Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0843 and Psyr_0844 overlap by 1 nucleotides Psyr_0844 and Psyr_0845 are separated by 11 nucleotides Psyr_0845 and Psyr_0846 are separated by 397 nucleotides
Psyr_0843: Psyr_0843 - TPR repeat protein, at 956,274 to 957,017
_0843
Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346
_0844
Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774
_0845
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Position (kb) 957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 956.482 kb on + strand, within Psyr_0843 at 956.482 kb on + strand, within Psyr_0843 at 956.483 kb on - strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.829 kb on + strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 957.030 kb on + strand at 957.031 kb on - strand at 957.031 kb on - strand at 957.060 kb on + strand, within Psyr_0844 at 957.060 kb on + strand, within Psyr_0844 at 957.061 kb on - strand, within Psyr_0844 at 957.061 kb on - strand, within Psyr_0844 at 957.266 kb on + strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.360 kb on - strand at 957.369 kb on - strand at 957.369 kb on - strand at 957.710 kb on + strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.809 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.924 kb on + strand at 957.924 kb on + strand at 957.956 kb on - strand at 957.956 kb on - strand at 957.987 kb on + strand at 958.004 kb on + strand at 958.052 kb on + strand at 958.052 kb on + strand at 958.053 kb on - strand at 958.053 kb on - strand at 958.075 kb on + strand at 958.075 kb on + strand at 958.113 kb on - strand at 958.113 kb on - strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.158 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.183 kb on - strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.271 kb on + strand at 958.272 kb on - strand at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.486 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.692 kb on - strand, within Psyr_0846
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 956,482 + Psyr_0843 0.28 +1.3 956,482 + Psyr_0843 0.28 -0.5 956,483 - Psyr_0843 0.28 -0.9 956,526 + Psyr_0843 0.34 -1.6 956,526 + Psyr_0843 0.34 -1.8 956,526 + Psyr_0843 0.34 -0.1 956,526 + Psyr_0843 0.34 -1.2 956,526 + Psyr_0843 0.34 -1.0 956,526 + Psyr_0843 0.34 -0.5 956,527 - Psyr_0843 0.34 +1.5 956,527 - Psyr_0843 0.34 +0.3 956,527 - Psyr_0843 0.34 +0.1 956,527 - Psyr_0843 0.34 +0.6 956,631 + Psyr_0843 0.48 -0.9 956,631 + Psyr_0843 0.48 -2.2 956,631 + Psyr_0843 0.48 +0.5 956,631 + Psyr_0843 0.48 +0.1 956,631 + Psyr_0843 0.48 +1.2 956,632 - Psyr_0843 0.48 -1.0 956,632 - Psyr_0843 0.48 +0.5 956,632 - Psyr_0843 0.48 -0.2 956,632 - Psyr_0843 0.48 +2.2 956,632 - Psyr_0843 0.48 -0.6 956,829 + Psyr_0843 0.75 -1.3 956,905 - Psyr_0843 0.85 +1.4 956,905 - Psyr_0843 0.85 +0.3 956,905 - Psyr_0843 0.85 -1.7 956,905 - Psyr_0843 0.85 +0.5 956,905 - Psyr_0843 0.85 -0.5 957,030 + +0.7 957,031 - +0.3 957,031 - +0.4 957,060 + Psyr_0844 0.13 +0.5 957,060 + Psyr_0844 0.13 +0.3 957,061 - Psyr_0844 0.13 +0.7 957,061 - Psyr_0844 0.13 +3.0 957,266 + Psyr_0844 0.75 +1.4 957,267 - Psyr_0844 0.76 -0.5 957,267 - Psyr_0844 0.76 +0.4 957,267 - Psyr_0844 0.76 +0.6 957,267 - Psyr_0844 0.76 +0.9 957,360 - -0.3 957,369 - -0.6 957,369 - -1.1 957,710 + Psyr_0845 0.84 -0.2 957,711 - Psyr_0845 0.85 -0.9 957,711 - Psyr_0845 0.85 -1.7 957,711 - Psyr_0845 0.85 -0.3 957,809 + +2.3 957,814 + +2.8 957,814 + -2.0 957,814 + -1.0 957,814 + +0.3 957,814 + -0.3 957,814 + -0.9 957,814 + -1.6 957,924 + +0.1 957,924 + -0.3 957,956 - +2.1 957,956 - +0.6 957,987 + +0.2 958,004 + +0.5 958,052 + -1.0 958,052 + -0.4 958,053 - +0.7 958,053 - -0.5 958,075 + +0.4 958,075 + +0.7 958,113 - -2.5 958,113 - -1.5 958,118 + -2.2 958,118 + +0.2 958,118 + +0.8 958,118 + -1.3 958,118 + -1.4 958,119 - +0.4 958,119 - +0.4 958,119 - -2.5 958,119 - -0.9 958,119 - -0.2 958,121 + +0.1 958,121 + -0.4 958,121 + -0.6 958,158 + +0.8 958,182 + -0.4 958,182 + -1.7 958,182 + +0.0 958,183 - +0.8 958,234 + -0.3 958,234 + -1.3 958,234 + -1.2 958,234 + -3.0 958,234 + +0.8 958,234 + -0.3 958,234 + -1.2 958,234 + -1.2 958,234 + -0.5 958,235 - -0.9 958,235 - -0.4 958,235 - -1.6 958,235 - +0.4 958,235 - +0.3 958,235 - -1.5 958,235 - -0.3 958,235 - -0.1 958,238 + -0.3 958,238 + -2.3 958,238 + -0.8 958,238 + -0.7 958,238 + -0.0 958,238 + -1.5 958,238 + +0.0 958,238 + -0.6 958,238 + -0.2 958,239 - -0.9 958,239 - +1.4 958,239 - +0.2 958,239 - -0.1 958,239 - -0.5 958,239 - -0.8 958,239 - +1.1 958,239 - -0.3 958,239 - -0.3 958,239 - +0.0 958,239 - -0.5 958,239 - -0.2 958,271 + +0.0 958,272 - -0.4 958,439 + Psyr_0846 0.15 -1.4 958,439 + Psyr_0846 0.15 -1.6 958,439 + Psyr_0846 0.15 -0.2 958,439 + Psyr_0846 0.15 +0.1 958,439 + Psyr_0846 0.15 +0.1 958,440 - Psyr_0846 0.16 +0.7 958,440 - Psyr_0846 0.16 -0.9 958,440 - Psyr_0846 0.16 -0.5 958,440 - Psyr_0846 0.16 -0.5 958,486 + Psyr_0846 0.18 -1.0 958,610 + Psyr_0846 0.25 +1.8 958,610 + Psyr_0846 0.25 -0.7 958,611 - Psyr_0846 0.25 +2.4 958,611 - Psyr_0846 0.25 -0.1 958,611 - Psyr_0846 0.25 -1.5 958,611 - Psyr_0846 0.25 +0.1 958,611 - Psyr_0846 0.25 -0.0 958,691 + Psyr_0846 0.30 +0.8 958,691 + Psyr_0846 0.30 -0.9 958,691 + Psyr_0846 0.30 +1.0 958,692 - Psyr_0846 0.30 -0.6
Or see this region's nucleotide sequence