Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2926

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2924 and Psyr_2925 overlap by 8 nucleotidesPsyr_2925 and Psyr_2926 are separated by 76 nucleotidesPsyr_2926 and Psyr_2927 are separated by 110 nucleotidesPsyr_2927 and Psyr_2928 are separated by 79 nucleotides Psyr_2924: Psyr_2924 - conserved hypothetical protein, at 3,512,951 to 3,514,246 _2924 Psyr_2925: Psyr_2925 - Helix-turn-helix motif protein, at 3,514,239 to 3,514,583 _2925 Psyr_2926: Psyr_2926 - General substrate transporter:Major facilitator superfamily, at 3,514,660 to 3,515,865 _2926 Psyr_2927: Psyr_2927 - transcriptional regulator, TetR family, at 3,515,976 to 3,516,602 _2927 Psyr_2928: Psyr_2928 - ABC transporter, transmembrane region:ABC transporter, at 3,516,682 to 3,518,535 _2928 Position (kb) 3514 3515 3516Strain fitness (log2 ratio) -2 -1 0 1 2at 3513.682 kb on + strand, within Psyr_2924at 3513.806 kb on + strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.918 kb on + strand, within Psyr_2924at 3513.919 kb on - strand, within Psyr_2924at 3514.021 kb on - strand, within Psyr_2924at 3514.038 kb on + strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.096 kb on - strand, within Psyr_2924at 3514.221 kb on + strandat 3514.232 kb on - strandat 3514.291 kb on + strand, within Psyr_2925at 3514.472 kb on + strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.556 kb on + strandat 3514.556 kb on + strandat 3514.557 kb on - strandat 3514.557 kb on - strandat 3514.564 kb on - strandat 3514.564 kb on - strandat 3514.640 kb on + strandat 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.965 kb on - strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.172 kb on - strand, within Psyr_2926at 3515.172 kb on - strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.188 kb on - strand, within Psyr_2926at 3515.694 kb on - strand, within Psyr_2926at 3515.859 kb on + strandat 3515.860 kb on - strandat 3515.934 kb on - strandat 3516.016 kb on + strandat 3516.124 kb on - strand, within Psyr_2927at 3516.186 kb on + strand, within Psyr_2927at 3516.408 kb on - strand, within Psyr_2927at 3516.500 kb on + strand, within Psyr_2927at 3516.793 kb on + strandat 3516.794 kb on - strandat 3516.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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3,513,682 + Psyr_2924 0.56 -0.4
3,513,806 + Psyr_2924 0.66 -0.0
3,513,807 - Psyr_2924 0.66 +0.5
3,513,807 - Psyr_2924 0.66 -1.2
3,513,807 - Psyr_2924 0.66 -0.1
3,513,807 - Psyr_2924 0.66 +0.9
3,513,918 + Psyr_2924 0.75 -0.0
3,513,919 - Psyr_2924 0.75 -0.4
3,514,021 - Psyr_2924 0.83 +0.4
3,514,038 + Psyr_2924 0.84 +1.5
3,514,039 - Psyr_2924 0.84 +0.6
3,514,039 - Psyr_2924 0.84 +0.5
3,514,039 - Psyr_2924 0.84 +0.5
3,514,039 - Psyr_2924 0.84 +1.0
3,514,039 - Psyr_2924 0.84 +0.8
3,514,096 - Psyr_2924 0.88 +1.0
3,514,221 + -0.3
3,514,232 - +2.3
3,514,291 + Psyr_2925 0.15 -2.0
3,514,472 + Psyr_2925 0.68 -0.9
3,514,473 - Psyr_2925 0.68 -1.0
3,514,473 - Psyr_2925 0.68 +0.1
3,514,473 - Psyr_2925 0.68 -0.4
3,514,473 - Psyr_2925 0.68 -1.3
3,514,556 + +1.0
3,514,556 + -2.0
3,514,557 - +0.1
3,514,557 - +0.6
3,514,564 - -1.1
3,514,564 - -0.1
3,514,640 + -0.7
3,514,964 + Psyr_2926 0.25 -2.2
3,514,964 + Psyr_2926 0.25 +0.4
3,514,964 + Psyr_2926 0.25 +0.4
3,514,964 + Psyr_2926 0.25 +0.6
3,514,964 + Psyr_2926 0.25 +0.9
3,514,964 + Psyr_2926 0.25 -2.2
3,514,965 - Psyr_2926 0.25 +0.4
3,515,171 + Psyr_2926 0.42 -1.7
3,515,171 + Psyr_2926 0.42 -1.0
3,515,171 + Psyr_2926 0.42 -0.8
3,515,171 + Psyr_2926 0.42 -0.4
3,515,172 - Psyr_2926 0.42 +0.5
3,515,172 - Psyr_2926 0.42 +0.8
3,515,177 + Psyr_2926 0.43 +1.2
3,515,177 + Psyr_2926 0.43 +0.3
3,515,177 + Psyr_2926 0.43 -1.4
3,515,177 + Psyr_2926 0.43 +0.4
3,515,188 - Psyr_2926 0.44 +0.7
3,515,694 - Psyr_2926 0.86 +1.8
3,515,859 + +0.2
3,515,860 - +0.5
3,515,934 - +1.2
3,516,016 + -0.8
3,516,124 - Psyr_2927 0.24 +1.4
3,516,186 + Psyr_2927 0.33 -1.1
3,516,408 - Psyr_2927 0.69 -1.7
3,516,500 + Psyr_2927 0.84 -1.7
3,516,793 + +2.2
3,516,794 - -1.5
3,516,835 + -0.0

Or see this region's nucleotide sequence