Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1532

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1531 and Psyr_1532 overlap by 1 nucleotidesPsyr_1532 and Psyr_1533 overlap by 4 nucleotidesPsyr_1533 and Psyr_1534 are separated by 1 nucleotides Psyr_1531: Psyr_1531 - replicative DNA helicase (phage and plasmid), at 1,720,372 to 1,721,718 _1531 Psyr_1532: Psyr_1532 - hypothetical protein, at 1,721,718 to 1,722,419 _1532 Psyr_1533: Psyr_1533 - hypothetical protein, at 1,722,416 to 1,723,171 _1533 Psyr_1534: Psyr_1534 - chromosome partitioning related protein, at 1,723,173 to 1,724,033 _1534 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1720.735 kb on - strand, within Psyr_1531at 1720.858 kb on + strand, within Psyr_1531at 1720.858 kb on + strand, within Psyr_1531at 1720.858 kb on + strand, within Psyr_1531at 1720.858 kb on + strand, within Psyr_1531at 1720.859 kb on - strand, within Psyr_1531at 1720.859 kb on - strand, within Psyr_1531at 1720.859 kb on - strand, within Psyr_1531at 1720.859 kb on - strand, within Psyr_1531at 1720.859 kb on - strandat 1720.875 kb on - strand, within Psyr_1531at 1720.985 kb on + strand, within Psyr_1531at 1720.985 kb on + strand, within Psyr_1531at 1720.986 kb on - strand, within Psyr_1531at 1721.041 kb on - strand, within Psyr_1531at 1721.063 kb on - strand, within Psyr_1531at 1721.134 kb on + strand, within Psyr_1531at 1721.134 kb on + strand, within Psyr_1531at 1721.135 kb on - strand, within Psyr_1531at 1721.135 kb on - strand, within Psyr_1531at 1721.135 kb on - strand, within Psyr_1531at 1721.235 kb on + strand, within Psyr_1531at 1721.235 kb on + strand, within Psyr_1531at 1721.235 kb on + strand, within Psyr_1531at 1721.367 kb on - strand, within Psyr_1531at 1721.379 kb on + strand, within Psyr_1531at 1721.380 kb on - strand, within Psyr_1531at 1721.390 kb on - strand, within Psyr_1531at 1721.390 kb on - strand, within Psyr_1531at 1721.420 kb on + strand, within Psyr_1531at 1721.420 kb on + strand, within Psyr_1531at 1721.421 kb on - strand, within Psyr_1531at 1721.471 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.494 kb on + strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.495 kb on - strand, within Psyr_1531at 1721.502 kb on + strand, within Psyr_1531at 1721.503 kb on - strand, within Psyr_1531at 1721.503 kb on - strand, within Psyr_1531at 1721.572 kb on + strand, within Psyr_1531at 1721.572 kb on + strand, within Psyr_1531at 1721.610 kb on + strandat 1721.611 kb on - strandat 1721.611 kb on - strandat 1721.613 kb on + strandat 1721.613 kb on + strandat 1721.703 kb on + strandat 1721.703 kb on + strandat 1721.703 kb on + strandat 1721.703 kb on + strandat 1721.703 kb on + strandat 1721.704 kb on - strandat 1721.704 kb on - strandat 1721.704 kb on - strandat 1721.784 kb on - strandat 1721.784 kb on - strandat 1721.784 kb on - strandat 1721.887 kb on + strand, within Psyr_1532at 1721.887 kb on + strand, within Psyr_1532at 1721.888 kb on - strand, within Psyr_1532at 1721.938 kb on + strand, within Psyr_1532at 1721.938 kb on + strand, within Psyr_1532at 1722.082 kb on + strand, within Psyr_1532at 1722.082 kb on + strand, within Psyr_1532at 1722.082 kb on + strand, within Psyr_1532at 1722.082 kb on + strand, within Psyr_1532at 1722.083 kb on - strand, within Psyr_1532at 1722.083 kb on - strand, within Psyr_1532at 1722.083 kb on - strand, within Psyr_1532at 1722.240 kb on + strand, within Psyr_1532at 1722.241 kb on - strand, within Psyr_1532at 1722.302 kb on + strand, within Psyr_1532at 1722.341 kb on + strand, within Psyr_1532at 1722.505 kb on + strand, within Psyr_1533at 1722.505 kb on + strand, within Psyr_1533at 1722.574 kb on - strand, within Psyr_1533at 1722.574 kb on - strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.709 kb on + strand, within Psyr_1533at 1722.709 kb on + strand, within Psyr_1533at 1722.726 kb on + strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.738 kb on + strand, within Psyr_1533at 1722.738 kb on + strand, within Psyr_1533at 1722.739 kb on - strand, within Psyr_1533at 1722.739 kb on - strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strandat 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.817 kb on - strand, within Psyr_1533at 1722.834 kb on - strand, within Psyr_1533at 1722.834 kb on - strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.985 kb on - strand, within Psyr_1533at 1722.985 kb on - strand, within Psyr_1533at 1723.021 kb on + strand, within Psyr_1533at 1723.034 kb on + strandat 1723.035 kb on - strand, within Psyr_1533at 1723.102 kb on - strandat 1723.136 kb on - strandat 1723.278 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.347 kb on - strand, within Psyr_1534at 1723.347 kb on - strand, within Psyr_1534at 1723.366 kb on - strand, within Psyr_1534

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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1,720,735 - Psyr_1531 0.27 -0.9
1,720,858 + Psyr_1531 0.36 +0.4
1,720,858 + Psyr_1531 0.36 -0.5
1,720,858 + Psyr_1531 0.36 +2.0
1,720,858 + Psyr_1531 0.36 -0.8
1,720,859 - Psyr_1531 0.36 +1.0
1,720,859 - Psyr_1531 0.36 -0.2
1,720,859 - Psyr_1531 0.36 -2.5
1,720,859 - Psyr_1531 0.36 +2.1
1,720,859 - +0.8
1,720,875 - Psyr_1531 0.37 -0.8
1,720,985 + Psyr_1531 0.46 -1.1
1,720,985 + Psyr_1531 0.46 -1.0
1,720,986 - Psyr_1531 0.46 -0.8
1,721,041 - Psyr_1531 0.50 -2.0
1,721,063 - Psyr_1531 0.51 +2.0
1,721,134 + Psyr_1531 0.57 +0.9
1,721,134 + Psyr_1531 0.57 -1.6
1,721,135 - Psyr_1531 0.57 -0.2
1,721,135 - Psyr_1531 0.57 +1.2
1,721,135 - Psyr_1531 0.57 +0.1
1,721,235 + Psyr_1531 0.64 +1.6
1,721,235 + Psyr_1531 0.64 +0.0
1,721,235 + Psyr_1531 0.64 -2.2
1,721,367 - Psyr_1531 0.74 +0.6
1,721,379 + Psyr_1531 0.75 +0.8
1,721,380 - Psyr_1531 0.75 -0.6
1,721,390 - Psyr_1531 0.76 -1.6
1,721,390 - Psyr_1531 0.76 -0.2
1,721,420 + Psyr_1531 0.78 +0.4
1,721,420 + Psyr_1531 0.78 +0.5
1,721,421 - Psyr_1531 0.78 +0.3
1,721,471 + Psyr_1531 0.82 +0.0
1,721,494 + Psyr_1531 0.83 -0.8
1,721,494 + Psyr_1531 0.83 +1.5
1,721,494 + Psyr_1531 0.83 -1.8
1,721,494 + Psyr_1531 0.83 -0.8
1,721,494 + Psyr_1531 0.83 -0.0
1,721,494 + Psyr_1531 0.83 +0.9
1,721,494 + Psyr_1531 0.83 +1.0
1,721,494 + Psyr_1531 0.83 -0.5
1,721,494 + Psyr_1531 0.83 -1.3
1,721,494 + Psyr_1531 0.83 +0.8
1,721,494 + Psyr_1531 0.83 +0.1
1,721,494 + Psyr_1531 0.83 -1.3
1,721,494 + Psyr_1531 0.83 +0.4
1,721,494 + Psyr_1531 0.83 -0.7
1,721,494 + Psyr_1531 0.83 +0.3
1,721,494 + Psyr_1531 0.83 -1.2
1,721,494 + Psyr_1531 0.83 +0.2
1,721,495 - Psyr_1531 0.83 -0.0
1,721,495 - Psyr_1531 0.83 +0.3
1,721,495 - Psyr_1531 0.83 -0.6
1,721,495 - Psyr_1531 0.83 -0.4
1,721,495 - Psyr_1531 0.83 -0.0
1,721,495 - Psyr_1531 0.83 -0.9
1,721,495 - Psyr_1531 0.83 +2.0
1,721,495 - Psyr_1531 0.83 +0.5
1,721,495 - Psyr_1531 0.83 +0.3
1,721,495 - Psyr_1531 0.83 -0.5
1,721,495 - Psyr_1531 0.83 -0.8
1,721,495 - Psyr_1531 0.83 -1.4
1,721,495 - Psyr_1531 0.83 +0.3
1,721,495 - Psyr_1531 0.83 +0.3
1,721,495 - Psyr_1531 0.83 -0.0
1,721,495 - Psyr_1531 0.83 +2.5
1,721,502 + Psyr_1531 0.84 -0.2
1,721,503 - Psyr_1531 0.84 +0.5
1,721,503 - Psyr_1531 0.84 -0.8
1,721,572 + Psyr_1531 0.89 +0.0
1,721,572 + Psyr_1531 0.89 -0.7
1,721,610 + -1.4
1,721,611 - -0.7
1,721,611 - -0.8
1,721,613 + +1.9
1,721,613 + +0.9
1,721,703 + -0.2
1,721,703 + -0.4
1,721,703 + -1.0
1,721,703 + +0.3
1,721,703 + +0.1
1,721,704 - -0.9
1,721,704 - -0.3
1,721,704 - -1.2
1,721,784 - -1.9
1,721,784 - -0.5
1,721,784 - +0.5
1,721,887 + Psyr_1532 0.24 -0.8
1,721,887 + Psyr_1532 0.24 -1.8
1,721,888 - Psyr_1532 0.24 -1.1
1,721,938 + Psyr_1532 0.31 +0.2
1,721,938 + Psyr_1532 0.31 -0.6
1,722,082 + Psyr_1532 0.52 +1.2
1,722,082 + Psyr_1532 0.52 +1.6
1,722,082 + Psyr_1532 0.52 -1.2
1,722,082 + Psyr_1532 0.52 -0.6
1,722,083 - Psyr_1532 0.52 -2.2
1,722,083 - Psyr_1532 0.52 -1.2
1,722,083 - Psyr_1532 0.52 -0.2
1,722,240 + Psyr_1532 0.74 -0.2
1,722,241 - Psyr_1532 0.75 +0.2
1,722,302 + Psyr_1532 0.83 +0.2
1,722,341 + Psyr_1532 0.89 -1.1
1,722,505 + Psyr_1533 0.12 +1.8
1,722,505 + Psyr_1533 0.12 +0.2
1,722,574 - Psyr_1533 0.21 -0.1
1,722,574 - Psyr_1533 0.21 -1.8
1,722,662 + Psyr_1533 0.33 -1.0
1,722,662 + Psyr_1533 0.33 +0.4
1,722,662 + Psyr_1533 0.33 -0.7
1,722,662 + Psyr_1533 0.33 -0.1
1,722,663 - Psyr_1533 0.33 -0.4
1,722,663 - Psyr_1533 0.33 -0.1
1,722,663 - Psyr_1533 0.33 +0.2
1,722,663 - Psyr_1533 0.33 +1.1
1,722,663 - Psyr_1533 0.33 -0.1
1,722,663 - Psyr_1533 0.33 -0.5
1,722,709 + Psyr_1533 0.39 +1.0
1,722,709 + Psyr_1533 0.39 +1.2
1,722,726 + Psyr_1533 0.41 +2.6
1,722,727 - Psyr_1533 0.41 -0.5
1,722,727 - Psyr_1533 0.41 +1.4
1,722,727 - Psyr_1533 0.41 +1.0
1,722,738 + Psyr_1533 0.43 -0.8
1,722,738 + Psyr_1533 0.43 +0.2
1,722,739 - Psyr_1533 0.43 +1.1
1,722,739 - Psyr_1533 0.43 -0.4
1,722,816 + Psyr_1533 0.53 -0.3
1,722,816 + -0.8
1,722,816 + Psyr_1533 0.53 +0.3
1,722,816 + Psyr_1533 0.53 -2.9
1,722,816 + Psyr_1533 0.53 +1.0
1,722,817 - Psyr_1533 0.53 +2.1
1,722,834 - Psyr_1533 0.55 -1.2
1,722,834 - Psyr_1533 0.55 +2.2
1,722,984 + Psyr_1533 0.75 +2.8
1,722,984 + Psyr_1533 0.75 -2.4
1,722,984 + Psyr_1533 0.75 +0.8
1,722,984 + Psyr_1533 0.75 -1.7
1,722,985 - Psyr_1533 0.75 -1.0
1,722,985 - Psyr_1533 0.75 -1.0
1,723,021 + Psyr_1533 0.80 +0.6
1,723,034 + +0.8
1,723,035 - Psyr_1533 0.82 -1.7
1,723,102 - +1.5
1,723,136 - -2.6
1,723,278 + Psyr_1534 0.12 -0.1
1,723,346 + Psyr_1534 0.20 +0.1
1,723,346 + Psyr_1534 0.20 -0.7
1,723,346 + Psyr_1534 0.20 +0.0
1,723,346 + Psyr_1534 0.20 +0.1
1,723,346 + Psyr_1534 0.20 +1.3
1,723,347 - Psyr_1534 0.20 -0.2
1,723,347 - Psyr_1534 0.20 -1.6
1,723,366 - Psyr_1534 0.22 -0.2

Or see this region's nucleotide sequence