Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1157

Experiment: KB with Quercetin 360 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Quercetin 360 ug/ml
1,307,927	+		Psyr_1156	0.58	-1.8
1,308,103	+		Psyr_1156	0.68	-0.1
1,308,128	+		Psyr_1156	0.70	-2.2
1,308,155	+		Psyr_1156	0.71	-0.5
1,308,224	+		Psyr_1156	0.75	+3.1
1,308,224	+		Psyr_1156	0.75	-1.5
1,308,224	+		Psyr_1156	0.75	-1.3
1,308,224	+		Psyr_1156	0.75	+0.2
1,308,224	+		Psyr_1156	0.75	-0.8
1,308,224	+		Psyr_1156	0.75	+0.8
1,308,224	+		Psyr_1156	0.75	+1.3
1,308,225	-		Psyr_1156	0.75	+0.6
1,308,368	+		Psyr_1156	0.84	+0.2
1,308,390	-		Psyr_1156	0.85	+1.3
1,308,390	-		Psyr_1156	0.85	-0.5
1,308,545	+				+0.4
1,308,545	+				-0.6
1,308,545	+				+1.0
1,308,545	+				-0.9
1,308,546	-				-0.2
1,308,546	-				-1.0
1,308,557	-				-1.2
1,308,740	+				-1.5
1,308,740	+				+0.1
1,308,740	+				+1.8
1,309,147	+		Psyr_1157	0.32	+0.1
1,309,148	-		Psyr_1157	0.33	-0.4
1,309,148	-		Psyr_1157	0.33	+0.3
1,309,164	+		Psyr_1157	0.34	-0.3
1,309,165	-		Psyr_1157	0.34	-1.3
1,309,165	-		Psyr_1157	0.34	-0.8
1,309,165	-		Psyr_1157	0.34	-0.6
1,309,165	-		Psyr_1157	0.34	-1.5
1,309,277	+		Psyr_1157	0.43	-0.9
1,309,278	-		Psyr_1157	0.43	+4.1
1,309,302	+		Psyr_1157	0.45	+0.1
1,309,302	+		Psyr_1157	0.45	-1.1
1,309,303	-		Psyr_1157	0.45	+0.3
1,309,303	-		Psyr_1157	0.45	+1.4
1,309,331	+		Psyr_1157	0.47	-1.1
1,309,331	+		Psyr_1157	0.47	-0.8
1,309,331	+		Psyr_1157	0.47	-1.0
1,309,331	+		Psyr_1157	0.47	+1.0
1,309,332	-		Psyr_1157	0.47	-0.0
1,309,415	+		Psyr_1157	0.54	-0.7
1,309,415	+		Psyr_1157	0.54	+0.8
1,309,415	+		Psyr_1157	0.54	-0.4
1,309,415	+		Psyr_1157	0.54	-0.8
1,309,415	+		Psyr_1157	0.54	+1.5
1,309,416	-		Psyr_1157	0.54	-0.7
1,309,416	-		Psyr_1157	0.54	+0.8
1,309,416	-		Psyr_1157	0.54	-1.3
1,309,416	-		Psyr_1157	0.54	+0.5
1,309,416	-		Psyr_1157	0.54	-0.9
1,309,416	-		Psyr_1157	0.54	-2.2
1,309,548	+		Psyr_1157	0.64	+1.4
1,309,700	+		Psyr_1157	0.76	-0.2
1,309,700	+		Psyr_1157	0.76	-1.0
1,309,700	+		Psyr_1157	0.76	+0.7
1,309,700	+		Psyr_1157	0.76	-0.4
1,309,700	+		Psyr_1157	0.76	-0.2
1,309,700	+		Psyr_1157	0.76	-0.5
1,309,700	+		Psyr_1157	0.76	+0.9
1,309,700	+		Psyr_1157	0.76	+0.4
1,309,701	-		Psyr_1157	0.77	+0.8
1,309,701	-		Psyr_1157	0.77	+0.2
1,309,701	-		Psyr_1157	0.77	-1.9
1,309,701	-		Psyr_1157	0.77	-1.1
1,309,701	-		Psyr_1157	0.77	+1.0
1,309,701	-		Psyr_1157	0.77	+0.9
1,309,701	-		Psyr_1157	0.77	+2.3
1,309,701	-		Psyr_1157	0.77	-1.2
1,309,701	-		Psyr_1157	0.77	-1.3
1,309,883	+				+0.5
1,309,883	+				+0.5
1,309,883	+				+2.7
1,309,884	-				+4.2
1,309,884	-				+0.5
1,310,044	+				-0.8
1,310,044	+				-0.3
1,310,045	-				-3.1
1,310,045	-				-0.1
1,310,045	-				+2.3
1,310,045	-				+0.9
1,310,045	-				+0.5
1,310,123	+				-1.0
1,310,123	+				-0.2
1,310,123	+				+0.8
1,310,123	+				-0.2
1,310,123	+				-2.3
1,310,125	+				-0.4
1,310,125	+				-1.7
1,310,125	+				-0.4
1,310,125	+				-0.4
1,310,125	+				+0.2
1,310,125	+				-3.7
1,310,126	-				+0.8
1,310,126	-				+0.1
1,310,126	-				+0.8
1,310,126	-				-0.6
1,310,126	-				-1.4
1,310,126	-				-1.3
1,310,126	-				-0.7
1,310,126	-				+2.3
1,310,126	-				+0.9
1,310,137	+				+2.1
1,310,137	+				+0.5
1,310,138	-				+1.6
1,310,173	+				-1.2
1,310,173	+				+0.6
1,310,173	+				+0.8
1,310,173	+				+3.1
1,310,173	+				+0.5
1,310,173	+				+0.3
1,310,174	-				+0.5
1,310,193	+				-0.7
1,310,193	+				+0.1
1,310,193	+				+0.1
1,310,193	+				+0.4
1,310,194	-				-0.0
1,310,194	-				-0.1
1,310,194	-				-0.6
1,310,197	-				+0.1
1,310,244	+				+0.4
1,310,363	-				-0.9
1,310,930	+		Psyr_1158	0.45	-1.1