Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4962 and Psyr_4963 are separated by 31 nucleotides Psyr_4963 and Psyr_4964 overlap by 4 nucleotides
Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137
_4962
Psyr_4963: Psyr_4963 - hypothetical protein, at 5,886,169 to 5,887,092
_4963
Psyr_4964: Psyr_4964 - OmpA/MotB, at 5,887,089 to 5,889,581
_4964
Position (kb) 5886
5887
5888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5885.204 kb on + strand, within Psyr_4962 at 5885.204 kb on + strand, within Psyr_4962 at 5885.205 kb on - strand, within Psyr_4962 at 5885.205 kb on - strand, within Psyr_4962 at 5885.318 kb on + strand, within Psyr_4962 at 5885.318 kb on + strand, within Psyr_4962 at 5885.318 kb on + strand, within Psyr_4962 at 5885.318 kb on + strand, within Psyr_4962 at 5885.319 kb on - strand, within Psyr_4962 at 5885.319 kb on - strand, within Psyr_4962 at 5885.319 kb on - strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.322 kb on + strand, within Psyr_4962 at 5885.323 kb on - strand, within Psyr_4962 at 5885.323 kb on - strand, within Psyr_4962 at 5885.323 kb on - strand, within Psyr_4962 at 5885.776 kb on - strand at 5885.820 kb on + strand at 5885.867 kb on + strand at 5885.921 kb on + strand at 5886.057 kb on + strand at 5886.058 kb on - strand at 5886.058 kb on - strand at 5886.058 kb on - strand at 5886.058 kb on - strand at 5886.058 kb on - strand at 5886.750 kb on + strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5887.043 kb on - strand at 5887.043 kb on - strand at 5887.104 kb on + strand at 5887.105 kb on - strand at 5887.105 kb on - strand at 5887.105 kb on - strand at 5887.128 kb on + strand at 5887.135 kb on + strand at 5887.136 kb on - strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.452 kb on + strand, within Psyr_4964 at 5887.452 kb on + strand, within Psyr_4964 at 5887.467 kb on + strand, within Psyr_4964 at 5887.467 kb on + strand, within Psyr_4964 at 5887.467 kb on + strand, within Psyr_4964 at 5887.468 kb on - strand, within Psyr_4964 at 5887.638 kb on + strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5887.900 kb on - strand, within Psyr_4964 at 5888.019 kb on + strand, within Psyr_4964 at 5888.019 kb on + strand, within Psyr_4964 at 5888.020 kb on - strand, within Psyr_4964 at 5888.020 kb on - strand, within Psyr_4964 at 5888.092 kb on - strand, within Psyr_4964
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,885,204 + Psyr_4962 0.76 +0.1 5,885,204 + Psyr_4962 0.76 -1.6 5,885,205 - Psyr_4962 0.76 +1.4 5,885,205 - Psyr_4962 0.76 -0.1 5,885,318 + Psyr_4962 0.79 +0.6 5,885,318 + Psyr_4962 0.79 +0.2 5,885,318 + Psyr_4962 0.79 +1.6 5,885,318 + Psyr_4962 0.79 +0.4 5,885,319 - Psyr_4962 0.79 +0.9 5,885,319 - Psyr_4962 0.79 +1.9 5,885,319 - Psyr_4962 0.79 +0.9 5,885,322 + Psyr_4962 0.79 -1.2 5,885,322 + Psyr_4962 0.79 -0.9 5,885,322 + Psyr_4962 0.79 -0.1 5,885,322 + Psyr_4962 0.79 -1.0 5,885,322 + Psyr_4962 0.79 -0.3 5,885,322 + Psyr_4962 0.79 +2.9 5,885,323 - Psyr_4962 0.79 -0.3 5,885,323 - Psyr_4962 0.79 +0.0 5,885,323 - Psyr_4962 0.79 -0.6 5,885,776 - -0.9 5,885,820 + -2.1 5,885,867 + -0.1 5,885,921 + -0.6 5,886,057 + -0.3 5,886,058 - -1.5 5,886,058 - -0.3 5,886,058 - +0.0 5,886,058 - +0.8 5,886,058 - -0.3 5,886,750 + Psyr_4963 0.63 -1.6 5,886,751 - Psyr_4963 0.63 -0.5 5,886,751 - Psyr_4963 0.63 -0.7 5,886,964 + Psyr_4963 0.86 +0.3 5,886,964 + Psyr_4963 0.86 +0.2 5,886,964 + Psyr_4963 0.86 +0.8 5,886,964 + Psyr_4963 0.86 -2.2 5,886,964 + Psyr_4963 0.86 +0.6 5,886,964 + Psyr_4963 0.86 -1.5 5,886,964 + Psyr_4963 0.86 -1.8 5,886,965 - Psyr_4963 0.86 -1.2 5,886,965 - Psyr_4963 0.86 +0.6 5,886,965 - Psyr_4963 0.86 -0.5 5,886,965 - Psyr_4963 0.86 -0.9 5,886,972 - Psyr_4963 0.87 -0.1 5,886,972 - Psyr_4963 0.87 -0.1 5,886,972 - Psyr_4963 0.87 -0.3 5,886,972 - Psyr_4963 0.87 -0.3 5,887,043 - -0.1 5,887,043 - +0.1 5,887,104 + +1.7 5,887,105 - +2.0 5,887,105 - -1.3 5,887,105 - +0.3 5,887,128 + -0.1 5,887,135 + -1.5 5,887,136 - -1.5 5,887,254 + -2.9 5,887,254 + +0.5 5,887,254 + -0.4 5,887,254 + +0.5 5,887,254 + -0.7 5,887,254 + +1.3 5,887,254 + +0.1 5,887,254 + -0.2 5,887,254 + -0.4 5,887,254 + -3.2 5,887,254 + -1.2 5,887,254 + -0.3 5,887,254 + +1.8 5,887,255 - +0.7 5,887,255 - -0.4 5,887,255 - +1.6 5,887,255 - -1.1 5,887,255 - -0.3 5,887,255 - -0.2 5,887,255 - +0.4 5,887,255 - -0.6 5,887,255 - -1.4 5,887,255 - +0.4 5,887,255 - -1.0 5,887,255 - +1.1 5,887,255 - -0.1 5,887,255 - -0.5 5,887,255 - -0.6 5,887,279 + -0.2 5,887,279 + -3.5 5,887,279 + -0.6 5,887,280 - +1.4 5,887,280 - -1.1 5,887,280 - -0.2 5,887,452 + Psyr_4964 0.15 -0.2 5,887,452 + Psyr_4964 0.15 +0.3 5,887,467 + Psyr_4964 0.15 +1.4 5,887,467 + Psyr_4964 0.15 -0.4 5,887,467 + Psyr_4964 0.15 -0.5 5,887,468 - Psyr_4964 0.15 -0.4 5,887,638 + Psyr_4964 0.22 +0.8 5,887,851 + Psyr_4964 0.31 +0.2 5,887,851 + Psyr_4964 0.31 +0.1 5,887,851 + Psyr_4964 0.31 -0.4 5,887,852 - Psyr_4964 0.31 +1.6 5,887,852 - Psyr_4964 0.31 -1.5 5,887,900 - Psyr_4964 0.33 +0.3 5,888,019 + Psyr_4964 0.37 +1.9 5,888,019 + Psyr_4964 0.37 +0.9 5,888,020 - Psyr_4964 0.37 -0.2 5,888,020 - Psyr_4964 0.37 +0.8 5,888,092 - Psyr_4964 0.40 +2.0
Or see this region's nucleotide sequence