Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2741 and Psyr_2742 are separated by 3 nucleotides Psyr_2742 and Psyr_2743 are separated by 24 nucleotides Psyr_2743 and Psyr_2744 are separated by 15 nucleotides
Psyr_2741: Psyr_2741 - Beta-lactamase, at 3,326,933 to 3,328,123
_2741
Psyr_2742: Psyr_2742 - Iron-containing alcohol dehydrogenase, at 3,328,127 to 3,329,281
_2742
Psyr_2743: Psyr_2743 - Lysine exporter protein (LYSE/YGGA), at 3,329,306 to 3,329,950
_2743
Psyr_2744: Psyr_2744 - conserved hypothetical protein, at 3,329,966 to 3,331,708
_2744
Position (kb) 3328
3329
3330 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3327.313 kb on - strand, within Psyr_2741 at 3327.355 kb on - strand, within Psyr_2741 at 3327.593 kb on + strand, within Psyr_2741 at 3327.593 kb on + strand at 3327.594 kb on - strand, within Psyr_2741 at 3327.594 kb on - strand, within Psyr_2741 at 3327.594 kb on - strand, within Psyr_2741 at 3327.612 kb on + strand, within Psyr_2741 at 3328.097 kb on + strand at 3328.164 kb on + strand at 3328.164 kb on + strand at 3328.165 kb on - strand at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.353 kb on + strand, within Psyr_2742 at 3328.411 kb on - strand, within Psyr_2742 at 3328.452 kb on + strand, within Psyr_2742 at 3329.031 kb on + strand, within Psyr_2742 at 3329.031 kb on + strand, within Psyr_2742 at 3329.032 kb on - strand, within Psyr_2742 at 3329.144 kb on - strand, within Psyr_2742 at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.288 kb on - strand at 3329.295 kb on + strand at 3329.410 kb on - strand, within Psyr_2743 at 3329.490 kb on - strand, within Psyr_2743 at 3329.553 kb on + strand at 3329.553 kb on + strand, within Psyr_2743 at 3329.553 kb on + strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.604 kb on + strand, within Psyr_2743 at 3329.704 kb on - strand, within Psyr_2743 at 3329.950 kb on + strand at 3329.950 kb on + strand at 3329.953 kb on + strand at 3330.105 kb on + strand at 3330.105 kb on + strand at 3330.106 kb on - strand at 3330.106 kb on - strand at 3330.114 kb on + strand at 3330.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 3,327,313 - Psyr_2741 0.32 +0.9 3,327,355 - Psyr_2741 0.35 -0.7 3,327,593 + Psyr_2741 0.55 -0.6 3,327,593 + +2.2 3,327,594 - Psyr_2741 0.55 +2.9 3,327,594 - Psyr_2741 0.55 -0.3 3,327,594 - Psyr_2741 0.55 -0.6 3,327,612 + Psyr_2741 0.57 +0.2 3,328,097 + -0.9 3,328,164 + -0.4 3,328,164 + -0.6 3,328,165 - -0.3 3,328,273 + Psyr_2742 0.13 -0.4 3,328,273 + Psyr_2742 0.13 -0.4 3,328,273 + Psyr_2742 0.13 +0.8 3,328,273 + Psyr_2742 0.13 +1.2 3,328,273 + Psyr_2742 0.13 +1.4 3,328,274 - Psyr_2742 0.13 -0.1 3,328,274 - Psyr_2742 0.13 +0.6 3,328,274 - Psyr_2742 0.13 +0.3 3,328,274 - Psyr_2742 0.13 -0.2 3,328,274 - Psyr_2742 0.13 +0.2 3,328,274 - Psyr_2742 0.13 +0.6 3,328,353 + Psyr_2742 0.20 +0.6 3,328,411 - Psyr_2742 0.25 +1.6 3,328,452 + Psyr_2742 0.28 -0.2 3,329,031 + Psyr_2742 0.78 -1.2 3,329,031 + Psyr_2742 0.78 +0.7 3,329,032 - Psyr_2742 0.78 +1.3 3,329,144 - Psyr_2742 0.88 -2.7 3,329,189 + -0.4 3,329,189 + -1.4 3,329,189 + +2.6 3,329,189 + +1.0 3,329,189 + -1.4 3,329,189 + +0.0 3,329,190 - -2.1 3,329,190 - +3.1 3,329,190 - -0.1 3,329,190 - +1.1 3,329,190 - -0.8 3,329,190 - -1.2 3,329,190 - -0.3 3,329,288 - +0.1 3,329,295 + +1.4 3,329,410 - Psyr_2743 0.16 -1.2 3,329,490 - Psyr_2743 0.29 -0.3 3,329,553 + -1.0 3,329,553 + Psyr_2743 0.38 -0.2 3,329,553 + Psyr_2743 0.38 +1.6 3,329,554 - Psyr_2743 0.38 +0.0 3,329,554 - Psyr_2743 0.38 -0.6 3,329,604 + Psyr_2743 0.46 +1.0 3,329,704 - Psyr_2743 0.62 -0.8 3,329,950 + +0.0 3,329,950 + -0.6 3,329,953 + +1.2 3,330,105 + -2.1 3,330,105 + -1.8 3,330,106 - -1.0 3,330,106 - +0.0 3,330,114 + -1.2 3,330,114 + +0.4
Or see this region's nucleotide sequence