Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0958

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0956 and Psyr_0957 overlap by 14 nucleotidesPsyr_0957 and Psyr_0958 overlap by 4 nucleotidesPsyr_0958 and Psyr_0959 overlap by 4 nucleotidesPsyr_0959 and Psyr_0960 overlap by 4 nucleotides Psyr_0956: Psyr_0956 - Cyclopropane-fatty-acyl-phospholipid synthase, at 1,090,142 to 1,091,410 _0956 Psyr_0957: Psyr_0957 - Protein of unknown function DUF1365, at 1,091,397 to 1,092,197 _0957 Psyr_0958: Psyr_0958 - amine oxidase, flavin-containing, at 1,092,194 to 1,093,441 _0958 Psyr_0959: Psyr_0959 - Short-chain dehydrogenase/reductase SDR, at 1,093,438 to 1,094,226 _0959 Psyr_0960: Psyr_0960 - conserved hypothetical protein, at 1,094,223 to 1,094,645 _0960 Position (kb) 1092 1093 1094Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1091.393 kb on - strandat 1091.393 kb on - strandat 1091.393 kb on - strandat 1091.481 kb on + strand, within Psyr_0957at 1091.482 kb on - strand, within Psyr_0957at 1091.515 kb on + strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.564 kb on - strand, within Psyr_0957at 1091.564 kb on - strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.811 kb on - strand, within Psyr_0957at 1092.016 kb on + strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.081 kb on + strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.109 kb on + strand, within Psyr_0957at 1092.127 kb on + strandat 1092.128 kb on - strandat 1092.181 kb on + strandat 1092.282 kb on + strandat 1092.282 kb on + strandat 1092.283 kb on - strandat 1092.348 kb on + strand, within Psyr_0958at 1092.349 kb on - strand, within Psyr_0958at 1092.363 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.510 kb on + strand, within Psyr_0958at 1092.589 kb on - strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.181 kb on + strand, within Psyr_0958at 1093.229 kb on + strand, within Psyr_0958at 1093.330 kb on + strandat 1093.331 kb on - strandat 1093.392 kb on + strandat 1093.392 kb on + strandat 1093.393 kb on - strandat 1093.599 kb on + strand, within Psyr_0959at 1093.599 kb on + strand, within Psyr_0959at 1093.799 kb on + strand, within Psyr_0959at 1093.800 kb on - strand, within Psyr_0959at 1093.877 kb on + strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1094.281 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.321 kb on - strand, within Psyr_0960at 1094.398 kb on + strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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1,091,393 - -0.8
1,091,393 - +0.1
1,091,393 - +0.4
1,091,481 + Psyr_0957 0.10 +0.6
1,091,482 - Psyr_0957 0.11 -1.8
1,091,515 + Psyr_0957 0.15 +0.3
1,091,516 - Psyr_0957 0.15 +1.5
1,091,564 - Psyr_0957 0.21 -0.4
1,091,564 - Psyr_0957 0.21 +0.6
1,091,655 + Psyr_0957 0.32 +0.7
1,091,655 + Psyr_0957 0.32 -0.2
1,091,655 + Psyr_0957 0.32 -0.9
1,091,655 + Psyr_0957 0.32 +0.7
1,091,655 + Psyr_0957 0.32 -2.6
1,091,655 + Psyr_0957 0.32 +0.1
1,091,656 - Psyr_0957 0.32 -0.2
1,091,656 - Psyr_0957 0.32 -2.6
1,091,656 - Psyr_0957 0.32 -0.2
1,091,785 + Psyr_0957 0.48 -1.3
1,091,785 + Psyr_0957 0.48 -0.4
1,091,785 + Psyr_0957 0.48 -1.2
1,091,785 + Psyr_0957 0.48 +0.4
1,091,785 + Psyr_0957 0.48 +0.8
1,091,785 + Psyr_0957 0.48 -0.3
1,091,785 + Psyr_0957 0.48 -1.0
1,091,785 + Psyr_0957 0.48 -0.0
1,091,785 + Psyr_0957 0.48 -1.1
1,091,785 + Psyr_0957 0.48 -0.8
1,091,785 + Psyr_0957 0.48 -0.5
1,091,785 + Psyr_0957 0.48 -2.0
1,091,785 + Psyr_0957 0.48 +2.8
1,091,785 + Psyr_0957 0.48 +0.2
1,091,785 + Psyr_0957 0.48 -2.2
1,091,785 + Psyr_0957 0.48 -0.2
1,091,785 + Psyr_0957 0.48 +0.8
1,091,785 + Psyr_0957 0.48 +2.0
1,091,786 - Psyr_0957 0.49 +0.1
1,091,786 - Psyr_0957 0.49 +1.3
1,091,786 - Psyr_0957 0.49 -1.1
1,091,786 - Psyr_0957 0.49 +0.4
1,091,786 - Psyr_0957 0.49 +0.7
1,091,786 - Psyr_0957 0.49 +0.6
1,091,786 - Psyr_0957 0.49 -0.5
1,091,786 - Psyr_0957 0.49 -0.6
1,091,786 - Psyr_0957 0.49 +0.5
1,091,786 - Psyr_0957 0.49 +0.5
1,091,786 - Psyr_0957 0.49 +1.2
1,091,786 - Psyr_0957 0.49 +0.7
1,091,786 - Psyr_0957 0.49 +0.1
1,091,786 - Psyr_0957 0.49 +0.3
1,091,811 - Psyr_0957 0.52 +0.1
1,092,016 + Psyr_0957 0.77 -0.2
1,092,017 - Psyr_0957 0.77 -0.4
1,092,017 - Psyr_0957 0.77 -0.6
1,092,081 + Psyr_0957 0.85 -2.5
1,092,082 - Psyr_0957 0.86 +1.2
1,092,082 - Psyr_0957 0.86 +1.0
1,092,082 - Psyr_0957 0.86 +0.8
1,092,109 + Psyr_0957 0.89 +0.2
1,092,127 + +0.3
1,092,128 - +1.0
1,092,181 + -2.0
1,092,282 + +0.7
1,092,282 + +0.7
1,092,283 - +0.0
1,092,348 + Psyr_0958 0.12 +0.8
1,092,349 - Psyr_0958 0.12 +4.1
1,092,363 + Psyr_0958 0.14 +1.9
1,092,468 + Psyr_0958 0.22 -0.4
1,092,468 + Psyr_0958 0.22 +0.8
1,092,468 + Psyr_0958 0.22 +0.1
1,092,468 + Psyr_0958 0.22 -0.7
1,092,468 + Psyr_0958 0.22 -0.3
1,092,468 + Psyr_0958 0.22 +0.4
1,092,469 - Psyr_0958 0.22 +1.8
1,092,469 - Psyr_0958 0.22 +0.1
1,092,469 - Psyr_0958 0.22 +1.3
1,092,469 - Psyr_0958 0.22 +1.3
1,092,469 - Psyr_0958 0.22 -0.5
1,092,469 - Psyr_0958 0.22 -0.1
1,092,469 - Psyr_0958 0.22 +1.7
1,092,469 - Psyr_0958 0.22 -0.6
1,092,469 - Psyr_0958 0.22 -0.2
1,092,510 + Psyr_0958 0.25 +0.4
1,092,589 - Psyr_0958 0.32 +0.3
1,092,801 + Psyr_0958 0.49 +0.5
1,092,801 + Psyr_0958 0.49 +1.4
1,092,801 + Psyr_0958 0.49 +1.8
1,092,801 + Psyr_0958 0.49 -0.6
1,092,801 + Psyr_0958 0.49 -0.0
1,092,802 - Psyr_0958 0.49 +0.8
1,092,957 + Psyr_0958 0.61 -0.2
1,092,957 + Psyr_0958 0.61 -0.4
1,092,957 + Psyr_0958 0.61 -2.2
1,092,957 + Psyr_0958 0.61 -1.1
1,092,957 + Psyr_0958 0.61 -0.2
1,092,957 + Psyr_0958 0.61 -0.3
1,092,957 + Psyr_0958 0.61 +0.2
1,092,957 + Psyr_0958 0.61 -1.3
1,092,957 + Psyr_0958 0.61 +0.0
1,092,957 + Psyr_0958 0.61 -1.0
1,092,958 - Psyr_0958 0.61 -0.2
1,092,958 - Psyr_0958 0.61 -0.2
1,092,958 - Psyr_0958 0.61 -0.2
1,092,958 - Psyr_0958 0.61 -0.9
1,092,958 - Psyr_0958 0.61 +0.6
1,092,958 - Psyr_0958 0.61 +0.0
1,092,958 - Psyr_0958 0.61 +0.9
1,093,153 + Psyr_0958 0.77 +1.3
1,093,153 + Psyr_0958 0.77 -0.6
1,093,154 - Psyr_0958 0.77 +3.0
1,093,154 - Psyr_0958 0.77 +1.0
1,093,155 + Psyr_0958 0.77 -1.2
1,093,155 + Psyr_0958 0.77 +0.0
1,093,155 + Psyr_0958 0.77 -1.3
1,093,155 + Psyr_0958 0.77 +1.3
1,093,155 + Psyr_0958 0.77 +0.2
1,093,156 - Psyr_0958 0.77 +0.6
1,093,156 - Psyr_0958 0.77 +0.8
1,093,181 + Psyr_0958 0.79 -0.4
1,093,229 + Psyr_0958 0.83 -1.1
1,093,330 + -2.2
1,093,331 - -0.8
1,093,392 + +0.3
1,093,392 + +0.4
1,093,393 - -0.9
1,093,599 + Psyr_0959 0.20 +3.6
1,093,599 + Psyr_0959 0.20 -0.8
1,093,799 + Psyr_0959 0.46 -0.8
1,093,800 - Psyr_0959 0.46 -0.5
1,093,877 + Psyr_0959 0.56 +0.3
1,093,878 - Psyr_0959 0.56 +0.1
1,093,878 - Psyr_0959 0.56 -0.0
1,093,949 + Psyr_0959 0.65 +0.5
1,093,949 + Psyr_0959 0.65 -0.4
1,093,949 + Psyr_0959 0.65 -0.5
1,093,949 + Psyr_0959 0.65 -0.0
1,093,949 + Psyr_0959 0.65 -2.2
1,093,950 - Psyr_0959 0.65 -0.2
1,093,950 - Psyr_0959 0.65 -1.9
1,093,950 - Psyr_0959 0.65 -0.8
1,094,281 + Psyr_0960 0.14 -0.3
1,094,305 + Psyr_0960 0.19 +0.0
1,094,305 + Psyr_0960 0.19 +0.7
1,094,321 - Psyr_0960 0.23 -0.6
1,094,398 + Psyr_0960 0.41 -1.1
1,094,399 - Psyr_0960 0.42 -0.0
1,094,399 - Psyr_0960 0.42 +0.4
1,094,399 - Psyr_0960 0.42 -0.0
1,094,399 - Psyr_0960 0.42 -0.0
1,094,419 + Psyr_0960 0.46 -2.0
1,094,419 + Psyr_0960 0.46 -2.2
1,094,420 - Psyr_0960 0.47 +1.7
1,094,420 - Psyr_0960 0.47 -0.1

Or see this region's nucleotide sequence