Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0187 and Psyr_0188 are separated by 98 nucleotides Psyr_0188 and Psyr_0189 are separated by 242 nucleotides Psyr_0189 and Psyr_0190 are separated by 33 nucleotides Psyr_0190 and Psyr_0191 are separated by 417 nucleotides
Psyr_0187: Psyr_0187 - conserved hypothetical protein, at 199,549 to 199,875
_0187
Psyr_0188: Psyr_0188 - Protein of unknown function UPF0047, at 199,974 to 200,399
_0188
Psyr_0189: Psyr_0189 - ammonium transporter, at 200,642 to 201,979
_0189
Psyr_0190: Psyr_0190 - nitrogen regulatory protein P-II, at 202,013 to 202,351
_0190
Psyr_0191: Psyr_0191 - Protein of unknown function DUF526, at 202,769 to 203,044
_0191
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 199.854 kb on + strand at 199.854 kb on + strand at 199.854 kb on + strand at 199.857 kb on + strand at 199.858 kb on - strand at 199.858 kb on - strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.911 kb on + strand at 199.912 kb on - strand at 199.975 kb on + strand at 199.976 kb on - strand at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.224 kb on - strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.331 kb on + strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.430 kb on - strand at 200.430 kb on - strand at 200.461 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.643 kb on + strand at 200.643 kb on + strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.934 kb on + strand, within Psyr_0189 at 201.094 kb on + strand, within Psyr_0189 at 201.259 kb on - strand, within Psyr_0189 at 201.314 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.327 kb on - strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.445 kb on - strand, within Psyr_0189 at 201.464 kb on - strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.635 kb on - strand, within Psyr_0189 at 201.930 kb on - strand at 201.979 kb on + strand at 201.979 kb on + strand at 201.980 kb on - strand at 201.980 kb on - strand at 202.014 kb on + strand at 202.015 kb on - strand at 202.019 kb on - strand at 202.411 kb on - strand at 202.432 kb on - strand at 202.432 kb on - strand at 202.551 kb on + strand at 202.551 kb on + strand at 202.551 kb on + strand at 202.552 kb on - strand at 202.560 kb on - strand at 202.587 kb on - strand at 202.598 kb on - strand at 202.637 kb on + strand at 202.638 kb on - strand at 202.638 kb on - strand at 202.638 kb on - strand at 202.648 kb on + strand at 202.648 kb on + strand at 202.691 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.736 kb on + strand at 202.736 kb on + strand at 202.736 kb on + strand at 202.737 kb on - strand at 202.765 kb on - strand at 202.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 199,854 + -0.8 199,854 + -1.5 199,854 + -1.5 199,857 + -1.6 199,858 - -2.0 199,858 - +0.5 199,880 + -1.6 199,880 + -1.4 199,880 + -2.3 199,880 + -1.2 199,880 + +0.8 199,881 - -0.6 199,881 - -0.6 199,881 - +1.2 199,905 + +1.5 199,905 + -2.2 199,905 + -2.4 199,906 - -1.8 199,906 - -1.2 199,906 - -0.5 199,909 + -1.5 199,909 + -1.0 199,909 + +1.6 199,909 + -0.4 199,910 - -2.2 199,910 - -1.5 199,910 - -0.7 199,910 - +0.9 199,910 - +0.3 199,910 - +0.1 199,911 + -1.0 199,912 - +0.5 199,975 + +0.2 199,976 - +0.1 200,044 + Psyr_0188 0.16 -2.0 200,044 + Psyr_0188 0.16 -0.6 200,044 + Psyr_0188 0.16 -0.6 200,044 + Psyr_0188 0.16 -0.7 200,048 + Psyr_0188 0.17 -2.7 200,048 + Psyr_0188 0.17 +0.7 200,048 + Psyr_0188 0.17 +0.0 200,048 + Psyr_0188 0.17 -0.8 200,048 + Psyr_0188 0.17 -1.0 200,049 - Psyr_0188 0.18 -2.4 200,049 - Psyr_0188 0.18 +0.5 200,049 - Psyr_0188 0.18 +0.6 200,049 - Psyr_0188 0.18 +0.4 200,049 - Psyr_0188 0.18 +1.0 200,049 - Psyr_0188 0.18 -0.2 200,049 - Psyr_0188 0.18 -0.9 200,224 - Psyr_0188 0.59 +1.1 200,267 + Psyr_0188 0.69 +0.6 200,267 + Psyr_0188 0.69 -1.8 200,267 + Psyr_0188 0.69 +0.0 200,267 + Psyr_0188 0.69 +0.4 200,267 + Psyr_0188 0.69 -0.3 200,267 + Psyr_0188 0.69 +0.3 200,267 + Psyr_0188 0.69 -0.9 200,267 + Psyr_0188 0.69 +0.3 200,267 + Psyr_0188 0.69 +1.1 200,268 - Psyr_0188 0.69 -0.6 200,268 - Psyr_0188 0.69 -0.1 200,268 - Psyr_0188 0.69 -0.6 200,268 - Psyr_0188 0.69 -0.9 200,268 - Psyr_0188 0.69 +0.1 200,280 + Psyr_0188 0.72 -1.2 200,280 + Psyr_0188 0.72 +0.2 200,280 + Psyr_0188 0.72 -1.3 200,280 + Psyr_0188 0.72 -1.6 200,280 + Psyr_0188 0.72 -0.9 200,280 + Psyr_0188 0.72 +0.1 200,280 + Psyr_0188 0.72 +0.7 200,280 + Psyr_0188 0.72 -2.3 200,280 + Psyr_0188 0.72 -1.0 200,280 + Psyr_0188 0.72 +0.0 200,280 + Psyr_0188 0.72 +0.0 200,280 + Psyr_0188 0.72 -0.6 200,280 + Psyr_0188 0.72 +0.4 200,280 + Psyr_0188 0.72 -1.9 200,281 - Psyr_0188 0.72 +0.7 200,281 - Psyr_0188 0.72 +0.4 200,281 - Psyr_0188 0.72 +0.0 200,281 - Psyr_0188 0.72 +2.5 200,281 - Psyr_0188 0.72 -0.2 200,281 - Psyr_0188 0.72 +1.0 200,281 - Psyr_0188 0.72 +0.5 200,281 - Psyr_0188 0.72 +3.1 200,281 - Psyr_0188 0.72 +0.2 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 +0.8 200,281 - Psyr_0188 0.72 -1.2 200,281 - +1.0 200,281 - Psyr_0188 0.72 +0.7 200,281 - Psyr_0188 0.72 +1.0 200,281 - Psyr_0188 0.72 +0.4 200,281 - Psyr_0188 0.72 +0.3 200,281 - Psyr_0188 0.72 -0.8 200,281 - Psyr_0188 0.72 -0.8 200,331 + Psyr_0188 0.84 +0.1 200,332 - Psyr_0188 0.84 -3.0 200,332 - Psyr_0188 0.84 -1.0 200,399 + -1.8 200,399 + +0.7 200,399 + +0.6 200,399 + -0.1 200,400 - -0.7 200,400 - +0.6 200,400 - +0.1 200,430 - -0.8 200,430 - -0.5 200,461 + -0.3 200,574 + -1.0 200,574 + +0.5 200,574 + +1.3 200,575 - -0.9 200,575 - -0.3 200,575 - -0.5 200,577 - +0.3 200,577 - +0.7 200,577 - +0.5 200,643 + +0.9 200,643 + -2.3 200,644 - -0.9 200,644 - +0.7 200,644 - -0.8 200,769 + -2.0 200,769 + -1.0 200,769 + +1.8 200,769 + -0.8 200,769 + -0.3 200,770 - -0.6 200,770 - +0.2 200,934 + Psyr_0189 0.22 +1.6 201,094 + Psyr_0189 0.34 -1.2 201,259 - Psyr_0189 0.46 +1.5 201,314 + Psyr_0189 0.50 +1.5 201,326 + Psyr_0189 0.51 -0.2 201,326 + Psyr_0189 0.51 +0.4 201,326 + Psyr_0189 0.51 -1.0 201,326 + Psyr_0189 0.51 +0.6 201,327 - Psyr_0189 0.51 -0.2 201,352 + Psyr_0189 0.53 +0.5 201,352 + Psyr_0189 0.53 -3.2 201,352 + Psyr_0189 0.53 +0.8 201,352 + Psyr_0189 0.53 +0.5 201,352 + Psyr_0189 0.53 -1.3 201,352 + Psyr_0189 0.53 -1.7 201,352 + Psyr_0189 0.53 -0.6 201,352 + Psyr_0189 0.53 +0.4 201,352 + Psyr_0189 0.53 +0.2 201,352 + Psyr_0189 0.53 +0.4 201,352 + Psyr_0189 0.53 -1.4 201,352 + Psyr_0189 0.53 +0.4 201,353 - Psyr_0189 0.53 +0.2 201,353 - Psyr_0189 0.53 +0.2 201,353 - Psyr_0189 0.53 -0.3 201,353 - Psyr_0189 0.53 +0.1 201,353 - Psyr_0189 0.53 -0.9 201,353 - Psyr_0189 0.53 +0.9 201,353 - Psyr_0189 0.53 +0.6 201,353 - Psyr_0189 0.53 +0.6 201,353 - Psyr_0189 0.53 -0.6 201,356 + Psyr_0189 0.53 +0.7 201,356 + Psyr_0189 0.53 -0.3 201,356 + Psyr_0189 0.53 -0.0 201,356 + Psyr_0189 0.53 -0.3 201,356 + Psyr_0189 0.53 +0.5 201,356 + Psyr_0189 0.53 -0.1 201,356 + Psyr_0189 0.53 +1.7 201,356 + Psyr_0189 0.53 +0.9 201,356 + Psyr_0189 0.53 +1.2 201,356 + Psyr_0189 0.53 +0.4 201,356 + Psyr_0189 0.53 +0.5 201,357 - Psyr_0189 0.53 +1.3 201,357 - Psyr_0189 0.53 +0.3 201,357 - Psyr_0189 0.53 +0.9 201,357 - Psyr_0189 0.53 -1.7 201,357 - Psyr_0189 0.53 +0.1 201,357 - Psyr_0189 0.53 -1.2 201,357 - Psyr_0189 0.53 -0.0 201,357 - Psyr_0189 0.53 -0.4 201,357 - Psyr_0189 0.53 -2.4 201,357 - Psyr_0189 0.53 +1.3 201,357 - Psyr_0189 0.53 +0.4 201,357 - Psyr_0189 0.53 -0.7 201,357 - Psyr_0189 0.53 +0.0 201,357 - Psyr_0189 0.53 +0.7 201,445 - Psyr_0189 0.60 +1.3 201,464 - Psyr_0189 0.61 +1.0 201,521 + Psyr_0189 0.66 +1.3 201,521 + Psyr_0189 0.66 -0.6 201,521 + Psyr_0189 0.66 +1.2 201,635 - Psyr_0189 0.74 -2.0 201,930 - -0.2 201,979 + -0.3 201,979 + -0.6 201,980 - -1.7 201,980 - +0.5 202,014 + -0.4 202,015 - +1.6 202,019 - -0.8 202,411 - +0.0 202,432 - -0.1 202,432 - +0.2 202,551 + -0.1 202,551 + +1.0 202,551 + -0.2 202,552 - +1.4 202,560 - -0.4 202,587 - +0.3 202,598 - -1.3 202,637 + -0.5 202,638 - +0.6 202,638 - +2.2 202,638 - -1.2 202,648 + +0.9 202,648 + +1.0 202,691 + -0.5 202,722 + -0.3 202,722 + -0.3 202,722 + -1.8 202,722 + +1.3 202,722 + -0.1 202,723 - -1.4 202,723 - +0.0 202,723 - +0.3 202,723 - -0.9 202,723 - -2.6 202,736 + +0.6 202,736 + +0.0 202,736 + +0.0 202,737 - +0.2 202,765 - -2.4 202,765 - -2.3
Or see this region's nucleotide sequence