Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3820

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3819 and Psyr_3820 are separated by 443 nucleotidesPsyr_3820 and Psyr_3821 are separated by 78 nucleotidesPsyr_3821 and Psyr_3822 are separated by 1 nucleotides Psyr_3819: Psyr_3819 - Protein of unknown function DUF1349, at 4,544,258 to 4,544,833 _3819 Psyr_3820: Psyr_3820 - conserved domain protein, at 4,545,277 to 4,545,822 _3820 Psyr_3821: Psyr_3821 - Short-chain dehydrogenase/reductase SDR, at 4,545,901 to 4,546,635 _3821 Psyr_3822: Psyr_3822 - Protein of unknown function DUF6, at 4,546,637 to 4,547,515 _3822 Position (kb) 4545 4546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4544.360 kb on + strand, within Psyr_3819at 4544.360 kb on + strand, within Psyr_3819at 4544.360 kb on + strand, within Psyr_3819at 4544.361 kb on - strand, within Psyr_3819at 4544.366 kb on - strand, within Psyr_3819at 4544.366 kb on - strand, within Psyr_3819at 4544.367 kb on + strand, within Psyr_3819at 4544.367 kb on + strand, within Psyr_3819at 4544.368 kb on - strand, within Psyr_3819at 4544.445 kb on - strand, within Psyr_3819at 4544.498 kb on + strand, within Psyr_3819at 4544.499 kb on - strand, within Psyr_3819at 4544.499 kb on - strand, within Psyr_3819at 4544.499 kb on - strand, within Psyr_3819at 4544.499 kb on - strand, within Psyr_3819at 4544.629 kb on - strand, within Psyr_3819at 4544.725 kb on - strand, within Psyr_3819at 4544.877 kb on + strandat 4544.877 kb on + strandat 4544.877 kb on + strandat 4544.877 kb on + strandat 4544.877 kb on + strandat 4544.878 kb on - strandat 4544.878 kb on - strandat 4544.878 kb on - strandat 4544.878 kb on - strandat 4544.878 kb on - strandat 4544.878 kb on - strandat 4544.885 kb on - strandat 4544.894 kb on + strandat 4544.894 kb on + strandat 4544.895 kb on - strandat 4544.908 kb on + strandat 4544.909 kb on - strandat 4544.962 kb on + strandat 4544.990 kb on - strandat 4545.092 kb on - strandat 4545.129 kb on + strandat 4545.140 kb on + strandat 4545.140 kb on + strandat 4545.140 kb on + strandat 4545.140 kb on + strandat 4545.141 kb on - strandat 4545.147 kb on + strandat 4545.147 kb on + strandat 4545.148 kb on - strandat 4545.553 kb on + strand, within Psyr_3820at 4545.553 kb on + strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4545.554 kb on - strand, within Psyr_3820at 4546.210 kb on + strand, within Psyr_3821at 4546.210 kb on + strand, within Psyr_3821at 4546.211 kb on - strand, within Psyr_3821at 4546.363 kb on + strand, within Psyr_3821at 4546.464 kb on - strand, within Psyr_3821at 4546.468 kb on - strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.588 kb on + strandat 4546.588 kb on + strandat 4546.589 kb on - strandat 4546.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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4,544,360 + Psyr_3819 0.18 +0.7
4,544,360 + Psyr_3819 0.18 +0.1
4,544,360 + Psyr_3819 0.18 +0.2
4,544,361 - Psyr_3819 0.18 +1.0
4,544,366 - Psyr_3819 0.19 -1.6
4,544,366 - Psyr_3819 0.19 -1.0
4,544,367 + Psyr_3819 0.19 +1.1
4,544,367 + Psyr_3819 0.19 -0.4
4,544,368 - Psyr_3819 0.19 -0.6
4,544,445 - Psyr_3819 0.32 +0.8
4,544,498 + Psyr_3819 0.42 +0.4
4,544,499 - Psyr_3819 0.42 +0.7
4,544,499 - Psyr_3819 0.42 -0.3
4,544,499 - Psyr_3819 0.42 -0.4
4,544,499 - Psyr_3819 0.42 -1.3
4,544,629 - Psyr_3819 0.64 +2.1
4,544,725 - Psyr_3819 0.81 -0.2
4,544,877 + -1.0
4,544,877 + -1.8
4,544,877 + -1.2
4,544,877 + -0.9
4,544,877 + -1.9
4,544,878 - +1.4
4,544,878 - +1.4
4,544,878 - +0.6
4,544,878 - -1.4
4,544,878 - -0.3
4,544,878 - +0.9
4,544,885 - +0.9
4,544,894 + -3.2
4,544,894 + +1.9
4,544,895 - +1.1
4,544,908 + -1.9
4,544,909 - +1.0
4,544,962 + -2.5
4,544,990 - -0.6
4,545,092 - +1.0
4,545,129 + -0.4
4,545,140 + -0.4
4,545,140 + +0.0
4,545,140 + +0.8
4,545,140 + -0.9
4,545,141 - +0.7
4,545,147 + +0.1
4,545,147 + -0.2
4,545,148 - +0.1
4,545,553 + Psyr_3820 0.51 +1.0
4,545,553 + Psyr_3820 0.51 -0.5
4,545,554 - Psyr_3820 0.51 +0.8
4,545,554 - Psyr_3820 0.51 +2.1
4,545,554 - Psyr_3820 0.51 -0.2
4,545,554 - Psyr_3820 0.51 +0.8
4,545,554 - Psyr_3820 0.51 +1.0
4,545,554 - Psyr_3820 0.51 -0.6
4,546,210 + Psyr_3821 0.42 -0.0
4,546,210 + Psyr_3821 0.42 +1.4
4,546,211 - Psyr_3821 0.42 +2.0
4,546,363 + Psyr_3821 0.63 +0.0
4,546,464 - Psyr_3821 0.77 -0.2
4,546,468 - Psyr_3821 0.77 +1.1
4,546,561 + Psyr_3821 0.90 -0.3
4,546,561 + Psyr_3821 0.90 -0.5
4,546,561 + Psyr_3821 0.90 +0.5
4,546,561 + Psyr_3821 0.90 -0.4
4,546,561 + Psyr_3821 0.90 +0.7
4,546,561 + Psyr_3821 0.90 +0.4
4,546,561 + Psyr_3821 0.90 -0.5
4,546,562 - +0.1
4,546,562 - +1.2
4,546,562 - -0.2
4,546,562 - +1.2
4,546,562 - -0.5
4,546,562 - -0.4
4,546,588 + -1.6
4,546,588 + +0.3
4,546,589 - +1.5
4,546,589 - +1.1

Or see this region's nucleotide sequence