Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4967 and Psyr_4968 are separated by 152 nucleotides Psyr_4968 and Psyr_4969 are separated by 34 nucleotides Psyr_4969 and Psyr_4970 are separated by 50 nucleotides
Psyr_4967: Psyr_4967 - conserved hypothetical protein, at 5,891,620 to 5,892,045
_4967
Psyr_4968: Psyr_4968 - hypothetical protein, at 5,892,198 to 5,892,530
_4968
Psyr_4969: Psyr_4969 - PAAR, at 5,892,565 to 5,892,873
_4969
Psyr_4970: Psyr_4970 - Phospholipase D/Transphosphatidylase, at 5,892,924 to 5,894,978
_4970
Position (kb) 5892
5893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5891.615 kb on - strand at 5891.950 kb on - strand, within Psyr_4967 at 5891.959 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.978 kb on - strand, within Psyr_4967 at 5891.983 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.987 kb on - strand, within Psyr_4967 at 5892.119 kb on + strand at 5892.120 kb on - strand at 5892.162 kb on - strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.201 kb on + strand at 5892.201 kb on + strand at 5892.202 kb on - strand at 5892.238 kb on + strand, within Psyr_4968 at 5892.239 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.331 kb on + strand, within Psyr_4968 at 5892.332 kb on - strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.341 kb on - strand, within Psyr_4968 at 5892.376 kb on - strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.494 kb on - strand, within Psyr_4968 at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.523 kb on - strand at 5892.523 kb on - strand at 5892.526 kb on + strand at 5892.526 kb on + strand at 5892.526 kb on + strand at 5892.527 kb on - strand at 5892.527 kb on - strand at 5892.563 kb on - strand at 5892.563 kb on - strand at 5892.563 kb on - strand at 5892.604 kb on + strand, within Psyr_4969 at 5892.604 kb on + strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.619 kb on - strand, within Psyr_4969 at 5892.619 kb on - strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.649 kb on - strand, within Psyr_4969 at 5892.649 kb on - strand, within Psyr_4969 at 5892.695 kb on + strand, within Psyr_4969 at 5892.696 kb on - strand, within Psyr_4969 at 5892.748 kb on - strand, within Psyr_4969 at 5892.871 kb on + strand at 5892.871 kb on + strand at 5892.871 kb on + strand at 5892.872 kb on - strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5893.031 kb on + strand at 5893.032 kb on - strand at 5893.032 kb on - strand at 5893.032 kb on - strand at 5893.076 kb on - strand at 5893.077 kb on + strand at 5893.077 kb on + strand at 5893.078 kb on - strand at 5893.078 kb on - strand at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.149 kb on - strand, within Psyr_4970 at 5893.175 kb on + strand, within Psyr_4970 at 5893.176 kb on - strand, within Psyr_4970 at 5893.176 kb on - strand, within Psyr_4970 at 5893.244 kb on + strand, within Psyr_4970 at 5893.244 kb on + strand, within Psyr_4970 at 5893.245 kb on - strand, within Psyr_4970 at 5893.340 kb on + strand, within Psyr_4970 at 5893.351 kb on + strand, within Psyr_4970 at 5893.366 kb on + strand, within Psyr_4970 at 5893.367 kb on - strand, within Psyr_4970 at 5893.446 kb on + strand, within Psyr_4970 at 5893.468 kb on - strand, within Psyr_4970 at 5893.561 kb on + strand, within Psyr_4970 at 5893.562 kb on - strand, within Psyr_4970 at 5893.624 kb on + strand, within Psyr_4970 at 5893.625 kb on - strand, within Psyr_4970 at 5893.625 kb on - strand, within Psyr_4970 at 5893.670 kb on + strand, within Psyr_4970 at 5893.726 kb on - strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.766 kb on + strand, within Psyr_4970 at 5893.767 kb on - strand, within Psyr_4970 at 5893.767 kb on - strand, within Psyr_4970 at 5893.767 kb on - strand, within Psyr_4970 at 5893.767 kb on - strand, within Psyr_4970 at 5893.767 kb on - strand, within Psyr_4970 at 5893.806 kb on + strand, within Psyr_4970 at 5893.806 kb on + strand, within Psyr_4970 at 5893.807 kb on - strand, within Psyr_4970 at 5893.807 kb on - strand, within Psyr_4970 at 5893.807 kb on - strand, within Psyr_4970 at 5893.859 kb on + strand, within Psyr_4970
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,891,615 - +0.2 5,891,950 - Psyr_4967 0.77 -0.5 5,891,959 + Psyr_4967 0.80 +0.1 5,891,977 + Psyr_4967 0.84 -1.6 5,891,977 + Psyr_4967 0.84 -0.4 5,891,977 + Psyr_4967 0.84 -1.6 5,891,978 - Psyr_4967 0.84 +0.0 5,891,983 + Psyr_4967 0.85 -1.9 5,891,986 + Psyr_4967 0.86 -2.3 5,891,986 + Psyr_4967 0.86 -0.3 5,891,987 - Psyr_4967 0.86 -1.3 5,892,119 + -1.6 5,892,120 - +1.2 5,892,162 - -1.7 5,892,165 + -1.2 5,892,165 + +0.4 5,892,165 + -0.5 5,892,165 + -1.7 5,892,166 - -1.2 5,892,166 - +0.9 5,892,166 - +1.7 5,892,201 + +1.0 5,892,201 + -1.2 5,892,202 - +1.2 5,892,238 + Psyr_4968 0.12 -0.1 5,892,239 - Psyr_4968 0.12 +0.9 5,892,303 - Psyr_4968 0.32 -0.0 5,892,303 - Psyr_4968 0.32 -2.8 5,892,331 + Psyr_4968 0.40 -3.4 5,892,332 - Psyr_4968 0.40 +1.1 5,892,336 + Psyr_4968 0.41 +1.1 5,892,336 + Psyr_4968 0.41 -0.4 5,892,336 + Psyr_4968 0.41 +1.3 5,892,337 - Psyr_4968 0.42 -0.1 5,892,337 - Psyr_4968 0.42 -1.6 5,892,337 - Psyr_4968 0.42 +0.6 5,892,337 - Psyr_4968 0.42 -0.2 5,892,341 - Psyr_4968 0.43 -2.1 5,892,376 - Psyr_4968 0.53 -0.5 5,892,420 + Psyr_4968 0.67 +1.0 5,892,420 + Psyr_4968 0.67 -0.5 5,892,420 + Psyr_4968 0.67 +0.9 5,892,421 - Psyr_4968 0.67 -2.5 5,892,421 - Psyr_4968 0.67 +0.3 5,892,421 - Psyr_4968 0.67 -2.2 5,892,421 - Psyr_4968 0.67 +0.1 5,892,421 - Psyr_4968 0.67 -1.0 5,892,494 - Psyr_4968 0.89 +1.6 5,892,522 + -1.8 5,892,522 + -0.3 5,892,522 + +0.7 5,892,522 + -0.1 5,892,522 + -1.8 5,892,522 + +0.9 5,892,522 + +0.4 5,892,523 - -0.7 5,892,523 - +0.9 5,892,526 + -1.6 5,892,526 + +1.9 5,892,526 + +0.8 5,892,527 - +0.5 5,892,527 - +0.6 5,892,563 - +0.2 5,892,563 - +1.2 5,892,563 - -0.1 5,892,604 + Psyr_4969 0.13 +0.8 5,892,604 + Psyr_4969 0.13 +0.5 5,892,605 - Psyr_4969 0.13 +1.5 5,892,605 - Psyr_4969 0.13 +1.4 5,892,605 - Psyr_4969 0.13 +0.2 5,892,619 - Psyr_4969 0.17 -0.3 5,892,619 - Psyr_4969 0.17 +0.3 5,892,648 + Psyr_4969 0.27 -0.1 5,892,648 + Psyr_4969 0.27 +2.5 5,892,648 + Psyr_4969 0.27 -1.1 5,892,649 - Psyr_4969 0.27 -2.5 5,892,649 - Psyr_4969 0.27 -0.7 5,892,695 + Psyr_4969 0.42 +1.4 5,892,696 - Psyr_4969 0.42 +0.1 5,892,748 - Psyr_4969 0.59 +1.1 5,892,871 + -1.8 5,892,871 + -3.6 5,892,871 + +1.3 5,892,872 - +0.1 5,892,888 + -0.3 5,892,888 + +0.7 5,892,888 + -1.1 5,892,888 + -0.7 5,892,888 + +0.2 5,892,888 + +1.2 5,892,888 + -0.8 5,892,888 + +1.2 5,892,888 + -1.0 5,892,889 - +0.5 5,892,889 - +1.5 5,892,889 - +1.2 5,892,889 - +0.6 5,892,889 - -0.2 5,892,889 - +0.9 5,892,889 - -1.3 5,893,031 + -0.8 5,893,032 - -0.9 5,893,032 - -0.3 5,893,032 - +0.4 5,893,076 - +0.0 5,893,077 + +0.2 5,893,077 + +0.5 5,893,078 - +0.0 5,893,078 - -0.1 5,893,143 + Psyr_4970 0.11 +1.6 5,893,143 + Psyr_4970 0.11 +1.5 5,893,143 + Psyr_4970 0.11 +1.4 5,893,143 + Psyr_4970 0.11 +0.2 5,893,143 + Psyr_4970 0.11 +1.0 5,893,144 - Psyr_4970 0.11 -0.0 5,893,144 - Psyr_4970 0.11 +1.0 5,893,144 - Psyr_4970 0.11 +0.6 5,893,149 - Psyr_4970 0.11 +0.6 5,893,175 + Psyr_4970 0.12 +0.1 5,893,176 - Psyr_4970 0.12 -1.0 5,893,176 - Psyr_4970 0.12 -2.2 5,893,244 + Psyr_4970 0.16 -1.0 5,893,244 + Psyr_4970 0.16 -1.2 5,893,245 - Psyr_4970 0.16 -1.3 5,893,340 + Psyr_4970 0.20 -0.4 5,893,351 + Psyr_4970 0.21 -0.6 5,893,366 + Psyr_4970 0.22 +1.4 5,893,367 - Psyr_4970 0.22 -3.0 5,893,446 + Psyr_4970 0.25 -0.3 5,893,468 - Psyr_4970 0.26 -1.2 5,893,561 + Psyr_4970 0.31 +2.0 5,893,562 - Psyr_4970 0.31 -1.1 5,893,624 + Psyr_4970 0.34 -1.1 5,893,625 - Psyr_4970 0.34 +2.2 5,893,625 - Psyr_4970 0.34 -0.9 5,893,670 + Psyr_4970 0.36 +2.7 5,893,726 - Psyr_4970 0.39 +1.3 5,893,766 + Psyr_4970 0.41 -1.9 5,893,766 + Psyr_4970 0.41 +1.2 5,893,766 + Psyr_4970 0.41 +0.2 5,893,766 + Psyr_4970 0.41 +0.3 5,893,766 + Psyr_4970 0.41 +1.0 5,893,766 + Psyr_4970 0.41 +0.0 5,893,767 - Psyr_4970 0.41 +0.5 5,893,767 - Psyr_4970 0.41 +1.0 5,893,767 - Psyr_4970 0.41 +0.6 5,893,767 - Psyr_4970 0.41 +3.8 5,893,767 - Psyr_4970 0.41 +2.0 5,893,806 + Psyr_4970 0.43 -1.2 5,893,806 + Psyr_4970 0.43 -0.4 5,893,807 - Psyr_4970 0.43 -0.3 5,893,807 - Psyr_4970 0.43 +0.7 5,893,807 - Psyr_4970 0.43 -1.7 5,893,859 + Psyr_4970 0.45 +1.0
Or see this region's nucleotide sequence