Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1466 and Psyr_1467 are separated by 88 nucleotides Psyr_1467 and Psyr_1468 are separated by 95 nucleotides Psyr_1468 and Psyr_1469 are separated by 61 nucleotides Psyr_1469 and Psyr_1470 are separated by 296 nucleotides
Psyr_1466: Psyr_1466 - hypothetical protein, at 1,654,340 to 1,654,864
_1466
Psyr_1467: Psyr_1467 - conserved hypothetical protein, at 1,654,953 to 1,655,564
_1467
Psyr_1468: Psyr_1468 - hypothetical protein, at 1,655,660 to 1,656,022
_1468
Psyr_1469: Psyr_1469 - hypothetical protein, at 1,656,084 to 1,656,401
_1469
Psyr_1470: Psyr_1470 - hypothetical protein, at 1,656,698 to 1,657,270
_1470
Position (kb) 1655
1656
1657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1654.660 kb on - strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.843 kb on + strand at 1654.843 kb on + strand at 1654.844 kb on - strand at 1654.844 kb on - strand at 1654.847 kb on + strand at 1654.881 kb on + strand at 1654.882 kb on - strand at 1654.884 kb on + strand at 1654.884 kb on + strand at 1654.885 kb on - strand at 1654.885 kb on - strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.928 kb on - strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.050 kb on - strand, within Psyr_1467 at 1655.383 kb on + strand, within Psyr_1467 at 1655.384 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.441 kb on - strand, within Psyr_1467 at 1655.545 kb on + strand at 1655.568 kb on + strand at 1655.568 kb on + strand at 1655.569 kb on - strand at 1655.569 kb on - strand at 1655.593 kb on + strand at 1655.593 kb on + strand at 1655.597 kb on - strand at 1655.652 kb on + strand at 1655.671 kb on - strand at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.699 kb on - strand, within Psyr_1468 at 1655.699 kb on - strand, within Psyr_1468 at 1655.707 kb on - strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.721 kb on - strand, within Psyr_1468 at 1655.745 kb on - strand, within Psyr_1468 at 1655.793 kb on + strand, within Psyr_1468 at 1655.793 kb on + strand, within Psyr_1468 at 1655.794 kb on - strand, within Psyr_1468 at 1655.807 kb on + strand, within Psyr_1468 at 1655.808 kb on - strand, within Psyr_1468 at 1655.891 kb on - strand, within Psyr_1468 at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1656.121 kb on + strand, within Psyr_1469 at 1656.122 kb on - strand, within Psyr_1469 at 1656.122 kb on - strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.125 kb on + strand at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.158 kb on - strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.269 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.323 kb on + strand, within Psyr_1469 at 1656.323 kb on + strand, within Psyr_1469 at 1656.326 kb on + strand, within Psyr_1469 at 1656.378 kb on + strand at 1656.379 kb on - strand at 1656.383 kb on + strand at 1656.383 kb on + strand at 1656.386 kb on + strand at 1656.389 kb on + strand at 1656.390 kb on - strand at 1656.414 kb on - strand at 1656.415 kb on + strand at 1656.416 kb on - strand at 1656.416 kb on - strand at 1656.459 kb on - strand at 1656.467 kb on + strand at 1656.468 kb on - strand at 1656.468 kb on - strand at 1656.490 kb on - strand at 1656.490 kb on - strand at 1656.544 kb on + strand at 1656.597 kb on + strand at 1656.640 kb on + strand at 1656.641 kb on - strand at 1656.687 kb on + strand at 1656.697 kb on - strand at 1656.754 kb on + strand at 1656.763 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.924 kb on + strand, within Psyr_1470 at 1656.924 kb on + strand, within Psyr_1470 at 1656.925 kb on - strand, within Psyr_1470 at 1656.967 kb on + strand, within Psyr_1470 at 1656.967 kb on + strand, within Psyr_1470 at 1656.968 kb on - strand, within Psyr_1470 at 1656.981 kb on + strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.986 kb on - strand, within Psyr_1470
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 1,654,660 - Psyr_1466 0.61 -1.0 1,654,685 + Psyr_1466 0.66 -1.3 1,654,685 + Psyr_1466 0.66 +0.8 1,654,736 + Psyr_1466 0.75 +0.8 1,654,736 + Psyr_1466 0.75 -0.3 1,654,736 + Psyr_1466 0.75 -0.8 1,654,736 + Psyr_1466 0.75 -0.3 1,654,736 + Psyr_1466 0.75 -0.2 1,654,737 - Psyr_1466 0.76 -0.2 1,654,737 - Psyr_1466 0.76 +0.5 1,654,843 + +0.4 1,654,843 + +0.2 1,654,844 - +0.8 1,654,844 - +0.7 1,654,847 + +1.8 1,654,881 + +1.0 1,654,882 - -0.1 1,654,884 + -1.0 1,654,884 + +0.3 1,654,885 - -1.1 1,654,885 - -0.3 1,654,921 + +0.7 1,654,921 + +0.1 1,654,921 + -2.8 1,654,921 + +0.8 1,654,921 + -1.2 1,654,922 - +0.6 1,654,922 - -0.2 1,654,922 - +1.8 1,654,922 - -0.5 1,654,922 - +0.5 1,654,922 - +0.3 1,654,928 - -1.0 1,654,957 + +1.5 1,654,957 + +0.8 1,654,957 + +1.0 1,654,957 + -1.5 1,655,049 + Psyr_1467 0.16 +1.1 1,655,049 + Psyr_1467 0.16 -3.0 1,655,049 + Psyr_1467 0.16 +0.8 1,655,050 - Psyr_1467 0.16 +0.6 1,655,383 + Psyr_1467 0.70 -0.8 1,655,384 - Psyr_1467 0.70 +0.3 1,655,387 - Psyr_1467 0.71 +0.6 1,655,387 - Psyr_1467 0.71 -0.7 1,655,387 - Psyr_1467 0.71 -1.3 1,655,387 - Psyr_1467 0.71 -1.1 1,655,441 - Psyr_1467 0.80 -0.4 1,655,545 + +0.2 1,655,568 + +0.5 1,655,568 + +0.8 1,655,569 - -0.2 1,655,569 - +0.1 1,655,593 + -0.5 1,655,593 + -0.2 1,655,597 - -0.2 1,655,652 + -0.8 1,655,671 - -0.2 1,655,698 + Psyr_1468 0.10 +0.0 1,655,698 + Psyr_1468 0.10 +0.0 1,655,698 + Psyr_1468 0.10 +2.2 1,655,698 + Psyr_1468 0.10 -0.2 1,655,698 + Psyr_1468 0.10 -0.0 1,655,699 - Psyr_1468 0.11 -0.6 1,655,699 - Psyr_1468 0.11 -1.3 1,655,707 - Psyr_1468 0.13 -0.5 1,655,720 + Psyr_1468 0.17 -2.4 1,655,720 + Psyr_1468 0.17 -0.4 1,655,720 + Psyr_1468 0.17 -1.0 1,655,721 - Psyr_1468 0.17 +0.4 1,655,745 - Psyr_1468 0.23 -0.7 1,655,793 + Psyr_1468 0.37 -0.9 1,655,793 + Psyr_1468 0.37 +0.3 1,655,794 - Psyr_1468 0.37 +0.4 1,655,807 + Psyr_1468 0.40 +0.2 1,655,808 - Psyr_1468 0.41 -0.3 1,655,891 - Psyr_1468 0.64 -1.2 1,655,995 + +1.8 1,655,995 + +0.7 1,655,995 + +0.8 1,655,995 + -0.8 1,655,995 + -1.8 1,655,995 + +1.5 1,655,995 + +1.2 1,655,995 + +0.8 1,655,996 - +1.4 1,655,996 - +0.4 1,655,996 - +2.1 1,655,996 - +2.6 1,655,996 - +3.4 1,655,996 - -2.7 1,655,996 - +1.5 1,655,996 - -2.2 1,655,996 - +0.4 1,655,998 + +0.8 1,655,998 + -0.9 1,655,998 + +0.1 1,655,998 + +0.7 1,655,998 + -2.7 1,655,998 + +1.0 1,655,998 + -1.2 1,655,998 + +0.8 1,655,999 - -1.5 1,655,999 - +1.0 1,655,999 - -0.0 1,655,999 - -0.2 1,655,999 - -2.0 1,655,999 - -2.4 1,655,999 - +0.6 1,655,999 - +2.4 1,655,999 - -0.6 1,656,121 + Psyr_1469 0.12 +0.1 1,656,122 - Psyr_1469 0.12 +0.1 1,656,122 - Psyr_1469 0.12 +0.4 1,656,123 + Psyr_1469 0.12 -1.4 1,656,123 + Psyr_1469 0.12 -1.2 1,656,123 + Psyr_1469 0.12 -1.6 1,656,123 + Psyr_1469 0.12 -0.9 1,656,123 + Psyr_1469 0.12 -1.7 1,656,123 + Psyr_1469 0.12 -1.7 1,656,123 + Psyr_1469 0.12 +0.3 1,656,123 + Psyr_1469 0.12 +0.8 1,656,123 + Psyr_1469 0.12 +0.3 1,656,123 + Psyr_1469 0.12 -2.2 1,656,123 + Psyr_1469 0.12 -1.6 1,656,123 + Psyr_1469 0.12 +0.3 1,656,123 + Psyr_1469 0.12 -1.2 1,656,123 + Psyr_1469 0.12 +0.2 1,656,123 + Psyr_1469 0.12 -2.0 1,656,124 - Psyr_1469 0.13 -1.2 1,656,124 - Psyr_1469 0.13 +0.1 1,656,124 - Psyr_1469 0.13 -0.0 1,656,124 - Psyr_1469 0.13 -0.0 1,656,124 - Psyr_1469 0.13 -0.3 1,656,124 - Psyr_1469 0.13 -0.6 1,656,124 - Psyr_1469 0.13 -0.6 1,656,124 - Psyr_1469 0.13 -0.6 1,656,124 - Psyr_1469 0.13 -0.5 1,656,124 - Psyr_1469 0.13 +2.4 1,656,124 - Psyr_1469 0.13 +2.4 1,656,124 - Psyr_1469 0.13 +1.0 1,656,124 - Psyr_1469 0.13 +0.2 1,656,124 - +0.8 1,656,124 - Psyr_1469 0.13 -1.0 1,656,124 - Psyr_1469 0.13 +1.7 1,656,124 - Psyr_1469 0.13 +0.4 1,656,124 - Psyr_1469 0.13 +0.8 1,656,124 - Psyr_1469 0.13 +0.1 1,656,124 - Psyr_1469 0.13 -0.0 1,656,124 - Psyr_1469 0.13 +1.2 1,656,124 - Psyr_1469 0.13 +0.1 1,656,124 - Psyr_1469 0.13 +1.2 1,656,124 - Psyr_1469 0.13 -0.1 1,656,124 - Psyr_1469 0.13 -1.0 1,656,124 - Psyr_1469 0.13 -0.1 1,656,124 - Psyr_1469 0.13 -0.7 1,656,125 + +0.8 1,656,125 + Psyr_1469 0.13 -1.2 1,656,125 + Psyr_1469 0.13 -2.6 1,656,125 + Psyr_1469 0.13 +0.4 1,656,125 + Psyr_1469 0.13 -0.9 1,656,125 + Psyr_1469 0.13 -0.6 1,656,125 + Psyr_1469 0.13 +1.5 1,656,125 + Psyr_1469 0.13 -0.2 1,656,125 + Psyr_1469 0.13 +0.6 1,656,126 - Psyr_1469 0.13 +0.4 1,656,126 - Psyr_1469 0.13 +1.4 1,656,126 - Psyr_1469 0.13 +0.8 1,656,126 - Psyr_1469 0.13 +0.1 1,656,126 - Psyr_1469 0.13 -2.2 1,656,126 - Psyr_1469 0.13 -3.0 1,656,126 - Psyr_1469 0.13 -0.2 1,656,126 - Psyr_1469 0.13 +0.4 1,656,126 - Psyr_1469 0.13 +0.5 1,656,126 - Psyr_1469 0.13 -0.6 1,656,126 - Psyr_1469 0.13 -0.3 1,656,158 - Psyr_1469 0.23 -1.2 1,656,187 + Psyr_1469 0.32 +0.3 1,656,187 + Psyr_1469 0.32 -0.1 1,656,187 + Psyr_1469 0.32 -0.1 1,656,188 - Psyr_1469 0.33 +0.4 1,656,188 - Psyr_1469 0.33 -0.7 1,656,188 - Psyr_1469 0.33 +0.4 1,656,188 - Psyr_1469 0.33 -0.2 1,656,188 - Psyr_1469 0.33 +0.9 1,656,188 - Psyr_1469 0.33 +0.2 1,656,269 - Psyr_1469 0.58 +0.5 1,656,320 - Psyr_1469 0.74 -0.2 1,656,320 - Psyr_1469 0.74 +1.8 1,656,320 - Psyr_1469 0.74 -2.0 1,656,323 + Psyr_1469 0.75 -0.1 1,656,323 + Psyr_1469 0.75 +0.8 1,656,326 + Psyr_1469 0.76 +1.0 1,656,378 + -0.2 1,656,379 - -0.3 1,656,383 + -0.2 1,656,383 + +1.8 1,656,386 + -0.6 1,656,389 + -0.3 1,656,390 - +1.3 1,656,414 - +0.5 1,656,415 + -0.5 1,656,416 - +0.1 1,656,416 - +0.5 1,656,459 - +0.7 1,656,467 + +1.2 1,656,468 - +0.8 1,656,468 - -0.5 1,656,490 - +0.0 1,656,490 - -1.0 1,656,544 + +0.1 1,656,597 + +0.3 1,656,640 + +1.0 1,656,641 - -0.1 1,656,687 + -0.5 1,656,697 - -0.8 1,656,754 + +0.3 1,656,763 + Psyr_1470 0.11 +2.2 1,656,894 + Psyr_1470 0.34 +0.9 1,656,894 + Psyr_1470 0.34 -0.0 1,656,894 + Psyr_1470 0.34 -0.6 1,656,894 + Psyr_1470 0.34 -1.1 1,656,894 + Psyr_1470 0.34 -0.1 1,656,894 + Psyr_1470 0.34 -0.8 1,656,894 + Psyr_1470 0.34 +0.2 1,656,895 - Psyr_1470 0.34 -0.9 1,656,895 - Psyr_1470 0.34 +0.1 1,656,895 - Psyr_1470 0.34 +0.6 1,656,895 - Psyr_1470 0.34 +0.5 1,656,895 - Psyr_1470 0.34 +0.8 1,656,895 - Psyr_1470 0.34 -1.1 1,656,895 - Psyr_1470 0.34 -0.7 1,656,924 + Psyr_1470 0.39 -0.3 1,656,924 + Psyr_1470 0.39 -0.1 1,656,925 - Psyr_1470 0.40 +0.4 1,656,967 + Psyr_1470 0.47 -2.4 1,656,967 + Psyr_1470 0.47 +1.6 1,656,968 - Psyr_1470 0.47 -0.2 1,656,981 + Psyr_1470 0.49 +0.5 1,656,982 - Psyr_1470 0.50 -0.0 1,656,982 - Psyr_1470 0.50 -0.2 1,656,982 - Psyr_1470 0.50 -0.7 1,656,982 - Psyr_1470 0.50 -0.3 1,656,982 - Psyr_1470 0.50 +0.0 1,656,982 - Psyr_1470 0.50 +0.6 1,656,982 - Psyr_1470 0.50 +0.8 1,656,982 - Psyr_1470 0.50 -0.3 1,656,986 - Psyr_1470 0.50 -0.5
Or see this region's nucleotide sequence