Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2875

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2873 and Psyr_2874 are separated by 7 nucleotidesPsyr_2874 and Psyr_2875 overlap by 4 nucleotidesPsyr_2875 and Psyr_2876 overlap by 14 nucleotides Psyr_2873: Psyr_2873 - Acyl-CoA dehydrogenase, C-terminal, at 3,447,102 to 3,448,340 _2873 Psyr_2874: Psyr_2874 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,448,348 to 3,449,334 _2874 Psyr_2875: Psyr_2875 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,449,331 to 3,450,335 _2875 Psyr_2876: Psyr_2876 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,450,322 to 3,451,893 _2876 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3448.349 kb on + strandat 3448.349 kb on + strandat 3448.436 kb on + strandat 3448.703 kb on + strand, within Psyr_2874at 3448.704 kb on - strand, within Psyr_2874at 3448.706 kb on + strand, within Psyr_2874at 3448.707 kb on - strand, within Psyr_2874at 3448.707 kb on - strand, within Psyr_2874at 3448.871 kb on + strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3449.104 kb on + strandat 3449.328 kb on + strandat 3449.493 kb on - strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.934 kb on + strand, within Psyr_2875at 3450.318 kb on + strandat 3450.335 kb on + strandat 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.615 kb on - strand, within Psyr_2876at 3450.615 kb on - strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.617 kb on - strand, within Psyr_2876at 3451.127 kb on + strand, within Psyr_2876at 3451.128 kb on - strand, within Psyr_2876at 3451.265 kb on + strand, within Psyr_2876at 3451.266 kb on - strand, within Psyr_2876at 3451.277 kb on + strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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3,448,349 + +3.4
3,448,349 + +0.6
3,448,436 + +4.0
3,448,703 + Psyr_2874 0.36 +0.5
3,448,704 - Psyr_2874 0.36 -0.3
3,448,706 + Psyr_2874 0.36 +0.0
3,448,707 - Psyr_2874 0.36 +1.0
3,448,707 - Psyr_2874 0.36 +0.4
3,448,871 + Psyr_2874 0.53 +0.8
3,448,872 - Psyr_2874 0.53 +0.1
3,448,872 - Psyr_2874 0.53 -0.1
3,448,872 - Psyr_2874 0.53 -2.2
3,448,872 - Psyr_2874 0.53 -0.4
3,448,872 - Psyr_2874 0.53 +0.6
3,448,872 - Psyr_2874 0.53 +0.6
3,449,104 + -1.4
3,449,328 + +0.1
3,449,493 - Psyr_2875 0.16 -0.2
3,449,656 + Psyr_2875 0.32 -0.7
3,449,656 + Psyr_2875 0.32 -1.2
3,449,656 + Psyr_2875 0.32 -1.2
3,449,656 + Psyr_2875 0.32 +0.1
3,449,934 + Psyr_2875 0.60 -3.1
3,450,318 + -1.3
3,450,335 + +0.2
3,450,614 + Psyr_2876 0.19 +0.4
3,450,614 + Psyr_2876 0.19 -1.4
3,450,614 + Psyr_2876 0.19 +0.4
3,450,614 + Psyr_2876 0.19 +1.0
3,450,614 + Psyr_2876 0.19 +0.1
3,450,614 + Psyr_2876 0.19 +0.6
3,450,615 - Psyr_2876 0.19 +0.6
3,450,615 - Psyr_2876 0.19 -0.0
3,450,616 + Psyr_2876 0.19 +3.1
3,450,616 + Psyr_2876 0.19 -0.7
3,450,616 + Psyr_2876 0.19 -0.7
3,450,617 - Psyr_2876 0.19 +0.1
3,451,127 + Psyr_2876 0.51 +0.0
3,451,128 - Psyr_2876 0.51 +0.2
3,451,265 + Psyr_2876 0.60 +0.1
3,451,266 - Psyr_2876 0.60 -0.1
3,451,277 + Psyr_2876 0.61 +1.0
3,451,278 - Psyr_2876 0.61 -1.8
3,451,278 - Psyr_2876 0.61 -2.1

Or see this region's nucleotide sequence