Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0423 and Psyr_0424 overlap by 4 nucleotides Psyr_0424 and Psyr_0425 overlap by 4 nucleotides Psyr_0425 and Psyr_0426 overlap by 4 nucleotides Psyr_0426 and Psyr_0427 overlap by 4 nucleotides
Psyr_0423: Psyr_0423 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 462,773 to 463,501
_0423
Psyr_0424: Psyr_0424 - conserved hypothetical protein, at 463,498 to 463,953
_0424
Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146
_0425
Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625
_0426
Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356
_0427
Position (kb)
463
464
465
466 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 463.022 kb on - strand, within Psyr_0423 at 463.044 kb on + strand, within Psyr_0423 at 463.044 kb on + strand, within Psyr_0423 at 463.045 kb on - strand, within Psyr_0423 at 463.112 kb on - strand, within Psyr_0423 at 463.153 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.258 kb on - strand, within Psyr_0423 at 463.260 kb on + strand, within Psyr_0423 at 463.261 kb on - strand, within Psyr_0423 at 463.523 kb on + strand at 463.547 kb on + strand, within Psyr_0424 at 463.548 kb on - strand, within Psyr_0424 at 463.548 kb on - strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 464.017 kb on + strand at 464.017 kb on + strand at 464.018 kb on - strand at 464.018 kb on - strand at 464.018 kb on - strand at 464.239 kb on - strand, within Psyr_0425 at 464.239 kb on - strand, within Psyr_0425 at 464.305 kb on + strand, within Psyr_0425 at 464.495 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.696 kb on - strand, within Psyr_0425 at 465.136 kb on + strand at 465.137 kb on - strand at 465.137 kb on - strand at 465.173 kb on - strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.228 kb on + strand, within Psyr_0426 at 465.614 kb on + strand at 465.758 kb on + strand, within Psyr_0427 at 465.758 kb on + strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.818 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 466.066 kb on + strand, within Psyr_0427
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 463,022 - Psyr_0423 0.34 +0.8 463,044 + Psyr_0423 0.37 -0.2 463,044 + Psyr_0423 0.37 +1.5 463,045 - Psyr_0423 0.37 +0.1 463,112 - Psyr_0423 0.47 +1.7 463,153 + Psyr_0423 0.52 -0.9 463,155 + Psyr_0423 0.52 +0.5 463,155 + Psyr_0423 0.52 +0.6 463,155 + Psyr_0423 0.52 +0.1 463,155 + Psyr_0423 0.52 -0.3 463,155 + Psyr_0423 0.52 +1.1 463,155 + Psyr_0423 0.52 +0.6 463,156 - Psyr_0423 0.53 -0.1 463,156 - Psyr_0423 0.53 -1.2 463,156 - Psyr_0423 0.53 +0.2 463,156 - Psyr_0423 0.53 +0.9 463,156 - Psyr_0423 0.53 +0.5 463,156 - Psyr_0423 0.53 -2.1 463,156 - Psyr_0423 0.53 -0.3 463,156 - Psyr_0423 0.53 -2.4 463,156 - Psyr_0423 0.53 -0.3 463,258 - Psyr_0423 0.67 -0.6 463,260 + Psyr_0423 0.67 +1.4 463,261 - Psyr_0423 0.67 +1.1 463,523 + +0.9 463,547 + Psyr_0424 0.11 +0.1 463,548 - Psyr_0424 0.11 -0.8 463,548 - Psyr_0424 0.11 -1.0 463,549 + Psyr_0424 0.11 +0.8 463,549 + Psyr_0424 0.11 -0.4 463,549 + Psyr_0424 0.11 -0.8 463,549 + Psyr_0424 0.11 +1.1 463,549 + Psyr_0424 0.11 +0.1 463,549 + Psyr_0424 0.11 -0.7 463,549 + Psyr_0424 0.11 -0.5 463,549 + Psyr_0424 0.11 -0.6 463,549 + Psyr_0424 0.11 +1.1 463,549 + Psyr_0424 0.11 +0.1 463,549 + Psyr_0424 0.11 +0.3 463,549 + Psyr_0424 0.11 -0.1 463,549 + Psyr_0424 0.11 -1.9 463,549 + Psyr_0424 0.11 +0.5 463,549 + Psyr_0424 0.11 +0.3 463,549 + Psyr_0424 0.11 +1.3 463,549 + Psyr_0424 0.11 +0.1 463,549 + Psyr_0424 0.11 +0.4 463,549 + Psyr_0424 0.11 -0.3 463,549 + Psyr_0424 0.11 -0.1 463,549 + Psyr_0424 0.11 -0.0 463,549 + Psyr_0424 0.11 -0.2 463,550 - Psyr_0424 0.11 -0.8 463,550 - Psyr_0424 0.11 +1.0 463,550 - Psyr_0424 0.11 -0.2 463,550 - Psyr_0424 0.11 -0.3 463,550 - Psyr_0424 0.11 +0.2 463,550 - Psyr_0424 0.11 -0.2 463,550 - Psyr_0424 0.11 -1.3 463,550 - Psyr_0424 0.11 +0.2 463,550 - Psyr_0424 0.11 +0.8 463,550 - Psyr_0424 0.11 +0.0 463,550 - Psyr_0424 0.11 -1.0 463,550 - Psyr_0424 0.11 -1.6 463,550 - Psyr_0424 0.11 +0.5 463,550 - Psyr_0424 0.11 +0.8 463,550 - Psyr_0424 0.11 +0.1 463,550 - Psyr_0424 0.11 +0.2 463,550 - Psyr_0424 0.11 -0.2 463,550 - Psyr_0424 0.11 -0.5 464,017 + -0.9 464,017 + +0.2 464,018 - +0.8 464,018 - -2.9 464,018 - -0.4 464,239 - Psyr_0425 0.24 +0.9 464,239 - Psyr_0425 0.24 +1.6 464,305 + Psyr_0425 0.30 +0.8 464,495 + Psyr_0425 0.46 -1.0 464,695 + Psyr_0425 0.62 -0.5 464,695 + Psyr_0425 0.62 +1.7 464,696 - Psyr_0425 0.62 +1.5 465,136 + +1.7 465,137 - +0.8 465,137 - +0.0 465,173 - +1.1 465,180 + +1.6 465,180 + -2.5 465,180 + +0.7 465,181 - -0.7 465,181 - -0.1 465,181 - +0.2 465,181 - -0.2 465,181 - -1.1 465,228 + Psyr_0426 0.18 +0.7 465,614 + -0.3 465,758 + Psyr_0427 0.19 +0.4 465,758 + Psyr_0427 0.19 +0.1 465,759 - Psyr_0427 0.19 -0.6 465,759 - Psyr_0427 0.19 -1.1 465,818 + Psyr_0427 0.27 +0.9 465,887 + Psyr_0427 0.36 +0.3 465,887 + Psyr_0427 0.36 +0.4 465,887 + Psyr_0427 0.36 +0.9 465,887 + Psyr_0427 0.36 +0.9 465,887 + Psyr_0427 0.36 -1.9 465,887 + Psyr_0427 0.36 -2.8 465,887 + Psyr_0427 0.36 +1.5 465,887 + Psyr_0427 0.36 -0.2 465,887 + Psyr_0427 0.36 +1.1 465,887 + Psyr_0427 0.36 -0.4 465,887 + Psyr_0427 0.36 -0.0 465,888 - Psyr_0427 0.36 +0.0 465,918 - Psyr_0427 0.40 -0.3 465,918 - Psyr_0427 0.40 -0.2 466,066 + Psyr_0427 0.60 +0.9
Or see this region's nucleotide sequence