Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2435

Experiment: KB with Quercetin 360 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Quercetin 360 ug/ml
2,817,985	+				+1.7
2,818,184	-				+0.7
2,818,303	+		Psyr_2434	0.32	+1.3
2,818,304	-		Psyr_2434	0.32	+0.7
2,818,304	-		Psyr_2434	0.32	+2.3
2,818,647	+		Psyr_2434	0.68	-0.7
2,818,647	+		Psyr_2434	0.68	-0.1
2,818,647	+		Psyr_2434	0.68	+0.5
2,818,648	-		Psyr_2434	0.68	+0.7
2,818,648	-		Psyr_2434	0.68	-0.9
2,818,648	-		Psyr_2434	0.68	-0.9
2,818,771	-		Psyr_2434	0.81	+0.3
2,818,945	+				-0.2
2,818,945	+				-1.3
2,818,945	+				+1.1
2,818,945	+				-0.9
2,818,945	+				-0.4
2,818,945	+				-0.3
2,818,946	-				+0.9
2,818,946	-				-0.9
2,818,994	-				-0.3
2,819,002	+				-0.9
2,819,318	+		Psyr_2435	0.24	+2.2
2,819,641	+		Psyr_2435	0.45	+2.1
2,819,641	+		Psyr_2435	0.45	+0.7
2,819,641	+		Psyr_2435	0.45	+0.4
2,819,642	-		Psyr_2435	0.45	+1.3
2,819,691	-		Psyr_2435	0.49	+0.9
2,819,960	-		Psyr_2435	0.67	+0.2
2,819,960	-		Psyr_2435	0.67	+0.9
2,819,969	-		Psyr_2435	0.68	-3.2
2,819,969	-		Psyr_2435	0.68	+1.0
2,820,050	+		Psyr_2435	0.73	+1.4
2,820,050	+		Psyr_2435	0.73	-0.9
2,820,609	+		Psyr_2436	0.10	-0.7
2,820,612	+		Psyr_2436	0.10	-1.3
2,820,612	+		Psyr_2436	0.10	-0.7
2,820,612	+		Psyr_2436	0.10	-0.6
2,820,612	+		Psyr_2436	0.10	-0.0
2,820,613	-		Psyr_2436	0.10	-0.8
2,820,613	-		Psyr_2436	0.10	-1.2
2,820,613	-		Psyr_2436	0.10	-2.3
2,820,613	-		Psyr_2436	0.10	-0.0
2,820,671	+		Psyr_2436	0.14	+0.5
2,820,671	+		Psyr_2436	0.14	-0.1
2,820,672	-		Psyr_2436	0.14	+0.3
2,820,672	-		Psyr_2436	0.14	+0.2
2,820,704	+		Psyr_2436	0.16	-0.3
2,820,704	+		Psyr_2436	0.16	-0.1
2,820,882	-		Psyr_2436	0.28	+1.5
2,820,939	+		Psyr_2436	0.32	+1.3
2,820,939	+		Psyr_2436	0.32	-0.3
2,820,940	-		Psyr_2436	0.32	-0.6
2,820,941	+		Psyr_2436	0.32	+0.1
2,820,941	+		Psyr_2436	0.32	-0.9
2,820,941	+		Psyr_2436	0.32	-0.7
2,820,941	+		Psyr_2436	0.32	-2.1
2,820,941	+		Psyr_2436	0.32	-1.6
2,820,941	+		Psyr_2436	0.32	+0.7
2,820,941	+		Psyr_2436	0.32	+0.3
2,820,941	+		Psyr_2436	0.32	-0.4
2,820,941	+		Psyr_2436	0.32	-0.3
2,820,941	+		Psyr_2436	0.32	-1.4
2,820,942	-		Psyr_2436	0.33	-0.1
2,820,942	-		Psyr_2436	0.33	+0.3
2,820,942	-		Psyr_2436	0.33	+0.2
2,820,942	-		Psyr_2436	0.33	+0.2
2,820,942	-		Psyr_2436	0.33	+0.6
2,820,942	-		Psyr_2436	0.33	+0.7
2,820,942	-		Psyr_2436	0.33	+1.0
2,820,942	-		Psyr_2436	0.33	-0.1
2,820,942	-		Psyr_2436	0.33	-0.5
2,820,942	-		Psyr_2436	0.33	-0.3
2,820,942	-		Psyr_2436	0.33	-0.4
2,820,942	-		Psyr_2436	0.33	+1.8
2,820,942	-		Psyr_2436	0.33	+0.5
2,820,942	-		Psyr_2436	0.33	-0.9
2,820,953	+		Psyr_2436	0.33	-1.6
2,820,953	+		Psyr_2436	0.33	-0.5
2,820,953	+		Psyr_2436	0.33	-0.5
2,820,953	+		Psyr_2436	0.33	+0.0
2,820,953	+		Psyr_2436	0.33	+0.1
2,820,953	+		Psyr_2436	0.33	-2.6
2,820,953	+		Psyr_2436	0.33	-1.0
2,820,954	-		Psyr_2436	0.33	+1.7
2,820,954	-		Psyr_2436	0.33	+0.2
2,820,954	-		Psyr_2436	0.33	-0.9
2,820,954	-		Psyr_2436	0.33	-1.2
2,820,954	-		Psyr_2436	0.33	+0.3
2,820,954	-		Psyr_2436	0.33	-2.8
2,820,954	-		Psyr_2436	0.33	-0.1
2,820,954	-		Psyr_2436	0.33	-0.5
2,821,020	-		Psyr_2436	0.38	+0.2
2,821,071	-		Psyr_2436	0.41	-1.1
2,821,246	-		Psyr_2436	0.53	+1.5
2,821,246	-		Psyr_2436	0.53	-0.6
2,821,246	-		Psyr_2436	0.53	-0.5
2,821,246	-		Psyr_2436	0.53	+0.8
2,821,248	+		Psyr_2436	0.53	+0.6
2,821,249	-		Psyr_2436	0.53	+0.3
2,821,402	-		Psyr_2436	0.64	-0.3