Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3787

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3786 and Psyr_3787 are separated by 608 nucleotidesPsyr_3787 and Psyr_3788 are separated by 144 nucleotidesPsyr_3788 and Psyr_3789 are separated by 69 nucleotides Psyr_3786: Psyr_3786 - RNA binding S1, at 4,501,896 to 4,502,732 _3786 Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907 _3787 Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780 _3788 Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713 _3789 Position (kb) 4503 4504Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4502.375 kb on - strand, within Psyr_3786at 4502.392 kb on + strand, within Psyr_3786at 4502.392 kb on + strand, within Psyr_3786at 4502.428 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.469 kb on + strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.470 kb on - strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.572 kb on + strand, within Psyr_3786at 4502.573 kb on - strand, within Psyr_3786at 4502.573 kb on - strand, within Psyr_3786at 4502.626 kb on + strand, within Psyr_3786at 4502.627 kb on - strand, within Psyr_3786at 4502.671 kb on + strandat 4502.671 kb on + strandat 4502.714 kb on - strandat 4502.714 kb on - strandat 4502.714 kb on - strandat 4502.749 kb on + strandat 4502.749 kb on + strandat 4502.766 kb on - strandat 4502.813 kb on - strandat 4503.022 kb on + strandat 4503.022 kb on + strandat 4503.022 kb on + strandat 4503.023 kb on - strandat 4503.029 kb on - strandat 4503.029 kb on - strandat 4503.036 kb on + strandat 4503.036 kb on + strandat 4503.036 kb on + strandat 4503.036 kb on + strandat 4503.037 kb on - strandat 4503.037 kb on - strandat 4503.276 kb on + strandat 4503.319 kb on + strandat 4503.320 kb on - strandat 4503.340 kb on + strandat 4503.341 kb on - strandat 4503.341 kb on - strandat 4503.341 kb on - strandat 4503.429 kb on - strand, within Psyr_3787at 4503.429 kb on - strand, within Psyr_3787at 4503.575 kb on + strand, within Psyr_3787at 4503.576 kb on - strand, within Psyr_3787at 4503.641 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.652 kb on - strand, within Psyr_3787at 4503.800 kb on + strand, within Psyr_3787at 4503.801 kb on - strand, within Psyr_3787at 4503.970 kb on + strandat 4503.971 kb on - strandat 4504.069 kb on - strandat 4504.069 kb on - strandat 4504.069 kb on - strandat 4504.262 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.365 kb on - strand, within Psyr_3788at 4504.365 kb on - strand, within Psyr_3788at 4504.392 kb on - strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.715 kb on + strandat 4504.716 kb on - strandat 4504.757 kb on - strandat 4504.811 kb on - strandat 4504.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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4,502,375 - Psyr_3786 0.57 -0.2
4,502,392 + Psyr_3786 0.59 +2.1
4,502,392 + Psyr_3786 0.59 -1.7
4,502,428 + Psyr_3786 0.64 +0.1
4,502,469 + Psyr_3786 0.68 -1.5
4,502,469 + Psyr_3786 0.68 +0.1
4,502,469 + Psyr_3786 0.68 -0.9
4,502,470 - Psyr_3786 0.69 +1.5
4,502,470 - Psyr_3786 0.69 -0.0
4,502,470 - Psyr_3786 0.69 -3.0
4,502,470 - Psyr_3786 0.69 -0.9
4,502,572 + Psyr_3786 0.81 +2.7
4,502,572 + Psyr_3786 0.81 +0.7
4,502,572 + Psyr_3786 0.81 -0.3
4,502,572 + Psyr_3786 0.81 -0.3
4,502,573 - Psyr_3786 0.81 -0.3
4,502,573 - Psyr_3786 0.81 +1.6
4,502,626 + Psyr_3786 0.87 +0.3
4,502,627 - Psyr_3786 0.87 -1.5
4,502,671 + -0.7
4,502,671 + +0.3
4,502,714 - -0.7
4,502,714 - +2.7
4,502,714 - -0.3
4,502,749 + +0.0
4,502,749 + -0.1
4,502,766 - -1.5
4,502,813 - +1.4
4,503,022 + -0.2
4,503,022 + -0.7
4,503,022 + +0.7
4,503,023 - +1.7
4,503,029 - -2.2
4,503,029 - +1.2
4,503,036 + +1.0
4,503,036 + +0.3
4,503,036 + -0.6
4,503,036 + -2.1
4,503,037 - +0.3
4,503,037 - -0.8
4,503,276 + -2.1
4,503,319 + +0.7
4,503,320 - -0.3
4,503,340 + +0.7
4,503,341 - -0.2
4,503,341 - -2.1
4,503,341 - +0.7
4,503,429 - Psyr_3787 0.16 -0.7
4,503,429 - Psyr_3787 0.16 -0.0
4,503,575 + Psyr_3787 0.41 -0.9
4,503,576 - Psyr_3787 0.41 -1.5
4,503,641 + Psyr_3787 0.53 -0.0
4,503,651 + Psyr_3787 0.55 -2.6
4,503,652 - Psyr_3787 0.55 -1.6
4,503,800 + Psyr_3787 0.81 -0.3
4,503,801 - Psyr_3787 0.81 -0.1
4,503,970 + -0.0
4,503,971 - -1.9
4,504,069 - -1.9
4,504,069 - +0.3
4,504,069 - -1.1
4,504,262 + Psyr_3788 0.29 +0.9
4,504,325 + Psyr_3788 0.37 -1.0
4,504,325 + Psyr_3788 0.37 -1.2
4,504,325 + Psyr_3788 0.37 +0.7
4,504,325 + Psyr_3788 0.37 +2.2
4,504,325 + Psyr_3788 0.37 -0.1
4,504,325 + Psyr_3788 0.37 +0.1
4,504,325 + Psyr_3788 0.37 -0.7
4,504,325 + Psyr_3788 0.37 -2.6
4,504,326 - Psyr_3788 0.38 -1.9
4,504,326 - Psyr_3788 0.38 -0.7
4,504,326 - Psyr_3788 0.38 -1.3
4,504,326 - Psyr_3788 0.38 +0.7
4,504,326 - Psyr_3788 0.38 -1.0
4,504,365 - Psyr_3788 0.43 -0.9
4,504,365 - Psyr_3788 0.43 +1.5
4,504,392 - Psyr_3788 0.47 +1.0
4,504,427 + Psyr_3788 0.51 -0.1
4,504,427 + Psyr_3788 0.51 +1.0
4,504,427 + Psyr_3788 0.51 +1.3
4,504,427 + Psyr_3788 0.51 -0.4
4,504,427 + Psyr_3788 0.51 -1.0
4,504,428 - Psyr_3788 0.52 -0.9
4,504,428 - Psyr_3788 0.52 -1.1
4,504,428 - Psyr_3788 0.52 +1.7
4,504,428 - Psyr_3788 0.52 -0.9
4,504,428 - Psyr_3788 0.52 +0.3
4,504,428 - Psyr_3788 0.52 +0.4
4,504,428 - Psyr_3788 0.52 -2.6
4,504,676 + Psyr_3788 0.86 +0.4
4,504,676 + Psyr_3788 0.86 -1.3
4,504,676 + Psyr_3788 0.86 +0.8
4,504,676 + Psyr_3788 0.86 -2.4
4,504,676 + Psyr_3788 0.86 -0.6
4,504,676 + Psyr_3788 0.86 +0.3
4,504,676 + Psyr_3788 0.86 +0.6
4,504,676 + Psyr_3788 0.86 -1.2
4,504,676 + Psyr_3788 0.86 +0.3
4,504,676 + Psyr_3788 0.86 +0.7
4,504,676 + Psyr_3788 0.86 -0.1
4,504,676 + Psyr_3788 0.86 +1.0
4,504,676 + Psyr_3788 0.86 +0.1
4,504,676 + Psyr_3788 0.86 -1.1
4,504,677 - Psyr_3788 0.86 -0.0
4,504,677 - Psyr_3788 0.86 +0.5
4,504,677 - Psyr_3788 0.86 +1.1
4,504,677 - Psyr_3788 0.86 -1.3
4,504,677 - Psyr_3788 0.86 -1.6
4,504,677 - Psyr_3788 0.86 +0.3
4,504,677 - Psyr_3788 0.86 -1.3
4,504,715 + -0.9
4,504,716 - +2.1
4,504,757 - -1.2
4,504,811 - +0.4
4,504,860 + +3.3

Or see this region's nucleotide sequence