Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0196 and Psyr_0197 are separated by 397 nucleotides Psyr_0197 and Psyr_0198 are separated by 69 nucleotides
Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947
_0196
Psyr_0197: Psyr_0197 - Mg chelatase-related protein, at 210,345 to 211,838
_0197
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Position (kb) 210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 209.422 kb on - strand, within Psyr_0196 at 209.655 kb on + strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.685 kb on + strand at 209.685 kb on + strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.707 kb on - strand at 209.723 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.989 kb on + strand at 209.990 kb on - strand at 209.990 kb on - strand at 210.012 kb on - strand at 210.047 kb on + strand at 210.048 kb on - strand at 210.093 kb on - strand at 210.152 kb on + strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.155 kb on - strand at 210.155 kb on - strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.235 kb on + strand at 210.235 kb on + strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.271 kb on - strand at 210.302 kb on + strand at 210.302 kb on + strand at 210.303 kb on - strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.330 kb on - strand at 210.365 kb on + strand at 210.917 kb on + strand, within Psyr_0197 at 210.980 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.237 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.285 kb on + strand, within Psyr_0197 at 211.286 kb on - strand, within Psyr_0197 at 211.311 kb on - strand, within Psyr_0197 at 211.395 kb on + strand, within Psyr_0197 at 211.653 kb on + strand, within Psyr_0197 at 211.899 kb on + strand at 211.899 kb on + strand at 211.900 kb on - strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.909 kb on + strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.910 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.920 kb on - strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.921 kb on + strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.922 kb on - strand at 211.988 kb on + strand at 211.988 kb on + strand at 211.989 kb on - strand at 212.044 kb on + strand, within Psyr_0198 at 212.044 kb on + strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.045 kb on - strand, within Psyr_0198 at 212.167 kb on + strand, within Psyr_0198 at 212.168 kb on - strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.170 kb on + strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.171 kb on - strand, within Psyr_0198 at 212.633 kb on - strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 209,422 - Psyr_0196 0.84 -0.5 209,655 + -0.5 209,656 - -0.5 209,656 - -0.2 209,656 - -1.0 209,656 - -1.7 209,656 - +1.7 209,656 - +0.4 209,656 - -0.9 209,656 - +0.8 209,656 - +0.7 209,656 - +1.5 209,685 + -0.7 209,685 + +0.5 209,686 - -0.9 209,686 - +0.0 209,686 - -0.7 209,686 - -2.0 209,691 + +0.8 209,691 + +1.0 209,691 + +0.5 209,691 + -0.8 209,691 + +0.4 209,691 + -0.5 209,691 + -1.0 209,691 + -0.9 209,691 + +0.2 209,691 + -0.1 209,691 + -1.1 209,691 + -0.8 209,691 + +1.3 209,691 + +1.5 209,691 + -3.5 209,691 + -0.5 209,691 + -0.2 209,691 + +0.4 209,691 + +0.1 209,691 + -0.6 209,691 + +2.6 209,691 + +1.0 209,691 + -1.8 209,691 + +0.3 209,691 + +0.4 209,691 + +0.3 209,691 + -0.6 209,691 + -0.5 209,691 + +0.9 209,691 + -0.3 209,691 + -0.4 209,691 + +1.9 209,691 + +0.2 209,691 + +0.5 209,691 + -1.4 209,691 + -1.0 209,691 + +1.4 209,691 + -0.5 209,691 + +0.7 209,691 + +0.1 209,691 + +0.4 209,691 + -0.3 209,691 + +0.5 209,691 + -0.3 209,691 + -0.9 209,691 + +0.7 209,698 - +0.8 209,698 - -0.5 209,698 - +0.1 209,706 + -1.1 209,706 + +2.7 209,706 + +0.2 209,706 + -0.9 209,706 + -0.9 209,706 + +0.1 209,707 - -0.0 209,723 - +0.0 209,725 - -0.2 209,725 - -0.7 209,725 - -1.4 209,725 - -2.0 209,725 - -0.8 209,725 - -3.6 209,989 + +0.2 209,990 - -1.8 209,990 - -0.3 210,012 - -0.3 210,047 + +0.1 210,048 - -1.8 210,093 - +0.5 210,152 + +0.7 210,152 + -1.2 210,153 - +0.3 210,153 - +0.2 210,153 - -0.5 210,154 + +0.1 210,154 + +0.2 210,154 + +3.3 210,155 - -1.7 210,155 - -1.7 210,207 + +0.6 210,207 + +0.9 210,207 + +0.3 210,207 + +1.5 210,207 + +1.3 210,207 + -0.9 210,208 - -0.6 210,208 - +0.0 210,208 - +0.0 210,235 + -2.6 210,235 + -0.1 210,236 - +0.0 210,236 - +0.1 210,236 - -0.0 210,271 - +0.5 210,302 + -0.8 210,302 + -0.2 210,303 - -0.9 210,329 + -0.2 210,329 + +0.2 210,329 + +0.0 210,330 - +1.5 210,365 + -0.3 210,917 + Psyr_0197 0.38 -1.4 210,980 + Psyr_0197 0.43 -0.5 211,237 + Psyr_0197 0.60 +0.1 211,237 + Psyr_0197 0.60 -0.5 211,285 + Psyr_0197 0.63 -0.4 211,285 + Psyr_0197 0.63 -1.6 211,285 + Psyr_0197 0.63 -1.6 211,285 + Psyr_0197 0.63 -0.7 211,285 + Psyr_0197 0.63 +0.5 211,285 + Psyr_0197 0.63 +0.3 211,285 + Psyr_0197 0.63 -0.6 211,286 - Psyr_0197 0.63 +0.6 211,311 - Psyr_0197 0.65 -0.1 211,395 + Psyr_0197 0.70 +0.6 211,653 + Psyr_0197 0.88 +0.2 211,899 + +0.3 211,899 + +1.0 211,900 - +0.2 211,909 + -1.3 211,909 + +0.6 211,909 + +0.1 211,909 + +0.2 211,909 + -1.0 211,909 + +1.3 211,909 + -0.5 211,909 + -0.1 211,909 + +0.3 211,909 + -0.6 211,909 + +0.7 211,909 + -0.2 211,909 + +0.3 211,910 - +1.0 211,910 - -0.5 211,910 - +0.0 211,910 - -0.9 211,910 - +0.2 211,910 - +1.0 211,910 - +0.8 211,910 - +0.4 211,910 - -0.8 211,910 - +0.4 211,910 - -1.0 211,910 - -0.1 211,910 - +0.6 211,910 - -1.8 211,910 - +0.5 211,910 - +0.8 211,910 - -0.5 211,910 - -0.4 211,910 - -0.1 211,910 - +1.4 211,910 - -0.4 211,910 - +0.1 211,920 - +0.3 211,920 - -1.0 211,920 - -1.0 211,921 + -3.0 211,921 + +0.2 211,921 + -1.2 211,921 + -1.0 211,921 + -0.5 211,921 + -0.9 211,921 + +0.5 211,921 + +1.3 211,921 + +0.4 211,921 + +0.3 211,921 + -0.2 211,921 + -0.5 211,921 + -0.8 211,922 - +1.1 211,922 - +0.1 211,922 - +0.1 211,922 - -0.6 211,922 - +1.0 211,922 - +0.4 211,922 - +0.3 211,988 + -0.9 211,988 + -0.2 211,989 - -0.2 212,044 + Psyr_0198 0.10 +0.0 212,044 + Psyr_0198 0.10 +0.7 212,045 - Psyr_0198 0.10 -1.3 212,045 - Psyr_0198 0.10 -0.1 212,167 + Psyr_0198 0.20 +1.6 212,168 - Psyr_0198 0.20 +0.7 212,170 + Psyr_0198 0.20 -0.1 212,170 + Psyr_0198 0.20 -1.2 212,170 + Psyr_0198 0.20 -0.7 212,170 + Psyr_0198 0.20 -1.4 212,170 + Psyr_0198 0.20 +0.7 212,171 - Psyr_0198 0.20 +1.2 212,171 - Psyr_0198 0.20 +0.4 212,171 - Psyr_0198 0.20 -0.4 212,171 - Psyr_0198 0.20 +0.3 212,633 - Psyr_0198 0.55 +0.2 212,638 + Psyr_0198 0.56 +0.4 212,638 + Psyr_0198 0.56 +0.0 212,638 + Psyr_0198 0.56 +0.2 212,639 - Psyr_0198 0.56 +0.3 212,639 - Psyr_0198 0.56 +0.9 212,830 + Psyr_0198 0.70 -3.5 212,830 + Psyr_0198 0.70 +0.2 212,830 + Psyr_0198 0.70 -1.1
Or see this region's nucleotide sequence