Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4040 and Psyr_4041 overlap by 4 nucleotides Psyr_4041 and Psyr_4042 are separated by 28 nucleotides Psyr_4042 and Psyr_4043 are separated by 570 nucleotides Psyr_4043 and Psyr_4044 are separated by 40 nucleotides
Psyr_4040: Psyr_4040 - putative cytoplasmic protein, at 4,826,081 to 4,826,584
_4040
Psyr_4041: Psyr_4041 - hypothetical protein, at 4,826,581 to 4,827,015
_4041
Psyr_4042: Psyr_4042 - hypothetical protein, at 4,827,044 to 4,827,484
_4042
Psyr_4043: Psyr_4043 - hypothetical protein, at 4,828,055 to 4,828,288
_4043
Psyr_4044: Psyr_4044 - Phospholipase D/Transphosphatidylase, at 4,828,329 to 4,829,486
_4044
Position (kb) 4827
4828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4826.050 kb on + strand at 4826.125 kb on + strand at 4826.125 kb on + strand at 4826.125 kb on + strand at 4826.125 kb on + strand at 4826.125 kb on + strand at 4826.125 kb on + strand at 4826.126 kb on - strand at 4826.126 kb on - strand at 4826.126 kb on - strand at 4826.126 kb on - strand at 4826.126 kb on - strand at 4826.130 kb on - strand at 4826.130 kb on - strand at 4826.130 kb on - strand at 4826.193 kb on + strand, within Psyr_4040 at 4826.193 kb on + strand, within Psyr_4040 at 4826.193 kb on + strand, within Psyr_4040 at 4826.194 kb on - strand, within Psyr_4040 at 4826.194 kb on - strand, within Psyr_4040 at 4826.194 kb on - strand, within Psyr_4040 at 4826.250 kb on - strand, within Psyr_4040 at 4826.250 kb on - strand, within Psyr_4040 at 4826.281 kb on + strand, within Psyr_4040 at 4826.281 kb on + strand, within Psyr_4040 at 4826.281 kb on + strand, within Psyr_4040 at 4826.286 kb on + strand, within Psyr_4040 at 4826.291 kb on - strand, within Psyr_4040 at 4826.393 kb on + strand, within Psyr_4040 at 4826.393 kb on + strand, within Psyr_4040 at 4826.394 kb on - strand, within Psyr_4040 at 4826.394 kb on - strand, within Psyr_4040 at 4826.437 kb on + strand, within Psyr_4040 at 4826.438 kb on - strand, within Psyr_4040 at 4826.443 kb on - strand, within Psyr_4040 at 4826.543 kb on + strand at 4826.543 kb on + strand at 4826.575 kb on - strand at 4826.646 kb on + strand, within Psyr_4041 at 4826.646 kb on + strand, within Psyr_4041 at 4826.646 kb on + strand, within Psyr_4041 at 4826.647 kb on - strand, within Psyr_4041 at 4826.647 kb on - strand, within Psyr_4041 at 4826.721 kb on + strand, within Psyr_4041 at 4826.721 kb on + strand, within Psyr_4041 at 4826.722 kb on - strand, within Psyr_4041 at 4826.724 kb on - strand, within Psyr_4041 at 4826.747 kb on + strand, within Psyr_4041 at 4826.748 kb on - strand, within Psyr_4041 at 4826.803 kb on + strand, within Psyr_4041 at 4826.851 kb on + strand, within Psyr_4041 at 4826.851 kb on + strand, within Psyr_4041 at 4826.851 kb on + strand, within Psyr_4041 at 4826.851 kb on + strand, within Psyr_4041 at 4826.851 kb on + strand, within Psyr_4041 at 4826.852 kb on - strand, within Psyr_4041 at 4826.867 kb on - strand, within Psyr_4041 at 4826.868 kb on + strand, within Psyr_4041 at 4826.868 kb on + strand, within Psyr_4041 at 4826.868 kb on + strand, within Psyr_4041 at 4826.904 kb on - strand, within Psyr_4041 at 4826.919 kb on - strand, within Psyr_4041 at 4826.979 kb on - strand at 4826.995 kb on + strand at 4826.995 kb on + strand at 4827.007 kb on + strand at 4827.008 kb on - strand at 4827.041 kb on - strand at 4827.067 kb on + strand at 4827.078 kb on + strand at 4827.107 kb on + strand, within Psyr_4042 at 4827.108 kb on - strand, within Psyr_4042 at 4827.108 kb on - strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.197 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.200 kb on - strand, within Psyr_4042 at 4827.203 kb on + strand, within Psyr_4042 at 4827.203 kb on + strand, within Psyr_4042 at 4827.210 kb on + strand, within Psyr_4042 at 4827.211 kb on - strand, within Psyr_4042 at 4827.250 kb on - strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.266 kb on + strand, within Psyr_4042 at 4827.267 kb on - strand, within Psyr_4042 at 4827.267 kb on - strand, within Psyr_4042 at 4827.314 kb on + strand, within Psyr_4042 at 4827.366 kb on + strand, within Psyr_4042 at 4827.367 kb on - strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.454 kb on + strand at 4827.454 kb on + strand at 4827.455 kb on - strand at 4827.458 kb on + strand at 4827.458 kb on + strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.483 kb on - strand at 4827.531 kb on + strand at 4827.531 kb on + strand at 4827.532 kb on - strand at 4827.540 kb on + strand at 4827.540 kb on + strand at 4827.563 kb on + strand at 4827.563 kb on + strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.685 kb on + strand at 4827.735 kb on + strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.857 kb on - strand at 4827.857 kb on - strand at 4827.976 kb on - strand at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.165 kb on + strand, within Psyr_4043 at 4828.175 kb on + strand, within Psyr_4043 at 4828.176 kb on - strand, within Psyr_4043 at 4828.334 kb on + strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 4,826,050 + +1.3 4,826,125 + -1.3 4,826,125 + +0.5 4,826,125 + -0.8 4,826,125 + +0.3 4,826,125 + -0.6 4,826,125 + -1.0 4,826,126 - +0.5 4,826,126 - +0.1 4,826,126 - +0.1 4,826,126 - -0.0 4,826,126 - -0.0 4,826,130 - -0.2 4,826,130 - -1.0 4,826,130 - -0.0 4,826,193 + Psyr_4040 0.22 +1.4 4,826,193 + Psyr_4040 0.22 +1.4 4,826,193 + Psyr_4040 0.22 -0.2 4,826,194 - Psyr_4040 0.22 +0.4 4,826,194 - Psyr_4040 0.22 -0.8 4,826,194 - Psyr_4040 0.22 +0.1 4,826,250 - Psyr_4040 0.34 -0.6 4,826,250 - Psyr_4040 0.34 -0.7 4,826,281 + Psyr_4040 0.40 +1.1 4,826,281 + Psyr_4040 0.40 -0.0 4,826,281 + Psyr_4040 0.40 +1.1 4,826,286 + Psyr_4040 0.41 -0.1 4,826,291 - Psyr_4040 0.42 -2.4 4,826,393 + Psyr_4040 0.62 -1.8 4,826,393 + Psyr_4040 0.62 +1.6 4,826,394 - Psyr_4040 0.62 +1.4 4,826,394 - Psyr_4040 0.62 -0.2 4,826,437 + Psyr_4040 0.71 -0.8 4,826,438 - Psyr_4040 0.71 +0.1 4,826,443 - Psyr_4040 0.72 -0.7 4,826,543 + +0.1 4,826,543 + -0.2 4,826,575 - +0.9 4,826,646 + Psyr_4041 0.15 +0.1 4,826,646 + Psyr_4041 0.15 -0.2 4,826,646 + Psyr_4041 0.15 -0.6 4,826,647 - Psyr_4041 0.15 +0.8 4,826,647 - Psyr_4041 0.15 +1.1 4,826,721 + Psyr_4041 0.32 -0.4 4,826,721 + Psyr_4041 0.32 +0.4 4,826,722 - Psyr_4041 0.32 +2.6 4,826,724 - Psyr_4041 0.33 +2.1 4,826,747 + Psyr_4041 0.38 +2.0 4,826,748 - Psyr_4041 0.38 +0.6 4,826,803 + Psyr_4041 0.51 +1.0 4,826,851 + Psyr_4041 0.62 +0.6 4,826,851 + Psyr_4041 0.62 -1.2 4,826,851 + Psyr_4041 0.62 -1.7 4,826,851 + Psyr_4041 0.62 -0.6 4,826,851 + Psyr_4041 0.62 +0.8 4,826,852 - Psyr_4041 0.62 +0.3 4,826,867 - Psyr_4041 0.66 +1.0 4,826,868 + Psyr_4041 0.66 +0.6 4,826,868 + Psyr_4041 0.66 +0.7 4,826,868 + Psyr_4041 0.66 +2.2 4,826,904 - Psyr_4041 0.74 -1.5 4,826,919 - Psyr_4041 0.78 -2.4 4,826,979 - -1.3 4,826,995 + +1.0 4,826,995 + +1.9 4,827,007 + -0.7 4,827,008 - -0.5 4,827,041 - -2.4 4,827,067 + -0.3 4,827,078 + +0.4 4,827,107 + Psyr_4042 0.14 +0.0 4,827,108 - Psyr_4042 0.15 -0.4 4,827,108 - Psyr_4042 0.15 -1.8 4,827,137 + Psyr_4042 0.21 +0.4 4,827,137 + Psyr_4042 0.21 +2.4 4,827,137 + Psyr_4042 0.21 -0.1 4,827,137 + Psyr_4042 0.21 +1.1 4,827,137 + Psyr_4042 0.21 -0.6 4,827,137 + Psyr_4042 0.21 -0.9 4,827,137 + Psyr_4042 0.21 -0.1 4,827,138 - Psyr_4042 0.21 +0.5 4,827,138 - Psyr_4042 0.21 -1.2 4,827,138 - Psyr_4042 0.21 -0.9 4,827,138 - Psyr_4042 0.21 -2.4 4,827,138 - Psyr_4042 0.21 +0.2 4,827,197 + Psyr_4042 0.35 -1.1 4,827,199 + Psyr_4042 0.35 +0.5 4,827,199 + Psyr_4042 0.35 -1.7 4,827,199 + Psyr_4042 0.35 +0.7 4,827,200 - Psyr_4042 0.35 +0.6 4,827,203 + Psyr_4042 0.36 +0.7 4,827,203 + Psyr_4042 0.36 +0.9 4,827,210 + Psyr_4042 0.38 +2.1 4,827,211 - Psyr_4042 0.38 -1.0 4,827,250 - Psyr_4042 0.47 -4.2 4,827,263 + Psyr_4042 0.50 +0.8 4,827,263 + Psyr_4042 0.50 +1.5 4,827,263 + Psyr_4042 0.50 -0.7 4,827,263 + Psyr_4042 0.50 -1.5 4,827,264 - Psyr_4042 0.50 -2.4 4,827,264 - Psyr_4042 0.50 -0.7 4,827,264 - Psyr_4042 0.50 -0.8 4,827,266 + Psyr_4042 0.50 -0.5 4,827,267 - Psyr_4042 0.51 -0.2 4,827,267 - Psyr_4042 0.51 -3.1 4,827,314 + Psyr_4042 0.61 -0.6 4,827,366 + Psyr_4042 0.73 -0.2 4,827,367 - Psyr_4042 0.73 -0.9 4,827,398 + Psyr_4042 0.80 +1.8 4,827,398 + Psyr_4042 0.80 +0.1 4,827,398 + Psyr_4042 0.80 +0.1 4,827,399 - Psyr_4042 0.80 +1.0 4,827,399 - Psyr_4042 0.80 -1.0 4,827,399 - Psyr_4042 0.80 -3.0 4,827,399 - Psyr_4042 0.80 +0.6 4,827,399 - Psyr_4042 0.80 +0.7 4,827,454 + -1.0 4,827,454 + +1.5 4,827,455 - -0.9 4,827,458 + -0.5 4,827,458 + -0.5 4,827,459 - -2.0 4,827,459 - -1.4 4,827,459 - +1.6 4,827,459 - +0.8 4,827,483 - +1.0 4,827,531 + -0.7 4,827,531 + -1.6 4,827,532 - -0.9 4,827,540 + -1.3 4,827,540 + +0.2 4,827,563 + -0.6 4,827,563 + -0.2 4,827,564 - +1.3 4,827,564 - +0.8 4,827,564 - +0.1 4,827,564 - +0.8 4,827,564 - +1.3 4,827,564 - +0.2 4,827,564 - +0.1 4,827,564 - +0.2 4,827,567 + -0.5 4,827,567 + +0.0 4,827,567 + -1.0 4,827,567 + +0.9 4,827,567 + +0.1 4,827,568 - -0.4 4,827,568 - -1.6 4,827,568 - -0.0 4,827,638 + +0.8 4,827,638 + +1.3 4,827,638 + -0.2 4,827,638 + +1.4 4,827,638 + -0.9 4,827,639 - -0.3 4,827,639 - -1.4 4,827,639 - +0.3 4,827,639 - +0.0 4,827,639 - -1.9 4,827,685 + +1.0 4,827,735 + +0.5 4,827,736 - -1.4 4,827,736 - -0.5 4,827,736 - -0.9 4,827,736 - +0.5 4,827,857 - +0.9 4,827,857 - +0.6 4,827,976 - +1.2 4,828,136 + Psyr_4043 0.35 +0.7 4,828,136 + Psyr_4043 0.35 +1.5 4,828,136 + Psyr_4043 0.35 -0.1 4,828,136 + Psyr_4043 0.35 +1.4 4,828,165 + Psyr_4043 0.47 -2.8 4,828,175 + Psyr_4043 0.51 +1.0 4,828,176 - Psyr_4043 0.52 +0.2 4,828,334 + +0.8 4,828,335 - +0.1 4,828,335 - -0.9 4,828,335 - -0.2 4,828,335 - -1.2 4,828,335 - +1.6
Or see this region's nucleotide sequence