Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0197 and Psyr_0198 are separated by 69 nucleotides Psyr_0198 and Psyr_0199 are separated by 296 nucleotides Psyr_0199 and Psyr_0200 are separated by 62 nucleotides
Psyr_0197: Psyr_0197 - Mg chelatase-related protein, at 210,345 to 211,838
_0197
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Psyr_0199: Psyr_0199 - Glutathione-dependent formaldehyde-activating, GFA, at 213,512 to 213,913
_0199
Psyr_0200: Psyr_0200 - conserved hypothetical protein, at 213,976 to 215,373
_0200
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.917 kb on + strand, within Psyr_0197 at 210.980 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.286 kb on - strand, within Psyr_0197 at 211.311 kb on - strand, within Psyr_0197 at 211.395 kb on + strand, within Psyr_0197 at 211.653 kb on + strand, within Psyr_0197 at 211.899 kb on + strand at 211.899 kb on + strand at 211.900 kb on - strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.988 kb on + strand at 211.988 kb on + strand at 211.989 kb on - strand at 212.044 kb on + strand, within Psyr_0198 at 212.044 kb on + strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.167 kb on + strand, within Psyr_0198 at 212.168 kb on - strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.633 kb on - strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.059 kb on + strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.185 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.235 kb on + strand at 213.235 kb on + strand at 213.236 kb on - strand at 213.236 kb on - strand at 213.281 kb on - strand at 213.343 kb on + strand at 213.343 kb on + strand at 213.344 kb on - strand at 213.344 kb on - strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.422 kb on + strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.472 kb on - strand at 213.696 kb on - strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.847 kb on - strand, within Psyr_0199 at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.978 kb on - strand at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.152 kb on - strand, within Psyr_0200 at 214.167 kb on - strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 210,917 + Psyr_0197 0.38 -1.4 210,980 + Psyr_0197 0.43 -0.5 211,237 + Psyr_0197 0.60 +0.1 211,237 + Psyr_0197 0.60 -0.5 211,285 + Psyr_0197 0.63 -0.4 211,285 + Psyr_0197 0.63 -1.6 211,285 + Psyr_0197 0.63 -1.6 211,285 + Psyr_0197 0.63 -0.7 211,285 + Psyr_0197 0.63 +0.5 211,285 + Psyr_0197 0.63 +0.3 211,285 + Psyr_0197 0.63 -0.6 211,286 - Psyr_0197 0.63 +0.6 211,311 - Psyr_0197 0.65 -0.1 211,395 + Psyr_0197 0.70 +0.6 211,653 + Psyr_0197 0.88 +0.2 211,899 + +0.3 211,899 + +1.0 211,900 - +0.2 211,909 + -1.3 211,909 + +0.6 211,909 + +0.1 211,909 + +0.2 211,909 + -1.0 211,909 + +1.3 211,909 + -0.5 211,909 + -0.1 211,909 + +0.3 211,909 + -0.6 211,909 + +0.7 211,909 + -0.2 211,909 + +0.3 211,910 - +1.0 211,910 - -0.5 211,910 - +0.0 211,910 - -0.9 211,910 - +0.2 211,910 - +1.0 211,910 - +0.8 211,910 - +0.4 211,910 - -0.8 211,910 - +0.4 211,910 - -1.0 211,910 - -0.1 211,910 - +0.6 211,910 - -1.8 211,910 - +0.5 211,910 - +0.8 211,910 - -0.5 211,910 - -0.4 211,910 - -0.1 211,910 - +1.4 211,910 - -0.4 211,910 - +0.1 211,920 - +0.3 211,920 - -1.0 211,920 - -1.0 211,921 + -3.0 211,921 + +0.2 211,921 + -1.2 211,921 + -1.0 211,921 + -0.5 211,921 + -0.9 211,921 + +0.5 211,921 + +1.3 211,921 + +0.4 211,921 + +0.3 211,921 + -0.2 211,921 + -0.5 211,921 + -0.8 211,922 - +1.1 211,922 - +0.1 211,922 - +0.1 211,922 - -0.6 211,922 - +1.0 211,922 - +0.4 211,922 - +0.3 211,988 + -0.9 211,988 + -0.2 211,989 - -0.2 212,044 + Psyr_0198 0.10 +0.0 212,044 + Psyr_0198 0.10 +0.7 212,045 - Psyr_0198 0.10 -1.3 212,045 - Psyr_0198 0.10 -0.1 212,167 + Psyr_0198 0.20 +1.6 212,168 - Psyr_0198 0.20 +0.7 212,170 + Psyr_0198 0.20 -0.1 212,170 + Psyr_0198 0.20 -1.2 212,170 + Psyr_0198 0.20 -0.7 212,170 + Psyr_0198 0.20 -1.4 212,170 + Psyr_0198 0.20 +0.7 212,171 - Psyr_0198 0.20 +1.2 212,171 - Psyr_0198 0.20 +0.4 212,171 - Psyr_0198 0.20 -0.4 212,171 - Psyr_0198 0.20 +0.3 212,633 - Psyr_0198 0.55 +0.2 212,638 + Psyr_0198 0.56 +0.4 212,638 + Psyr_0198 0.56 +0.0 212,638 + Psyr_0198 0.56 +0.2 212,639 - Psyr_0198 0.56 +0.3 212,639 - Psyr_0198 0.56 +0.9 212,830 + Psyr_0198 0.70 -3.5 212,830 + Psyr_0198 0.70 +0.2 212,830 + Psyr_0198 0.70 -1.1 212,863 + Psyr_0198 0.73 +0.4 212,863 + Psyr_0198 0.73 -0.5 212,863 + Psyr_0198 0.73 +0.3 212,863 + Psyr_0198 0.73 +0.9 212,863 + Psyr_0198 0.73 -0.6 212,863 + Psyr_0198 0.73 +0.2 212,863 + Psyr_0198 0.73 -1.2 212,863 + Psyr_0198 0.73 +1.4 212,863 + Psyr_0198 0.73 +0.2 212,863 + Psyr_0198 0.73 +0.7 212,863 + Psyr_0198 0.73 -2.6 212,863 + Psyr_0198 0.73 +1.0 212,864 - Psyr_0198 0.73 +0.8 212,864 - Psyr_0198 0.73 -1.1 212,864 - Psyr_0198 0.73 -0.5 212,864 - Psyr_0198 0.73 +0.4 212,864 - Psyr_0198 0.73 +0.1 212,864 - Psyr_0198 0.73 +0.3 212,864 - Psyr_0198 0.73 -2.8 212,864 - Psyr_0198 0.73 +0.2 212,864 - Psyr_0198 0.73 -0.3 212,864 - Psyr_0198 0.73 +0.7 212,864 - Psyr_0198 0.73 +0.5 212,864 - Psyr_0198 0.73 +0.4 212,864 - Psyr_0198 0.73 -0.6 213,010 + Psyr_0198 0.84 -1.0 213,010 + Psyr_0198 0.84 +0.9 213,059 + Psyr_0198 0.88 -0.8 213,060 - Psyr_0198 0.88 -1.9 213,060 - Psyr_0198 0.88 +0.1 213,172 + -0.2 213,172 + -0.4 213,172 + +0.6 213,172 + -0.2 213,172 + +0.6 213,172 + -0.2 213,173 - +1.3 213,173 - +0.4 213,173 - +1.7 213,173 - -1.0 213,173 - -0.6 213,185 + +1.1 213,232 + +0.3 213,232 + -0.0 213,232 + -0.6 213,232 + -0.7 213,233 - -0.7 213,233 - +0.9 213,233 - +0.6 213,233 - -0.8 213,235 + +0.0 213,235 + -0.4 213,236 - -0.3 213,236 - +0.1 213,281 - +0.9 213,343 + -0.7 213,343 + -0.6 213,344 - +2.2 213,344 - +0.5 213,352 + -0.1 213,352 + -0.2 213,352 + +0.1 213,353 - +0.9 213,353 - +1.6 213,353 - +0.2 213,422 + +0.1 213,423 - -0.3 213,423 - +1.0 213,423 - +0.4 213,423 - -2.5 213,423 - -1.3 213,472 - +0.1 213,696 - Psyr_0199 0.46 -1.4 213,722 + Psyr_0199 0.52 -0.4 213,722 + Psyr_0199 0.52 +1.0 213,847 - Psyr_0199 0.83 -0.6 213,959 + +0.8 213,959 + +0.5 213,959 + -1.5 213,959 + +0.1 213,959 + +0.2 213,959 + -0.0 213,959 + +1.7 213,960 - +0.3 213,960 - +1.7 213,960 - +0.0 213,960 - +1.0 213,960 - -1.6 213,960 - +0.2 213,960 - -0.0 213,964 + -0.5 213,964 + +1.1 213,964 + -1.5 213,964 + +0.1 213,964 + -1.4 213,964 + +0.1 213,965 - +0.3 213,965 - -0.9 213,965 - +1.0 213,965 - +0.2 213,978 - -1.6 214,151 + Psyr_0200 0.13 -0.9 214,151 + Psyr_0200 0.13 -0.4 214,151 + Psyr_0200 0.13 +0.1 214,152 - Psyr_0200 0.13 -0.2 214,167 - Psyr_0200 0.14 -0.5 214,187 + Psyr_0200 0.15 +0.2 214,187 + Psyr_0200 0.15 -0.8 214,187 + Psyr_0200 0.15 +0.1 214,187 + Psyr_0200 0.15 -0.6 214,188 - Psyr_0200 0.15 -0.1 214,188 - Psyr_0200 0.15 +0.7 214,188 - Psyr_0200 0.15 +1.0
Or see this region's nucleotide sequence