Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2759 and Psyr_RNA43 are separated by 167 nucleotides Psyr_RNA43 and Psyr_2760 are separated by 186 nucleotides Psyr_2760 and Psyr_2761 are separated by 46 nucleotides Psyr_2761 and Psyr_2762 overlap by 14 nucleotides Psyr_2762 and Psyr_2763 are separated by 121 nucleotides
Psyr_2759: Psyr_2759 - Eukaryotic-like DNA topoisomerase I, at 3,346,803 to 3,347,873
_2759
Psyr_RNA43: Psyr_RNA43 - tRNA-Leu, at 3,348,041 to 3,348,126
_RNA43
Psyr_2760: Psyr_2760 - hypothetical protein, at 3,348,313 to 3,348,675
_2760
Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002
_2761
Psyr_2762: Psyr_2762 - Peptidase S24, S26A and S26B, at 3,349,989 to 3,350,420
_2762
Psyr_2763: Psyr_2763 - Protein of unknown function DUF159, at 3,350,542 to 3,351,231
_2763
Position (kb) 3348
3349
3350
3351 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3347.802 kb on + strand at 3347.802 kb on + strand at 3347.846 kb on + strand at 3347.970 kb on + strand at 3347.971 kb on - strand at 3348.014 kb on + strand at 3348.014 kb on + strand at 3348.014 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.016 kb on + strand at 3348.018 kb on + strand at 3348.018 kb on + strand at 3348.018 kb on + strand at 3348.018 kb on + strand at 3348.191 kb on + strand at 3348.191 kb on + strand at 3348.191 kb on + strand at 3348.192 kb on - strand at 3348.276 kb on + strand at 3348.281 kb on + strand at 3348.402 kb on + strand, within Psyr_2760 at 3348.403 kb on - strand, within Psyr_2760 at 3348.403 kb on - strand, within Psyr_2760 at 3348.403 kb on - strand, within Psyr_2760 at 3348.423 kb on - strand, within Psyr_2760 at 3348.435 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.531 kb on + strand, within Psyr_2760 at 3348.532 kb on - strand, within Psyr_2760 at 3348.532 kb on - strand, within Psyr_2760 at 3348.532 kb on - strand, within Psyr_2760 at 3348.765 kb on + strand at 3348.975 kb on + strand, within Psyr_2761 at 3348.975 kb on + strand, within Psyr_2761 at 3348.975 kb on + strand, within Psyr_2761 at 3348.975 kb on + strand, within Psyr_2761 at 3348.975 kb on + strand, within Psyr_2761 at 3348.976 kb on - strand, within Psyr_2761 at 3348.976 kb on - strand, within Psyr_2761 at 3348.976 kb on - strand, within Psyr_2761 at 3348.981 kb on + strand, within Psyr_2761 at 3348.981 kb on + strand, within Psyr_2761 at 3348.982 kb on - strand, within Psyr_2761 at 3348.982 kb on - strand, within Psyr_2761 at 3349.084 kb on - strand, within Psyr_2761 at 3349.084 kb on - strand, within Psyr_2761 at 3349.087 kb on + strand, within Psyr_2761 at 3349.087 kb on + strand, within Psyr_2761 at 3349.087 kb on + strand, within Psyr_2761 at 3349.088 kb on - strand, within Psyr_2761 at 3349.088 kb on - strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.108 kb on + strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.109 kb on - strand, within Psyr_2761 at 3349.185 kb on + strand, within Psyr_2761 at 3349.185 kb on + strand, within Psyr_2761 at 3349.186 kb on - strand, within Psyr_2761 at 3349.186 kb on - strand, within Psyr_2761 at 3349.352 kb on + strand, within Psyr_2761 at 3349.409 kb on + strand, within Psyr_2761 at 3349.409 kb on + strand, within Psyr_2761 at 3349.409 kb on + strand, within Psyr_2761 at 3349.409 kb on + strand, within Psyr_2761 at 3349.410 kb on - strand, within Psyr_2761 at 3349.410 kb on - strand, within Psyr_2761 at 3349.410 kb on - strand, within Psyr_2761 at 3349.459 kb on + strand, within Psyr_2761 at 3349.459 kb on + strand, within Psyr_2761 at 3349.459 kb on + strand, within Psyr_2761 at 3349.460 kb on - strand, within Psyr_2761 at 3349.460 kb on - strand, within Psyr_2761 at 3349.460 kb on - strand, within Psyr_2761 at 3349.460 kb on - strand, within Psyr_2761 at 3349.595 kb on + strand, within Psyr_2761 at 3349.595 kb on + strand, within Psyr_2761 at 3349.596 kb on - strand, within Psyr_2761 at 3349.598 kb on - strand, within Psyr_2761 at 3349.693 kb on + strand, within Psyr_2761 at 3349.694 kb on - strand, within Psyr_2761 at 3349.694 kb on - strand, within Psyr_2761 at 3349.695 kb on + strand, within Psyr_2761 at 3349.696 kb on - strand, within Psyr_2761 at 3349.759 kb on - strand, within Psyr_2761 at 3349.767 kb on + strand, within Psyr_2761 at 3349.767 kb on + strand, within Psyr_2761 at 3349.767 kb on + strand, within Psyr_2761 at 3349.768 kb on - strand, within Psyr_2761 at 3349.768 kb on - strand, within Psyr_2761 at 3349.768 kb on - strand, within Psyr_2761 at 3349.824 kb on + strand, within Psyr_2761 at 3349.860 kb on + strand, within Psyr_2761 at 3349.860 kb on + strand, within Psyr_2761 at 3349.860 kb on + strand, within Psyr_2761 at 3349.861 kb on - strand, within Psyr_2761 at 3349.892 kb on - strand at 3349.902 kb on - strand at 3349.902 kb on - strand at 3349.902 kb on - strand at 3349.953 kb on + strand at 3350.018 kb on - strand at 3350.112 kb on - strand, within Psyr_2762 at 3350.112 kb on - strand, within Psyr_2762 at 3350.112 kb on - strand, within Psyr_2762 at 3350.166 kb on - strand, within Psyr_2762 at 3350.196 kb on + strand, within Psyr_2762 at 3350.197 kb on - strand, within Psyr_2762 at 3350.217 kb on - strand, within Psyr_2762 at 3350.255 kb on + strand, within Psyr_2762 at 3350.263 kb on + strand, within Psyr_2762 at 3350.304 kb on + strand, within Psyr_2762 at 3350.304 kb on + strand, within Psyr_2762 at 3350.304 kb on + strand, within Psyr_2762 at 3350.305 kb on - strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.306 kb on + strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.307 kb on - strand, within Psyr_2762 at 3350.353 kb on - strand, within Psyr_2762 at 3350.407 kb on + strand at 3350.407 kb on + strand at 3350.408 kb on - strand at 3350.581 kb on + strand at 3350.581 kb on + strand at 3350.585 kb on + strand at 3350.585 kb on + strand at 3350.586 kb on - strand at 3350.647 kb on + strand, within Psyr_2763 at 3350.648 kb on - strand, within Psyr_2763 at 3350.648 kb on - strand, within Psyr_2763 at 3350.648 kb on - strand, within Psyr_2763 at 3350.902 kb on + strand, within Psyr_2763 at 3350.902 kb on + strand, within Psyr_2763 at 3350.902 kb on + strand, within Psyr_2763 at 3350.902 kb on + strand, within Psyr_2763 at 3350.902 kb on + strand, within Psyr_2763 at 3350.903 kb on - strand, within Psyr_2763 at 3350.903 kb on - strand, within Psyr_2763 at 3350.903 kb on - strand, within Psyr_2763 at 3351.000 kb on + strand, within Psyr_2763 at 3351.001 kb on - strand, within Psyr_2763
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 3,347,802 + +0.4 3,347,802 + -2.1 3,347,846 + -2.0 3,347,970 + +0.3 3,347,971 - -1.0 3,348,014 + -0.7 3,348,014 + -1.0 3,348,014 + +1.3 3,348,016 + -1.3 3,348,016 + +0.6 3,348,016 + -0.3 3,348,016 + +0.4 3,348,016 + -0.4 3,348,016 + -2.0 3,348,016 + +0.6 3,348,018 + +3.3 3,348,018 + -0.7 3,348,018 + +1.4 3,348,018 + -2.2 3,348,191 + +2.4 3,348,191 + +0.1 3,348,191 + +0.8 3,348,192 - -2.3 3,348,276 + -0.5 3,348,281 + +0.4 3,348,402 + Psyr_2760 0.25 +0.6 3,348,403 - Psyr_2760 0.25 +0.6 3,348,403 - Psyr_2760 0.25 -0.3 3,348,403 - Psyr_2760 0.25 +0.9 3,348,423 - Psyr_2760 0.30 +0.3 3,348,435 + Psyr_2760 0.34 +0.0 3,348,531 + Psyr_2760 0.60 +0.9 3,348,531 + Psyr_2760 0.60 +0.1 3,348,531 + Psyr_2760 0.60 -1.4 3,348,531 + Psyr_2760 0.60 +0.8 3,348,531 + Psyr_2760 0.60 +0.4 3,348,531 + Psyr_2760 0.60 -0.6 3,348,531 + Psyr_2760 0.60 -1.7 3,348,531 + Psyr_2760 0.60 -0.6 3,348,531 + Psyr_2760 0.60 -0.6 3,348,531 + Psyr_2760 0.60 -0.9 3,348,531 + Psyr_2760 0.60 -0.9 3,348,532 - Psyr_2760 0.60 +0.4 3,348,532 - Psyr_2760 0.60 -0.7 3,348,532 - Psyr_2760 0.60 +0.7 3,348,765 + +1.7 3,348,975 + Psyr_2761 0.20 +0.6 3,348,975 + Psyr_2761 0.20 +1.4 3,348,975 + Psyr_2761 0.20 +0.2 3,348,975 + Psyr_2761 0.20 -0.7 3,348,975 + Psyr_2761 0.20 +1.1 3,348,976 - Psyr_2761 0.20 -1.4 3,348,976 - Psyr_2761 0.20 +1.1 3,348,976 - Psyr_2761 0.20 -0.4 3,348,981 + Psyr_2761 0.20 -1.7 3,348,981 + Psyr_2761 0.20 +2.9 3,348,982 - Psyr_2761 0.20 -0.5 3,348,982 - Psyr_2761 0.20 +1.4 3,349,084 - Psyr_2761 0.28 -0.2 3,349,084 - Psyr_2761 0.28 +0.0 3,349,087 + Psyr_2761 0.28 -0.5 3,349,087 + Psyr_2761 0.28 +0.6 3,349,087 + Psyr_2761 0.28 -1.6 3,349,088 - Psyr_2761 0.29 +2.0 3,349,088 - Psyr_2761 0.29 +2.2 3,349,108 + Psyr_2761 0.30 -4.1 3,349,108 + Psyr_2761 0.30 -0.6 3,349,108 + Psyr_2761 0.30 -1.4 3,349,108 + Psyr_2761 0.30 +0.0 3,349,108 + Psyr_2761 0.30 +1.2 3,349,108 + Psyr_2761 0.30 +0.3 3,349,108 + Psyr_2761 0.30 +1.5 3,349,108 + Psyr_2761 0.30 +0.7 3,349,108 + Psyr_2761 0.30 -0.1 3,349,109 - Psyr_2761 0.30 +0.8 3,349,109 - Psyr_2761 0.30 +1.5 3,349,109 - Psyr_2761 0.30 +0.1 3,349,109 - Psyr_2761 0.30 +2.0 3,349,109 - Psyr_2761 0.30 +0.0 3,349,109 - Psyr_2761 0.30 +2.0 3,349,185 + Psyr_2761 0.36 +1.6 3,349,185 + Psyr_2761 0.36 +1.4 3,349,186 - Psyr_2761 0.36 +2.0 3,349,186 - Psyr_2761 0.36 +1.9 3,349,352 + Psyr_2761 0.49 -1.7 3,349,409 + Psyr_2761 0.54 -3.0 3,349,409 + Psyr_2761 0.54 -1.5 3,349,409 + Psyr_2761 0.54 -0.7 3,349,409 + Psyr_2761 0.54 -0.1 3,349,410 - Psyr_2761 0.54 -0.2 3,349,410 - Psyr_2761 0.54 +0.9 3,349,410 - Psyr_2761 0.54 +1.5 3,349,459 + Psyr_2761 0.58 -2.3 3,349,459 + Psyr_2761 0.58 -1.4 3,349,459 + Psyr_2761 0.58 +0.0 3,349,460 - Psyr_2761 0.58 +1.1 3,349,460 - Psyr_2761 0.58 -0.4 3,349,460 - Psyr_2761 0.58 -2.0 3,349,460 - Psyr_2761 0.58 -1.8 3,349,595 + Psyr_2761 0.68 -0.0 3,349,595 + Psyr_2761 0.68 +2.8 3,349,596 - Psyr_2761 0.68 -0.8 3,349,598 - Psyr_2761 0.68 +1.4 3,349,693 + Psyr_2761 0.76 +0.4 3,349,694 - Psyr_2761 0.76 +2.1 3,349,694 - Psyr_2761 0.76 -1.5 3,349,695 + Psyr_2761 0.76 -1.6 3,349,696 - Psyr_2761 0.76 -0.0 3,349,759 - Psyr_2761 0.81 +1.0 3,349,767 + Psyr_2761 0.82 +1.9 3,349,767 + Psyr_2761 0.82 -0.2 3,349,767 + Psyr_2761 0.82 -1.3 3,349,768 - Psyr_2761 0.82 +2.6 3,349,768 - Psyr_2761 0.82 +1.3 3,349,768 - Psyr_2761 0.82 +0.7 3,349,824 + Psyr_2761 0.86 +0.3 3,349,860 + Psyr_2761 0.89 +1.3 3,349,860 + Psyr_2761 0.89 -0.6 3,349,860 + Psyr_2761 0.89 +0.4 3,349,861 - Psyr_2761 0.89 -1.1 3,349,892 - +1.9 3,349,902 - +0.2 3,349,902 - -0.8 3,349,902 - +0.1 3,349,953 + -1.2 3,350,018 - -1.2 3,350,112 - Psyr_2762 0.28 +0.0 3,350,112 - Psyr_2762 0.28 +0.7 3,350,112 - Psyr_2762 0.28 -0.7 3,350,166 - Psyr_2762 0.41 +0.2 3,350,196 + Psyr_2762 0.48 +0.7 3,350,197 - Psyr_2762 0.48 +1.2 3,350,217 - Psyr_2762 0.53 +0.9 3,350,255 + Psyr_2762 0.62 +2.9 3,350,263 + Psyr_2762 0.63 +0.5 3,350,304 + Psyr_2762 0.73 +0.4 3,350,304 + Psyr_2762 0.73 -1.7 3,350,304 + Psyr_2762 0.73 -0.3 3,350,305 - Psyr_2762 0.73 -0.6 3,350,306 + Psyr_2762 0.73 +0.8 3,350,306 + Psyr_2762 0.73 +0.9 3,350,306 + Psyr_2762 0.73 +0.9 3,350,306 + Psyr_2762 0.73 +1.3 3,350,306 + Psyr_2762 0.73 +0.2 3,350,306 + Psyr_2762 0.73 +1.3 3,350,306 + Psyr_2762 0.73 +1.6 3,350,306 + Psyr_2762 0.73 +0.8 3,350,306 + Psyr_2762 0.73 -0.8 3,350,306 + Psyr_2762 0.73 +2.0 3,350,306 + Psyr_2762 0.73 -0.1 3,350,306 + Psyr_2762 0.73 -1.2 3,350,306 + Psyr_2762 0.73 +0.8 3,350,306 + Psyr_2762 0.73 +0.1 3,350,307 - Psyr_2762 0.74 -2.2 3,350,307 - Psyr_2762 0.74 -0.0 3,350,307 - Psyr_2762 0.74 -0.0 3,350,307 - Psyr_2762 0.74 +0.6 3,350,307 - Psyr_2762 0.74 -1.8 3,350,307 - Psyr_2762 0.74 +0.6 3,350,307 - Psyr_2762 0.74 +0.6 3,350,307 - Psyr_2762 0.74 -1.7 3,350,307 - Psyr_2762 0.74 +1.9 3,350,307 - Psyr_2762 0.74 +0.4 3,350,307 - Psyr_2762 0.74 -0.1 3,350,307 - Psyr_2762 0.74 +0.6 3,350,307 - Psyr_2762 0.74 +2.1 3,350,307 - Psyr_2762 0.74 -0.1 3,350,307 - Psyr_2762 0.74 -1.4 3,350,307 - Psyr_2762 0.74 +1.4 3,350,307 - Psyr_2762 0.74 -0.1 3,350,353 - Psyr_2762 0.84 +1.0 3,350,407 + +0.1 3,350,407 + +1.4 3,350,408 - +0.0 3,350,581 + +0.5 3,350,581 + +1.8 3,350,585 + +0.3 3,350,585 + +1.2 3,350,586 - +0.6 3,350,647 + Psyr_2763 0.15 -0.6 3,350,648 - Psyr_2763 0.15 +0.8 3,350,648 - Psyr_2763 0.15 -0.7 3,350,648 - Psyr_2763 0.15 -0.1 3,350,902 + Psyr_2763 0.52 +2.6 3,350,902 + Psyr_2763 0.52 -0.9 3,350,902 + Psyr_2763 0.52 +0.8 3,350,902 + Psyr_2763 0.52 -0.0 3,350,902 + Psyr_2763 0.52 -0.4 3,350,903 - Psyr_2763 0.52 -0.7 3,350,903 - Psyr_2763 0.52 -0.4 3,350,903 - Psyr_2763 0.52 -1.1 3,351,000 + Psyr_2763 0.66 -1.0 3,351,001 - Psyr_2763 0.67 +0.2
Or see this region's nucleotide sequence