Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4267 and Psyr_4268 are separated by 47 nucleotides Psyr_4268 and Psyr_4269 are separated by 69 nucleotides
Psyr_4267: Psyr_4267 - conserved hypothetical protein, at 5,088,571 to 5,089,464
_4267
Psyr_4268: Psyr_4268 - Amidase, at 5,089,512 to 5,090,963
_4268
Psyr_4269: Psyr_4269 - type III effector HopAE1, at 5,091,033 to 5,093,777
_4269
Position (kb) 5089
5090
5091 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5088.512 kb on + strand at 5088.512 kb on + strand at 5088.513 kb on - strand at 5088.525 kb on - strand at 5088.537 kb on - strand at 5088.537 kb on - strand at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.797 kb on - strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.153 kb on - strand, within Psyr_4267 at 5089.154 kb on + strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.198 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.393 kb on + strand at 5089.394 kb on - strand at 5089.394 kb on - strand at 5089.429 kb on + strand at 5089.430 kb on - strand at 5089.430 kb on - strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.463 kb on - strand at 5089.463 kb on - strand at 5089.531 kb on + strand at 5089.538 kb on + strand at 5089.669 kb on - strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.903 kb on - strand, within Psyr_4268 at 5090.315 kb on - strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.475 kb on + strand, within Psyr_4268 at 5090.583 kb on + strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.646 kb on + strand, within Psyr_4268 at 5090.817 kb on + strand, within Psyr_4268 at 5091.034 kb on + strand at 5091.035 kb on - strand at 5091.035 kb on - strand at 5091.100 kb on + strand at 5091.101 kb on - strand at 5091.193 kb on + strand at 5091.194 kb on - strand at 5091.194 kb on - strand at 5091.259 kb on + strand at 5091.507 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.620 kb on - strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.728 kb on - strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.943 kb on - strand, within Psyr_4269
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,088,512 + -0.3 5,088,512 + +0.8 5,088,513 - +0.7 5,088,525 - +0.5 5,088,537 - +1.5 5,088,537 - -0.7 5,088,712 + Psyr_4267 0.16 -0.0 5,088,712 + Psyr_4267 0.16 -0.5 5,088,712 + Psyr_4267 0.16 +0.5 5,088,797 - Psyr_4267 0.25 +0.5 5,089,010 + Psyr_4267 0.49 -1.2 5,089,010 + Psyr_4267 0.49 +1.2 5,089,010 + Psyr_4267 0.49 -0.3 5,089,010 + Psyr_4267 0.49 +0.5 5,089,011 - Psyr_4267 0.49 -0.1 5,089,011 - Psyr_4267 0.49 +0.3 5,089,105 + Psyr_4267 0.60 +0.1 5,089,105 + Psyr_4267 0.60 +1.2 5,089,105 + Psyr_4267 0.60 -0.2 5,089,105 + Psyr_4267 0.60 -0.5 5,089,105 + Psyr_4267 0.60 +0.4 5,089,105 + Psyr_4267 0.60 -0.8 5,089,106 - Psyr_4267 0.60 +0.6 5,089,106 - Psyr_4267 0.60 -0.4 5,089,106 - Psyr_4267 0.60 -0.4 5,089,153 - Psyr_4267 0.65 +0.2 5,089,154 + Psyr_4267 0.65 +0.6 5,089,155 - Psyr_4267 0.65 +0.2 5,089,155 - Psyr_4267 0.65 -0.8 5,089,155 - Psyr_4267 0.65 -0.3 5,089,155 - Psyr_4267 0.65 +0.6 5,089,155 - Psyr_4267 0.65 +0.3 5,089,198 + Psyr_4267 0.70 -1.1 5,089,261 + Psyr_4267 0.77 -0.6 5,089,261 + Psyr_4267 0.77 -0.3 5,089,261 + Psyr_4267 0.77 -1.4 5,089,262 - Psyr_4267 0.77 +0.6 5,089,262 - Psyr_4267 0.77 -0.1 5,089,262 - Psyr_4267 0.77 +1.7 5,089,262 - Psyr_4267 0.77 -1.6 5,089,262 - Psyr_4267 0.77 -1.3 5,089,348 + Psyr_4267 0.87 -0.9 5,089,348 + Psyr_4267 0.87 +2.1 5,089,348 + Psyr_4267 0.87 +0.2 5,089,349 - Psyr_4267 0.87 -0.8 5,089,349 - Psyr_4267 0.87 +1.1 5,089,393 + +0.7 5,089,394 - -1.0 5,089,394 - -0.5 5,089,429 + -2.2 5,089,430 - -0.1 5,089,430 - -0.1 5,089,462 + +0.8 5,089,462 + +1.0 5,089,462 + -0.6 5,089,462 + -0.5 5,089,463 - -0.3 5,089,463 - +1.3 5,089,531 + +0.1 5,089,538 + -0.2 5,089,669 - Psyr_4268 0.11 +0.0 5,089,902 + Psyr_4268 0.27 -0.4 5,089,902 + Psyr_4268 0.27 +0.3 5,089,903 - Psyr_4268 0.27 +0.3 5,090,315 - Psyr_4268 0.55 -1.0 5,090,391 + Psyr_4268 0.61 -0.3 5,090,391 + Psyr_4268 0.61 +1.2 5,090,391 + Psyr_4268 0.61 -0.9 5,090,391 + Psyr_4268 0.61 -0.1 5,090,391 + Psyr_4268 0.61 +0.2 5,090,392 - Psyr_4268 0.61 -1.0 5,090,392 - Psyr_4268 0.61 +0.2 5,090,392 - Psyr_4268 0.61 -0.3 5,090,475 + Psyr_4268 0.66 -1.9 5,090,583 + Psyr_4268 0.74 -0.8 5,090,584 - Psyr_4268 0.74 -1.3 5,090,584 - Psyr_4268 0.74 -1.7 5,090,584 - Psyr_4268 0.74 -0.0 5,090,646 + Psyr_4268 0.78 +0.9 5,090,817 + Psyr_4268 0.90 -1.3 5,091,034 + +0.0 5,091,035 - +0.3 5,091,035 - +0.3 5,091,100 + -2.1 5,091,101 - -0.2 5,091,193 + +1.3 5,091,194 - -0.0 5,091,194 - +0.1 5,091,259 + +1.6 5,091,507 + Psyr_4269 0.17 -1.1 5,091,619 + Psyr_4269 0.21 -0.5 5,091,619 + Psyr_4269 0.21 +0.1 5,091,619 + Psyr_4269 0.21 -0.6 5,091,620 - Psyr_4269 0.21 +0.5 5,091,727 + Psyr_4269 0.25 -1.3 5,091,727 + Psyr_4269 0.25 -0.9 5,091,727 + Psyr_4269 0.25 -0.5 5,091,728 - Psyr_4269 0.25 -0.6 5,091,775 + Psyr_4269 0.27 -0.5 5,091,775 + Psyr_4269 0.27 +0.2 5,091,776 - Psyr_4269 0.27 +1.4 5,091,776 - Psyr_4269 0.27 +1.6 5,091,943 - Psyr_4269 0.33 -0.1
Or see this region's nucleotide sequence