5,173,925 - Psyr_4321 0.38 -0.4 5,173,956 + Psyr_4321 0.41 +0.6 5,173,956 + Psyr_4321 0.41 +0.7 5,173,957 - Psyr_4321 0.42 -0.4 5,173,959 + Psyr_4321 0.42 -3.1 5,173,993 + Psyr_4321 0.46 -1.4 5,173,993 + Psyr_4321 0.46 -2.6 5,173,996 - Psyr_4321 0.46 -0.1 5,174,029 + Psyr_4321 0.50 -0.6 5,174,067 - Psyr_4321 0.54 -1.4 5,174,091 + Psyr_4321 0.56 -0.9 5,174,104 - Psyr_4321 0.58 -0.6 5,174,105 + Psyr_4321 0.58 -0.0 5,174,106 - Psyr_4321 0.58 -0.2 5,174,109 - Psyr_4321 0.58 -0.6 5,174,187 + Psyr_4321 0.67 -0.4 5,174,188 - Psyr_4321 0.67 -0.3 5,174,244 + Psyr_4321 0.73 -2.2 5,174,277 + Psyr_4321 0.77 +0.3 5,174,278 - Psyr_4321 0.77 -1.8 5,174,300 - Psyr_4321 0.80 -0.2 5,174,300 - Psyr_4321 0.80 +1.1 5,174,338 + +2.1 5,174,339 - Psyr_4321 0.84 -0.2 5,174,339 - Psyr_4321 0.84 -1.3 5,174,343 + Psyr_4321 0.84 +0.4 5,174,343 + Psyr_4321 0.84 +0.3 5,174,344 - Psyr_4321 0.84 +0.4 5,174,347 + Psyr_4321 0.85 +0.9 5,174,347 + Psyr_4321 0.85 -2.6 5,174,347 + Psyr_4321 0.85 +0.0 5,174,348 - Psyr_4321 0.85 +0.6 5,174,392 + Psyr_4321 0.90 -0.0 5,174,393 - Psyr_4321 0.90 -1.4 5,174,408 + -1.6 5,174,540 + +0.3 5,174,540 + -0.4 5,174,541 - +1.1 5,174,541 - +0.7 5,174,541 - +0.5 5,174,576 - -0.2 5,174,598 - Psyr_4322 0.11 +0.1 5,174,736 + Psyr_4322 0.23 -1.6 5,174,736 + Psyr_4322 0.23 -0.2 5,174,736 + Psyr_4322 0.23 -0.7 5,174,736 + Psyr_4322 0.23 +1.8 5,174,736 + Psyr_4322 0.23 +1.1 5,174,736 + Psyr_4322 0.23 -0.4 5,174,736 + Psyr_4322 0.23 +0.9 5,174,736 + Psyr_4322 0.23 +0.3 5,174,736 + Psyr_4322 0.23 +1.1 5,174,736 + Psyr_4322 0.23 -0.3 5,174,736 + Psyr_4322 0.23 -1.3 5,174,736 + Psyr_4322 0.23 +4.0 5,174,736 + Psyr_4322 0.23 +0.2 5,174,736 + Psyr_4322 0.23 +0.7 5,174,736 + Psyr_4322 0.23 +1.3 5,174,736 + Psyr_4322 0.23 +0.2 5,174,736 + Psyr_4322 0.23 +0.9 5,174,736 + Psyr_4322 0.23 +0.5 5,174,736 + Psyr_4322 0.23 -1.8 5,174,736 + Psyr_4322 0.23 -0.9 5,174,736 + Psyr_4322 0.23 -0.1 5,174,737 - Psyr_4322 0.23 -0.9 5,174,737 - Psyr_4322 0.23 +0.3 5,174,737 - Psyr_4322 0.23 -0.5 5,174,737 - Psyr_4322 0.23 +0.8 5,174,737 - Psyr_4322 0.23 +0.3 5,174,737 - Psyr_4322 0.23 -0.0 5,174,737 - Psyr_4322 0.23 +0.5 5,174,737 - Psyr_4322 0.23 +1.4 5,174,737 - Psyr_4322 0.23 -0.8 5,174,737 - Psyr_4322 0.23 -1.1 5,174,737 - Psyr_4322 0.23 -0.6 5,174,737 - Psyr_4322 0.23 -0.2 5,174,737 - Psyr_4322 0.23 +0.5 5,174,741 + Psyr_4322 0.23 -2.1 5,174,741 + Psyr_4322 0.23 -1.4 5,174,741 + Psyr_4322 0.23 -2.3 5,174,741 + Psyr_4322 0.23 -0.4 5,174,742 - Psyr_4322 0.23 -0.5 5,174,742 - Psyr_4322 0.23 -0.4 5,174,742 - Psyr_4322 0.23 +0.4 5,174,810 + Psyr_4322 0.29 -0.1 5,174,810 + Psyr_4322 0.29 -0.3 5,174,811 - Psyr_4322 0.29 -0.0 5,174,867 + Psyr_4322 0.33 -1.2 5,174,868 - Psyr_4322 0.33 -1.0 5,174,879 - Psyr_4322 0.34 -2.3 5,175,021 - Psyr_4322 0.46 +0.4 5,175,021 - Psyr_4322 0.46 -0.3 5,175,037 + Psyr_4322 0.47 -1.0 5,175,037 + Psyr_4322 0.47 +0.4 5,175,037 + Psyr_4322 0.47 +1.1 5,175,037 + Psyr_4322 0.47 -0.3 5,175,038 - Psyr_4322 0.47 -0.8 5,175,038 - Psyr_4322 0.47 +1.5 5,175,101 + Psyr_4322 0.53 -2.0 5,175,102 - Psyr_4322 0.53 -0.3 5,175,102 - Psyr_4322 0.53 +0.8 5,175,102 - Psyr_4322 0.53 +0.3 5,175,150 - Psyr_4322 0.57 +2.7 5,175,150 - Psyr_4322 0.57 +0.9 5,175,150 - Psyr_4322 0.57 +0.6 5,175,152 + Psyr_4322 0.57 +1.0 5,175,152 + Psyr_4322 0.57 +0.4 5,175,152 + Psyr_4322 0.57 -0.5 5,175,153 - Psyr_4322 0.57 -0.1 5,175,153 - Psyr_4322 0.57 -1.5 5,175,153 - Psyr_4322 0.57 +0.0 5,175,153 - Psyr_4322 0.57 -2.1 5,175,191 + Psyr_4322 0.60 +1.4 5,175,192 - Psyr_4322 0.60 -1.2 5,175,198 + Psyr_4322 0.61 -0.1 5,175,266 + Psyr_4322 0.66 +0.7 5,175,350 - Psyr_4322 0.73 +1.4 5,175,351 + Psyr_4322 0.73 -1.2 5,175,351 + Psyr_4322 0.73 +2.4 5,175,351 + Psyr_4322 0.73 +0.8 5,175,351 + Psyr_4322 0.73 -0.3 5,175,352 - Psyr_4322 0.73 +1.0 5,175,352 - Psyr_4322 0.73 -1.3 5,175,352 - Psyr_4322 0.73 -0.5 5,175,352 - Psyr_4322 0.73 -1.3 5,175,352 - Psyr_4322 0.73 -0.6 5,175,352 - Psyr_4322 0.73 -2.5 5,175,443 + Psyr_4322 0.81 +0.5 5,175,443 + Psyr_4322 0.81 +1.8 5,175,444 - Psyr_4322 0.81 +1.0 5,175,444 - Psyr_4322 0.81 -0.7
Or see this region's nucleotide sequence