Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4092

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4091 and Psyr_4092 are separated by 2 nucleotidesPsyr_4092 and Psyr_4093 are separated by 57 nucleotides Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431 _4091 Psyr_4092: Psyr_4092 - Glutathione S-transferase, N-terminal, at 4,878,434 to 4,879,060 _4092 Psyr_4093: Psyr_4093 - glutamate N-acetyltransferase, at 4,879,118 to 4,880,335 _4093 Position (kb) 4878 4879 4880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4877.788 kb on + strand, within Psyr_4091at 4877.788 kb on + strand, within Psyr_4091at 4877.788 kb on + strand, within Psyr_4091at 4877.789 kb on - strand, within Psyr_4091at 4877.789 kb on - strand, within Psyr_4091at 4877.789 kb on - strand, within Psyr_4091at 4877.920 kb on + strand, within Psyr_4091at 4877.921 kb on - strand, within Psyr_4091at 4877.933 kb on - strand, within Psyr_4091at 4878.037 kb on + strand, within Psyr_4091at 4878.094 kb on + strand, within Psyr_4091at 4878.094 kb on + strand, within Psyr_4091at 4878.094 kb on + strand, within Psyr_4091at 4878.094 kb on + strand, within Psyr_4091at 4878.094 kb on + strand, within Psyr_4091at 4878.095 kb on - strand, within Psyr_4091at 4878.095 kb on - strand, within Psyr_4091at 4878.378 kb on + strandat 4878.486 kb on + strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.487 kb on - strandat 4878.501 kb on + strand, within Psyr_4092at 4878.501 kb on + strand, within Psyr_4092at 4878.502 kb on - strand, within Psyr_4092at 4878.502 kb on - strand, within Psyr_4092at 4878.502 kb on - strand, within Psyr_4092at 4878.502 kb on - strand, within Psyr_4092at 4878.502 kb on - strand, within Psyr_4092at 4878.535 kb on - strand, within Psyr_4092at 4878.725 kb on - strand, within Psyr_4092at 4878.840 kb on + strand, within Psyr_4092at 4878.841 kb on - strand, within Psyr_4092at 4878.841 kb on - strand, within Psyr_4092at 4878.915 kb on + strand, within Psyr_4092at 4878.915 kb on + strand, within Psyr_4092at 4878.915 kb on + strand, within Psyr_4092at 4878.916 kb on - strand, within Psyr_4092at 4878.916 kb on - strand, within Psyr_4092at 4879.026 kb on + strandat 4879.027 kb on - strandat 4879.149 kb on + strandat 4879.149 kb on + strandat 4879.149 kb on + strandat 4879.149 kb on + strandat 4879.263 kb on + strand, within Psyr_4093at 4879.263 kb on + strand, within Psyr_4093at 4879.263 kb on + strand, within Psyr_4093at 4879.263 kb on + strand, within Psyr_4093at 4879.264 kb on - strand, within Psyr_4093at 4879.264 kb on - strand, within Psyr_4093at 4879.298 kb on + strand, within Psyr_4093at 4879.298 kb on + strand, within Psyr_4093at 4879.313 kb on + strand, within Psyr_4093at 4879.313 kb on + strand, within Psyr_4093at 4879.314 kb on - strand, within Psyr_4093at 4879.372 kb on + strand, within Psyr_4093at 4879.373 kb on - strand, within Psyr_4093at 4879.373 kb on - strand, within Psyr_4093at 4879.759 kb on - strand, within Psyr_4093at 4880.053 kb on + strand, within Psyr_4093at 4880.054 kb on - strand, within Psyr_4093

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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4,877,788 + Psyr_4091 0.32 -3.7
4,877,788 + Psyr_4091 0.32 -1.2
4,877,788 + Psyr_4091 0.32 -2.9
4,877,789 - Psyr_4091 0.32 +0.8
4,877,789 - Psyr_4091 0.32 -1.2
4,877,789 - Psyr_4091 0.32 +1.8
4,877,920 + Psyr_4091 0.46 -2.8
4,877,921 - Psyr_4091 0.46 -3.1
4,877,933 - Psyr_4091 0.48 -2.7
4,878,037 + Psyr_4091 0.58 -2.0
4,878,094 + Psyr_4091 0.64 -0.8
4,878,094 + Psyr_4091 0.64 -1.9
4,878,094 + Psyr_4091 0.64 -2.2
4,878,094 + Psyr_4091 0.64 -2.7
4,878,094 + Psyr_4091 0.64 -3.1
4,878,095 - Psyr_4091 0.65 +0.6
4,878,095 - Psyr_4091 0.65 +0.3
4,878,378 + -0.6
4,878,486 + +1.2
4,878,487 - -0.3
4,878,487 - +0.4
4,878,487 - +0.9
4,878,487 - -0.0
4,878,487 - +1.1
4,878,487 - +0.8
4,878,487 - +0.8
4,878,487 - -0.0
4,878,487 - +0.1
4,878,501 + Psyr_4092 0.11 -0.9
4,878,501 + Psyr_4092 0.11 +0.6
4,878,502 - Psyr_4092 0.11 +3.6
4,878,502 - Psyr_4092 0.11 +0.0
4,878,502 - Psyr_4092 0.11 +2.4
4,878,502 - Psyr_4092 0.11 -0.2
4,878,502 - Psyr_4092 0.11 +0.3
4,878,535 - Psyr_4092 0.16 +0.0
4,878,725 - Psyr_4092 0.46 -2.4
4,878,840 + Psyr_4092 0.65 -0.7
4,878,841 - Psyr_4092 0.65 -0.7
4,878,841 - Psyr_4092 0.65 -0.5
4,878,915 + Psyr_4092 0.77 -1.3
4,878,915 + Psyr_4092 0.77 -0.8
4,878,915 + Psyr_4092 0.77 -0.7
4,878,916 - Psyr_4092 0.77 -0.4
4,878,916 - Psyr_4092 0.77 -0.6
4,879,026 + -1.9
4,879,027 - -1.3
4,879,149 + -0.4
4,879,149 + +0.8
4,879,149 + +0.3
4,879,149 + -0.8
4,879,263 + Psyr_4093 0.12 +0.6
4,879,263 + Psyr_4093 0.12 -0.6
4,879,263 + Psyr_4093 0.12 -2.7
4,879,263 + Psyr_4093 0.12 +0.4
4,879,264 - Psyr_4093 0.12 +0.3
4,879,264 - Psyr_4093 0.12 -2.6
4,879,298 + Psyr_4093 0.15 -1.5
4,879,298 + Psyr_4093 0.15 +1.1
4,879,313 + Psyr_4093 0.16 -1.2
4,879,313 + Psyr_4093 0.16 +0.5
4,879,314 - Psyr_4093 0.16 -0.1
4,879,372 + Psyr_4093 0.21 +1.2
4,879,373 - Psyr_4093 0.21 +1.0
4,879,373 - Psyr_4093 0.21 +0.3
4,879,759 - Psyr_4093 0.53 -0.7
4,880,053 + Psyr_4093 0.77 -1.8
4,880,054 - Psyr_4093 0.77 -2.4

Or see this region's nucleotide sequence