Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4197

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4195 and Psyr_4196 are separated by 111 nucleotidesPsyr_4196 and Psyr_4197 are separated by 270 nucleotidesPsyr_4197 and Psyr_4198 are separated by 44 nucleotidesPsyr_4198 and Psyr_4199 are separated by 98 nucleotides Psyr_4195: Psyr_4195 - Heat shock protein Hsp70, at 4,990,702 to 4,992,618 _4195 Psyr_4196: Psyr_4196 - GrpE protein, at 4,992,730 to 4,993,293 _4196 Psyr_4197: Psyr_4197 - DNA replication and repair protein RecN, at 4,993,564 to 4,995,237 _4197 Psyr_4198: Psyr_4198 - Ferric-uptake regulator, at 4,995,282 to 4,995,689 _4198 Psyr_4199: Psyr_4199 - SmpA/OmlA, at 4,995,788 to 4,996,309 _4199 Position (kb) 4993 4994 4995 4996Strain fitness (log2 ratio) -2 -1 0 1 2at 4992.720 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.347 kb on - strandat 4993.394 kb on - strandat 4993.394 kb on - strandat 4993.411 kb on + strandat 4993.411 kb on + strandat 4993.411 kb on + strandat 4993.411 kb on + strandat 4993.411 kb on + strandat 4993.411 kb on + strandat 4993.412 kb on - strandat 4993.412 kb on - strandat 4993.412 kb on - strandat 4993.591 kb on + strandat 4993.591 kb on + strandat 4993.592 kb on - strandat 4993.592 kb on - strandat 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.879 kb on + strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4993.880 kb on - strand, within Psyr_4197at 4994.129 kb on + strand, within Psyr_4197at 4994.130 kb on - strand, within Psyr_4197at 4994.130 kb on - strand, within Psyr_4197at 4994.137 kb on + strand, within Psyr_4197at 4994.387 kb on + strand, within Psyr_4197at 4994.387 kb on + strand, within Psyr_4197at 4994.387 kb on + strand, within Psyr_4197at 4994.388 kb on - strand, within Psyr_4197at 4994.393 kb on + strand, within Psyr_4197at 4994.393 kb on + strand, within Psyr_4197at 4994.393 kb on + strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.394 kb on - strand, within Psyr_4197at 4994.488 kb on + strand, within Psyr_4197at 4994.488 kb on + strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.489 kb on - strand, within Psyr_4197at 4994.561 kb on + strand, within Psyr_4197at 4994.561 kb on + strand, within Psyr_4197at 4994.561 kb on + strand, within Psyr_4197at 4994.633 kb on - strand, within Psyr_4197at 4994.771 kb on + strand, within Psyr_4197at 4994.771 kb on + strand, within Psyr_4197at 4994.771 kb on + strand, within Psyr_4197at 4994.771 kb on + strand, within Psyr_4197at 4994.772 kb on - strand, within Psyr_4197at 4994.772 kb on - strand, within Psyr_4197at 4994.807 kb on + strand, within Psyr_4197at 4994.807 kb on + strand, within Psyr_4197at 4994.807 kb on + strand, within Psyr_4197at 4994.808 kb on - strand, within Psyr_4197at 4994.937 kb on - strand, within Psyr_4197at 4994.937 kb on - strand, within Psyr_4197at 4994.984 kb on + strand, within Psyr_4197at 4995.144 kb on + strandat 4995.144 kb on + strandat 4995.144 kb on + strandat 4995.144 kb on + strandat 4995.144 kb on + strandat 4995.144 kb on + strandat 4995.145 kb on - strandat 4995.145 kb on - strandat 4995.145 kb on - strandat 4995.145 kb on - strandat 4995.145 kb on - strandat 4995.145 kb on - strandat 4995.147 kb on - strandat 4995.147 kb on - strandat 4995.243 kb on - strandat 4995.243 kb on - strandat 4995.243 kb on - strandat 4995.243 kb on - strandat 4995.283 kb on + strandat 4995.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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4,992,720 - -1.2
4,993,347 - -1.2
4,993,347 - -1.1
4,993,347 - +1.3
4,993,347 - +0.9
4,993,347 - +1.9
4,993,347 - -0.7
4,993,347 - +0.5
4,993,347 - -0.4
4,993,394 - +0.1
4,993,394 - -1.3
4,993,411 + +0.6
4,993,411 + +0.5
4,993,411 + -0.5
4,993,411 + +0.6
4,993,411 + -1.1
4,993,411 + +1.0
4,993,412 - -0.5
4,993,412 - +0.4
4,993,412 - +0.3
4,993,591 + -0.2
4,993,591 + +0.6
4,993,592 - +1.3
4,993,592 - -0.3
4,993,879 + Psyr_4197 0.19 +1.6
4,993,879 + Psyr_4197 0.19 +0.2
4,993,879 + Psyr_4197 0.19 +0.0
4,993,879 + Psyr_4197 0.19 -0.5
4,993,879 + Psyr_4197 0.19 +0.8
4,993,879 + Psyr_4197 0.19 -0.3
4,993,879 + Psyr_4197 0.19 +1.0
4,993,879 + Psyr_4197 0.19 -1.0
4,993,879 + Psyr_4197 0.19 +0.8
4,993,879 + Psyr_4197 0.19 +1.3
4,993,879 + Psyr_4197 0.19 +1.4
4,993,880 - Psyr_4197 0.19 -0.9
4,993,880 - Psyr_4197 0.19 +0.0
4,993,880 - Psyr_4197 0.19 +0.5
4,993,880 - Psyr_4197 0.19 +0.7
4,993,880 - Psyr_4197 0.19 +0.8
4,993,880 - Psyr_4197 0.19 +0.1
4,994,129 + Psyr_4197 0.34 +1.8
4,994,130 - Psyr_4197 0.34 +0.1
4,994,130 - Psyr_4197 0.34 -0.3
4,994,137 + Psyr_4197 0.34 -0.1
4,994,387 + Psyr_4197 0.49 +1.4
4,994,387 + Psyr_4197 0.49 +0.0
4,994,387 + Psyr_4197 0.49 +0.0
4,994,388 - Psyr_4197 0.49 -0.1
4,994,393 + Psyr_4197 0.50 -1.2
4,994,393 + Psyr_4197 0.50 +0.1
4,994,393 + Psyr_4197 0.50 +1.3
4,994,394 - Psyr_4197 0.50 -0.1
4,994,394 - Psyr_4197 0.50 +0.7
4,994,394 - Psyr_4197 0.50 +0.8
4,994,394 - Psyr_4197 0.50 +0.5
4,994,394 - Psyr_4197 0.50 -1.6
4,994,394 - Psyr_4197 0.50 +1.0
4,994,488 + Psyr_4197 0.55 +1.1
4,994,488 + Psyr_4197 0.55 +0.3
4,994,489 - Psyr_4197 0.55 -0.3
4,994,489 - Psyr_4197 0.55 +0.1
4,994,489 - Psyr_4197 0.55 +2.6
4,994,489 - Psyr_4197 0.55 +0.3
4,994,489 - Psyr_4197 0.55 +1.8
4,994,489 - Psyr_4197 0.55 -0.2
4,994,561 + Psyr_4197 0.60 -0.8
4,994,561 + Psyr_4197 0.60 +0.5
4,994,561 + Psyr_4197 0.60 -1.2
4,994,633 - Psyr_4197 0.64 +1.5
4,994,771 + Psyr_4197 0.72 +1.8
4,994,771 + Psyr_4197 0.72 +0.7
4,994,771 + Psyr_4197 0.72 +0.8
4,994,771 + Psyr_4197 0.72 +0.6
4,994,772 - Psyr_4197 0.72 +0.7
4,994,772 - Psyr_4197 0.72 -2.2
4,994,807 + Psyr_4197 0.74 +0.5
4,994,807 + Psyr_4197 0.74 +0.2
4,994,807 + Psyr_4197 0.74 +0.2
4,994,808 - Psyr_4197 0.74 -0.2
4,994,937 - Psyr_4197 0.82 +1.6
4,994,937 - Psyr_4197 0.82 +0.4
4,994,984 + Psyr_4197 0.85 -1.2
4,995,144 + -1.2
4,995,144 + -0.8
4,995,144 + -0.0
4,995,144 + -0.3
4,995,144 + +1.4
4,995,144 + +0.1
4,995,145 - -1.6
4,995,145 - -0.8
4,995,145 - -0.2
4,995,145 - -0.5
4,995,145 - +1.4
4,995,145 - +0.2
4,995,147 - -0.8
4,995,147 - +0.2
4,995,243 - -1.3
4,995,243 - -0.8
4,995,243 - -0.9
4,995,243 - -1.0
4,995,283 + -0.2
4,995,284 - +0.0

Or see this region's nucleotide sequence