Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4268 and Psyr_4269 are separated by 69 nucleotides Psyr_4269 and Psyr_4270 are separated by 344 nucleotides
Psyr_4268: Psyr_4268 - Amidase, at 5,089,512 to 5,090,963
_4268
Psyr_4269: Psyr_4269 - type III effector HopAE1, at 5,091,033 to 5,093,777
_4269
Psyr_4270: Psyr_4270 - serine hydroxymethyltransferase, at 5,094,122 to 5,095,375
_4270
Position (kb) 5091
5092
5093
5094 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5090.315 kb on - strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.475 kb on + strand, within Psyr_4268 at 5090.583 kb on + strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.646 kb on + strand, within Psyr_4268 at 5090.817 kb on + strand, within Psyr_4268 at 5091.034 kb on + strand at 5091.035 kb on - strand at 5091.035 kb on - strand at 5091.100 kb on + strand at 5091.101 kb on - strand at 5091.193 kb on + strand at 5091.194 kb on - strand at 5091.194 kb on - strand at 5091.259 kb on + strand at 5091.507 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.620 kb on - strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.728 kb on - strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.943 kb on - strand, within Psyr_4269 at 5092.069 kb on + strand, within Psyr_4269 at 5092.181 kb on - strand, within Psyr_4269 at 5092.182 kb on - strand, within Psyr_4269 at 5092.523 kb on + strand, within Psyr_4269 at 5092.670 kb on + strand, within Psyr_4269 at 5092.671 kb on - strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.971 kb on + strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5093.206 kb on + strand, within Psyr_4269 at 5093.206 kb on + strand, within Psyr_4269 at 5093.207 kb on - strand, within Psyr_4269 at 5093.670 kb on - strand at 5093.787 kb on - strand at 5093.790 kb on + strand at 5093.790 kb on + strand at 5093.790 kb on + strand at 5093.791 kb on - strand at 5093.862 kb on + strand at 5094.056 kb on + strand at 5094.056 kb on + strand at 5094.057 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.085 kb on + strand at 5094.086 kb on - strand at 5094.152 kb on + strand at 5094.153 kb on - strand at 5094.233 kb on + strand at 5094.234 kb on - strand at 5094.234 kb on - strand at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.296 kb on + strand, within Psyr_4270 at 5094.297 kb on - strand, within Psyr_4270 at 5094.314 kb on + strand, within Psyr_4270 at 5094.315 kb on - strand, within Psyr_4270 at 5094.315 kb on - strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.330 kb on - strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.650 kb on + strand, within Psyr_4270 at 5094.707 kb on + strand, within Psyr_4270 at 5094.708 kb on - strand, within Psyr_4270
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,090,315 - Psyr_4268 0.55 -1.0 5,090,391 + Psyr_4268 0.61 -0.3 5,090,391 + Psyr_4268 0.61 +1.2 5,090,391 + Psyr_4268 0.61 -0.9 5,090,391 + Psyr_4268 0.61 -0.1 5,090,391 + Psyr_4268 0.61 +0.2 5,090,392 - Psyr_4268 0.61 -1.0 5,090,392 - Psyr_4268 0.61 +0.2 5,090,392 - Psyr_4268 0.61 -0.3 5,090,475 + Psyr_4268 0.66 -1.9 5,090,583 + Psyr_4268 0.74 -0.8 5,090,584 - Psyr_4268 0.74 -1.3 5,090,584 - Psyr_4268 0.74 -1.7 5,090,584 - Psyr_4268 0.74 -0.0 5,090,646 + Psyr_4268 0.78 +0.9 5,090,817 + Psyr_4268 0.90 -1.3 5,091,034 + +0.0 5,091,035 - +0.3 5,091,035 - +0.3 5,091,100 + -2.1 5,091,101 - -0.2 5,091,193 + +1.3 5,091,194 - -0.0 5,091,194 - +0.1 5,091,259 + +1.6 5,091,507 + Psyr_4269 0.17 -1.1 5,091,619 + Psyr_4269 0.21 -0.5 5,091,619 + Psyr_4269 0.21 +0.1 5,091,619 + Psyr_4269 0.21 -0.6 5,091,620 - Psyr_4269 0.21 +0.5 5,091,727 + Psyr_4269 0.25 -1.3 5,091,727 + Psyr_4269 0.25 -0.9 5,091,727 + Psyr_4269 0.25 -0.5 5,091,728 - Psyr_4269 0.25 -0.6 5,091,775 + Psyr_4269 0.27 -0.5 5,091,775 + Psyr_4269 0.27 +0.2 5,091,776 - Psyr_4269 0.27 +1.4 5,091,776 - Psyr_4269 0.27 +1.6 5,091,943 - Psyr_4269 0.33 -0.1 5,092,069 + Psyr_4269 0.38 -0.2 5,092,181 - Psyr_4269 0.42 -0.9 5,092,182 - Psyr_4269 0.42 -0.4 5,092,523 + Psyr_4269 0.54 -0.0 5,092,670 + Psyr_4269 0.60 -0.8 5,092,671 - Psyr_4269 0.60 -0.8 5,092,816 + Psyr_4269 0.65 -0.7 5,092,816 + Psyr_4269 0.65 -0.1 5,092,816 + Psyr_4269 0.65 -0.2 5,092,971 + Psyr_4269 0.71 +0.1 5,092,972 - Psyr_4269 0.71 +0.5 5,092,972 - Psyr_4269 0.71 +0.5 5,092,972 - Psyr_4269 0.71 -0.3 5,093,206 + Psyr_4269 0.79 +0.8 5,093,206 + Psyr_4269 0.79 -0.3 5,093,207 - Psyr_4269 0.79 -0.8 5,093,670 - +0.0 5,093,787 - -1.2 5,093,790 + -0.2 5,093,790 + +0.3 5,093,790 + +0.2 5,093,791 - +0.3 5,093,862 + +2.2 5,094,056 + +0.4 5,094,056 + +0.4 5,094,057 - -0.1 5,094,066 - -0.1 5,094,066 - +1.2 5,094,066 - -0.5 5,094,066 - +1.1 5,094,085 + +0.1 5,094,086 - +0.1 5,094,152 + +1.8 5,094,153 - +1.2 5,094,233 + +0.6 5,094,234 - +0.3 5,094,234 - -1.0 5,094,284 + Psyr_4270 0.13 -0.8 5,094,284 + Psyr_4270 0.13 +0.4 5,094,284 + Psyr_4270 0.13 +0.5 5,094,284 + Psyr_4270 0.13 -0.2 5,094,285 - Psyr_4270 0.13 +0.6 5,094,285 - Psyr_4270 0.13 -0.6 5,094,285 - Psyr_4270 0.13 -0.6 5,094,285 - Psyr_4270 0.13 -0.6 5,094,285 - Psyr_4270 0.13 -0.5 5,094,296 + Psyr_4270 0.14 +0.2 5,094,297 - Psyr_4270 0.14 -0.7 5,094,314 + Psyr_4270 0.15 -0.3 5,094,315 - Psyr_4270 0.15 -0.1 5,094,315 - Psyr_4270 0.15 +0.1 5,094,329 + Psyr_4270 0.17 +0.8 5,094,329 + Psyr_4270 0.17 -2.5 5,094,329 + Psyr_4270 0.17 +1.2 5,094,329 + Psyr_4270 0.17 -0.3 5,094,329 + Psyr_4270 0.17 +0.4 5,094,330 - Psyr_4270 0.17 -2.3 5,094,539 + Psyr_4270 0.33 +1.2 5,094,539 + Psyr_4270 0.33 -0.8 5,094,539 + Psyr_4270 0.33 -1.3 5,094,540 - Psyr_4270 0.33 +1.4 5,094,540 - Psyr_4270 0.33 +0.1 5,094,540 - Psyr_4270 0.33 -1.0 5,094,650 + Psyr_4270 0.42 +0.4 5,094,707 + Psyr_4270 0.47 +0.6 5,094,708 - Psyr_4270 0.47 +1.2
Or see this region's nucleotide sequence