Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0347 and Psyr_0348 are separated by 137 nucleotides Psyr_0348 and Psyr_0349 are separated by 56 nucleotides Psyr_0349 and Psyr_0350 overlap by 11 nucleotides
Psyr_0347: Psyr_0347 - hypothetical protein, at 372,139 to 372,636
_0347
Psyr_0348: Psyr_0348 - conserved hypothetical protein, at 372,774 to 373,400
_0348
Psyr_0349: Psyr_0349 - Binding-protein-dependent transport systems inner membrane component, at 373,457 to 374,101
_0349
Psyr_0350: Psyr_0350 - ABC transporter, at 374,091 to 375,221
_0350
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.457 kb on - strand, within Psyr_0347 at 372.519 kb on + strand, within Psyr_0347 at 372.623 kb on + strand at 372.623 kb on + strand at 372.623 kb on + strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.681 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.709 kb on - strand at 372.709 kb on - strand at 372.749 kb on + strand at 372.749 kb on + strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.838 kb on + strand, within Psyr_0348 at 372.839 kb on - strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.905 kb on - strand, within Psyr_0348 at 373.287 kb on - strand, within Psyr_0348 at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.345 kb on + strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.346 kb on - strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.432 kb on + strand at 373.434 kb on + strand at 373.435 kb on - strand at 373.852 kb on - strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.971 kb on + strand, within Psyr_0349 at 373.972 kb on - strand, within Psyr_0349 at 373.972 kb on - strand, within Psyr_0349 at 374.101 kb on + strand at 374.102 kb on - strand at 374.102 kb on - strand at 374.110 kb on - strand at 374.148 kb on + strand at 374.508 kb on - strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.094 kb on + strand, within Psyr_0350 at 375.095 kb on - strand, within Psyr_0350
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 372,457 - Psyr_0347 0.64 -0.6 372,519 + Psyr_0347 0.76 -1.0 372,623 + +1.0 372,623 + -0.0 372,623 + +0.4 372,624 - +0.2 372,624 - +1.3 372,624 - +2.7 372,624 - -0.0 372,624 - +1.6 372,624 - -0.8 372,624 - +0.6 372,624 - -0.7 372,624 - +1.8 372,624 - -1.6 372,624 - +0.3 372,624 - +0.6 372,624 - -0.0 372,624 - -0.2 372,624 - +0.1 372,681 + +0.5 372,689 + +1.2 372,689 + +0.6 372,689 + -1.8 372,689 + +1.0 372,689 + -0.7 372,689 + -0.4 372,689 + +0.7 372,689 + +1.6 372,689 + +0.4 372,690 - -0.0 372,690 - -2.9 372,690 - -0.5 372,690 - -1.6 372,708 + +0.0 372,708 + +0.3 372,708 + +0.3 372,709 - +1.3 372,709 - -1.4 372,749 + -0.3 372,749 + -1.3 372,750 - -0.3 372,750 - -0.2 372,750 - +1.4 372,750 - +1.6 372,838 + Psyr_0348 0.10 -0.2 372,839 - Psyr_0348 0.10 +0.3 372,841 + Psyr_0348 0.11 +0.2 372,841 + Psyr_0348 0.11 -1.0 372,841 + Psyr_0348 0.11 +0.6 372,841 + Psyr_0348 0.11 -0.3 372,842 - Psyr_0348 0.11 +1.2 372,842 - Psyr_0348 0.11 -0.2 372,842 - Psyr_0348 0.11 +1.4 372,842 - Psyr_0348 0.11 -0.6 372,905 - Psyr_0348 0.21 +0.1 373,287 - Psyr_0348 0.82 -1.2 373,345 + +2.6 373,345 + -0.6 373,345 + +0.3 373,345 + -0.1 373,345 + -0.1 373,345 + +0.3 373,346 - +0.2 373,346 - +1.0 373,346 - -1.6 373,346 - -0.3 373,346 - +0.3 373,346 - -0.3 373,432 + -0.3 373,432 + +0.7 373,432 + -0.6 373,432 + +2.0 373,434 + +0.2 373,435 - -1.8 373,852 - Psyr_0349 0.61 -0.6 373,971 + Psyr_0349 0.80 +0.7 373,971 + Psyr_0349 0.80 +0.6 373,971 + Psyr_0349 0.80 +0.2 373,972 - Psyr_0349 0.80 +0.3 373,972 - Psyr_0349 0.80 +1.9 374,101 + +0.6 374,102 - +0.2 374,102 - +0.2 374,110 - -0.2 374,148 + -1.0 374,508 - Psyr_0350 0.37 -2.5 375,094 + Psyr_0350 0.89 +0.7 375,094 + Psyr_0350 0.89 -0.2 375,095 - Psyr_0350 0.89 +0.3
Or see this region's nucleotide sequence