Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3901 and Psyr_3902 overlap by 4 nucleotides Psyr_3902 and Psyr_3903 are separated by 8 nucleotides Psyr_3903 and Psyr_3904 are separated by 341 nucleotides
Psyr_3901: Psyr_3901 - ornithine carbamoyltransferase, at 4,642,209 to 4,643,129
_3901
Psyr_3902: Psyr_3902 - ABC transporter:TOBE, at 4,643,126 to 4,644,199
_3902
Psyr_3903: Psyr_3903 - Conserved hypothetical protein 11, at 4,644,208 to 4,644,678
_3903
Psyr_3904: Psyr_3904 - Major intrinsic protein, at 4,645,020 to 4,645,877
_3904
Position (kb) 4643
4644
4645 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4643.393 kb on + strand, within Psyr_3902 at 4643.401 kb on - strand, within Psyr_3902 at 4643.749 kb on - strand, within Psyr_3902 at 4643.749 kb on - strand, within Psyr_3902 at 4643.786 kb on + strand, within Psyr_3902 at 4643.786 kb on + strand, within Psyr_3902 at 4643.786 kb on + strand, within Psyr_3902 at 4643.787 kb on - strand, within Psyr_3902 at 4643.809 kb on + strand, within Psyr_3902 at 4643.843 kb on + strand, within Psyr_3902 at 4643.843 kb on + strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.898 kb on + strand, within Psyr_3902 at 4643.899 kb on - strand, within Psyr_3902 at 4643.899 kb on - strand, within Psyr_3902 at 4643.955 kb on + strand, within Psyr_3902 at 4643.955 kb on + strand, within Psyr_3902 at 4643.956 kb on - strand, within Psyr_3902 at 4643.956 kb on - strand, within Psyr_3902 at 4643.956 kb on - strand, within Psyr_3902 at 4644.042 kb on - strand, within Psyr_3902 at 4644.194 kb on - strand at 4644.194 kb on - strand at 4644.243 kb on + strand at 4644.243 kb on + strand at 4644.243 kb on + strand at 4644.243 kb on + strand at 4644.243 kb on + strand at 4644.244 kb on - strand at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.306 kb on - strand, within Psyr_3903 at 4644.306 kb on - strand, within Psyr_3903 at 4644.306 kb on - strand, within Psyr_3903 at 4644.306 kb on - strand, within Psyr_3903 at 4644.306 kb on - strand, within Psyr_3903 at 4644.378 kb on + strand, within Psyr_3903 at 4644.378 kb on + strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.508 kb on + strand, within Psyr_3903 at 4644.509 kb on - strand, within Psyr_3903 at 4644.509 kb on - strand, within Psyr_3903 at 4644.620 kb on + strand, within Psyr_3903 at 4644.724 kb on - strand at 4644.765 kb on - strand at 4644.797 kb on + strand at 4644.797 kb on + strand at 4644.798 kb on - strand at 4644.798 kb on - strand at 4644.870 kb on + strand at 4644.884 kb on + strand at 4644.884 kb on + strand at 4644.914 kb on - strand at 4644.915 kb on + strand at 4644.916 kb on - strand at 4644.916 kb on - strand at 4644.916 kb on - strand at 4645.015 kb on + strand at 4645.016 kb on - strand at 4645.197 kb on + strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 4,643,393 + Psyr_3902 0.25 -1.8 4,643,401 - Psyr_3902 0.26 -0.9 4,643,749 - Psyr_3902 0.58 -1.2 4,643,749 - Psyr_3902 0.58 -0.1 4,643,786 + Psyr_3902 0.61 -2.8 4,643,786 + Psyr_3902 0.61 -2.0 4,643,786 + Psyr_3902 0.61 -0.3 4,643,787 - Psyr_3902 0.62 -1.8 4,643,809 + Psyr_3902 0.64 +0.1 4,643,843 + Psyr_3902 0.67 -0.3 4,643,843 + Psyr_3902 0.67 -0.8 4,643,844 - Psyr_3902 0.67 -0.8 4,643,844 - Psyr_3902 0.67 -0.4 4,643,844 - Psyr_3902 0.67 +0.4 4,643,844 - Psyr_3902 0.67 -0.8 4,643,898 + Psyr_3902 0.72 -0.8 4,643,899 - Psyr_3902 0.72 -2.3 4,643,899 - Psyr_3902 0.72 -1.3 4,643,955 + Psyr_3902 0.77 -2.6 4,643,955 + Psyr_3902 0.77 +0.1 4,643,956 - Psyr_3902 0.77 +0.3 4,643,956 - Psyr_3902 0.77 -2.1 4,643,956 - Psyr_3902 0.77 -0.5 4,644,042 - Psyr_3902 0.85 -0.0 4,644,194 - +0.3 4,644,194 - +0.6 4,644,243 + -0.6 4,644,243 + -0.4 4,644,243 + -0.8 4,644,243 + -0.8 4,644,243 + -0.9 4,644,244 - +0.2 4,644,305 + Psyr_3903 0.21 -1.2 4,644,305 + Psyr_3903 0.21 +0.1 4,644,305 + Psyr_3903 0.21 -0.2 4,644,305 + Psyr_3903 0.21 -0.3 4,644,306 - Psyr_3903 0.21 +1.3 4,644,306 - Psyr_3903 0.21 +1.8 4,644,306 - Psyr_3903 0.21 -1.9 4,644,306 - Psyr_3903 0.21 +0.4 4,644,306 - Psyr_3903 0.21 -2.0 4,644,378 + Psyr_3903 0.36 +0.9 4,644,378 + Psyr_3903 0.36 -1.0 4,644,470 - Psyr_3903 0.56 -0.8 4,644,508 + Psyr_3903 0.64 -2.1 4,644,509 - Psyr_3903 0.64 -0.8 4,644,509 - Psyr_3903 0.64 +0.8 4,644,620 + Psyr_3903 0.87 -0.4 4,644,724 - -1.2 4,644,765 - -3.1 4,644,797 + +0.1 4,644,797 + -1.0 4,644,798 - -1.8 4,644,798 - -0.2 4,644,870 + -0.8 4,644,884 + +1.9 4,644,884 + -0.3 4,644,914 - +1.0 4,644,915 + +0.5 4,644,916 - -1.4 4,644,916 - +0.3 4,644,916 - -1.6 4,645,015 + -0.2 4,645,016 - +0.1 4,645,197 + Psyr_3904 0.21 +1.0 4,645,198 - Psyr_3904 0.21 -2.1 4,645,198 - Psyr_3904 0.21 -0.0 4,645,198 - Psyr_3904 0.21 +0.8
Or see this region's nucleotide sequence