Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3779

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3778 and Psyr_3779 are separated by 86 nucleotidesPsyr_3779 and Psyr_3780 are separated by 24 nucleotidesPsyr_3780 and Psyr_3781 are separated by 50 nucleotides Psyr_3778: Psyr_3778 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,496,436 to 4,497,449 _3778 Psyr_3779: Psyr_3779 - GCN5-related N-acetyltransferase, at 4,497,536 to 4,497,982 _3779 Psyr_3780: Psyr_3780 - Formylmethionine deformylase, at 4,498,007 to 4,498,546 _3780 Psyr_3781: Psyr_3781 - Ribonuclease BN, at 4,498,597 to 4,499,562 _3781 Position (kb) 4497 4498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4496.770 kb on + strand, within Psyr_3778at 4496.770 kb on + strand, within Psyr_3778at 4496.771 kb on - strand, within Psyr_3778at 4496.771 kb on - strand, within Psyr_3778at 4496.800 kb on + strand, within Psyr_3778at 4496.800 kb on + strand, within Psyr_3778at 4496.803 kb on + strand, within Psyr_3778at 4496.803 kb on + strand, within Psyr_3778at 4496.803 kb on + strand, within Psyr_3778at 4496.803 kb on + strand, within Psyr_3778at 4496.804 kb on - strand, within Psyr_3778at 4496.804 kb on - strand, within Psyr_3778at 4496.804 kb on - strand, within Psyr_3778at 4496.996 kb on + strand, within Psyr_3778at 4497.084 kb on + strand, within Psyr_3778at 4497.085 kb on - strand, within Psyr_3778at 4497.085 kb on - strand, within Psyr_3778at 4497.085 kb on - strand, within Psyr_3778at 4497.085 kb on - strand, within Psyr_3778at 4497.085 kb on - strand, within Psyr_3778at 4497.089 kb on - strand, within Psyr_3778at 4497.089 kb on - strand, within Psyr_3778at 4497.251 kb on + strand, within Psyr_3778at 4497.359 kb on + strandat 4497.360 kb on - strandat 4497.511 kb on + strandat 4497.511 kb on + strandat 4497.512 kb on - strandat 4497.512 kb on - strandat 4497.535 kb on + strandat 4497.535 kb on + strandat 4497.535 kb on + strandat 4497.535 kb on + strandat 4497.535 kb on + strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.536 kb on - strandat 4497.552 kb on - strandat 4497.632 kb on + strand, within Psyr_3779at 4497.633 kb on - strand, within Psyr_3779at 4497.873 kb on - strand, within Psyr_3779at 4497.873 kb on - strand, within Psyr_3779at 4497.873 kb on - strand, within Psyr_3779at 4498.788 kb on + strand, within Psyr_3781at 4498.790 kb on + strand, within Psyr_3781at 4498.790 kb on + strand, within Psyr_3781at 4498.790 kb on + strand, within Psyr_3781at 4498.791 kb on - strand, within Psyr_3781at 4498.791 kb on - strand, within Psyr_3781at 4498.791 kb on - strand, within Psyr_3781at 4498.791 kb on - strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.796 kb on + strand, within Psyr_3781at 4498.797 kb on - strand, within Psyr_3781at 4498.797 kb on - strand, within Psyr_3781at 4498.797 kb on - strand, within Psyr_3781at 4498.797 kb on - strand, within Psyr_3781at 4498.833 kb on - strand, within Psyr_3781at 4498.833 kb on - strand, within Psyr_3781at 4498.844 kb on + strand, within Psyr_3781at 4498.845 kb on - strand, within Psyr_3781at 4498.845 kb on - strand, within Psyr_3781at 4498.845 kb on - strand, within Psyr_3781at 4498.866 kb on - strand, within Psyr_3781at 4498.964 kb on + strand, within Psyr_3781at 4498.964 kb on + strand, within Psyr_3781at 4498.964 kb on + strand, within Psyr_3781at 4498.964 kb on + strand, within Psyr_3781at 4498.964 kb on + strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.965 kb on - strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.967 kb on + strand, within Psyr_3781at 4498.968 kb on - strand, within Psyr_3781at 4498.968 kb on - strand, within Psyr_3781at 4498.968 kb on - strand, within Psyr_3781at 4498.968 kb on - strand, within Psyr_3781

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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4,496,770 + Psyr_3778 0.33 -0.4
4,496,770 + Psyr_3778 0.33 +1.9
4,496,771 - Psyr_3778 0.33 +1.5
4,496,771 - Psyr_3778 0.33 +0.2
4,496,800 + Psyr_3778 0.36 -1.2
4,496,800 + Psyr_3778 0.36 -0.8
4,496,803 + Psyr_3778 0.36 +1.4
4,496,803 + Psyr_3778 0.36 -0.7
4,496,803 + Psyr_3778 0.36 +0.4
4,496,803 + Psyr_3778 0.36 -0.3
4,496,804 - Psyr_3778 0.36 +2.3
4,496,804 - Psyr_3778 0.36 +0.6
4,496,804 - Psyr_3778 0.36 -1.2
4,496,996 + Psyr_3778 0.55 -0.8
4,497,084 + Psyr_3778 0.64 -2.4
4,497,085 - Psyr_3778 0.64 +1.5
4,497,085 - Psyr_3778 0.64 -0.6
4,497,085 - Psyr_3778 0.64 -0.6
4,497,085 - Psyr_3778 0.64 +0.0
4,497,085 - Psyr_3778 0.64 -0.1
4,497,089 - Psyr_3778 0.64 +0.5
4,497,089 - Psyr_3778 0.64 +0.2
4,497,251 + Psyr_3778 0.80 +0.3
4,497,359 + -0.5
4,497,360 - -1.0
4,497,511 + +1.3
4,497,511 + -3.2
4,497,512 - -1.1
4,497,512 - +0.3
4,497,535 + -0.8
4,497,535 + +1.0
4,497,535 + +0.0
4,497,535 + -0.4
4,497,535 + -1.6
4,497,536 - -0.2
4,497,536 - +0.7
4,497,536 - +0.1
4,497,536 - -0.8
4,497,536 - -0.2
4,497,536 - -0.8
4,497,536 - +0.2
4,497,536 - +1.7
4,497,536 - +0.2
4,497,536 - -0.2
4,497,552 - -2.4
4,497,632 + Psyr_3779 0.21 -0.7
4,497,633 - Psyr_3779 0.22 +1.5
4,497,873 - Psyr_3779 0.75 +1.0
4,497,873 - Psyr_3779 0.75 +1.6
4,497,873 - Psyr_3779 0.75 +0.7
4,498,788 + Psyr_3781 0.20 +0.7
4,498,790 + Psyr_3781 0.20 +0.7
4,498,790 + Psyr_3781 0.20 -0.8
4,498,790 + Psyr_3781 0.20 -1.1
4,498,791 - Psyr_3781 0.20 +0.1
4,498,791 - Psyr_3781 0.20 -0.6
4,498,791 - Psyr_3781 0.20 +0.1
4,498,791 - Psyr_3781 0.20 -0.4
4,498,796 + Psyr_3781 0.21 -0.7
4,498,796 + Psyr_3781 0.21 -0.3
4,498,796 + Psyr_3781 0.21 -0.3
4,498,796 + Psyr_3781 0.21 -1.1
4,498,796 + Psyr_3781 0.21 -0.1
4,498,796 + Psyr_3781 0.21 -1.3
4,498,796 + Psyr_3781 0.21 +1.2
4,498,797 - Psyr_3781 0.21 +1.7
4,498,797 - Psyr_3781 0.21 +0.3
4,498,797 - Psyr_3781 0.21 +1.1
4,498,797 - Psyr_3781 0.21 -0.1
4,498,833 - Psyr_3781 0.24 -0.8
4,498,833 - Psyr_3781 0.24 +1.6
4,498,844 + Psyr_3781 0.26 -0.1
4,498,845 - Psyr_3781 0.26 +0.1
4,498,845 - Psyr_3781 0.26 -0.4
4,498,845 - Psyr_3781 0.26 -0.5
4,498,866 - Psyr_3781 0.28 +2.1
4,498,964 + Psyr_3781 0.38 -0.3
4,498,964 + Psyr_3781 0.38 +0.4
4,498,964 + Psyr_3781 0.38 +0.7
4,498,964 + Psyr_3781 0.38 -0.1
4,498,964 + Psyr_3781 0.38 +1.0
4,498,965 - Psyr_3781 0.38 +0.0
4,498,965 - Psyr_3781 0.38 +0.1
4,498,965 - Psyr_3781 0.38 +0.8
4,498,965 - Psyr_3781 0.38 -0.3
4,498,965 - Psyr_3781 0.38 -1.1
4,498,965 - Psyr_3781 0.38 -0.6
4,498,967 + Psyr_3781 0.38 -0.6
4,498,967 + Psyr_3781 0.38 -1.3
4,498,967 + Psyr_3781 0.38 -0.1
4,498,967 + Psyr_3781 0.38 -1.3
4,498,967 + Psyr_3781 0.38 -3.0
4,498,967 + Psyr_3781 0.38 -0.5
4,498,968 - Psyr_3781 0.38 -0.4
4,498,968 - Psyr_3781 0.38 -0.6
4,498,968 - Psyr_3781 0.38 -0.7
4,498,968 - Psyr_3781 0.38 +0.7

Or see this region's nucleotide sequence