Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1637

Experiment: KB with Quercetin 360 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1635 and Psyr_1636 are separated by 199 nucleotidesPsyr_1636 and Psyr_1637 are separated by 34 nucleotidesPsyr_1637 and Psyr_1638 are separated by 154 nucleotides Psyr_1635: Psyr_1635 - lipid-A-disaccharide kinase, at 1,839,118 to 1,840,113 _1635 Psyr_1636: Psyr_1636 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,840,313 to 1,841,077 _1636 Psyr_1637: Psyr_1637 - UDP-N-acetylmuramate dehydrogenase, at 1,841,112 to 1,842,131 _1637 Psyr_1638: Psyr_1638 - RNAse E, at 1,842,286 to 1,845,648 _1638 Position (kb) 1841 1842 1843Strain fitness (log2 ratio) -2 -1 0 1at 1842.632 kb on + strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
remove
1,842,632 + Psyr_1638 0.10 -1.5
1,842,633 - Psyr_1638 0.10 -1.6
1,842,633 - Psyr_1638 0.10 +0.7
1,842,633 - Psyr_1638 0.10 -0.3
1,842,788 - Psyr_1638 0.15 -2.7
1,842,788 - Psyr_1638 0.15 -1.8
1,842,788 - Psyr_1638 0.15 -1.6

Or see this region's nucleotide sequence